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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0096800 |
| Transcript ID | LotjaGi3g1v0096800.2 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WD repeat-containing protein; TAIR: AT5G54520.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q64LD2|WDR25_HUMAN WD repeat-containing protein 25; TrEMBL-Plants: tr|K7N3E5|K7N3E5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0096800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:12036649..12042474) extracted from Lotus japonicus Gifu genome v1.2.
CCATTAACTTAATACTGCGCTGAATCGATGATCGAGCCAAAGATGGATGGACCCTTGTTATAAACCAAAAGGAAAAACAA TATAACCCCCGAGAAGAAGAGAAGAAGGAGGTGAGAGGCAGCAGCCAAGAGGAGCAAAGATGGATCTCCTGTGCGACGCG TATTCGAATGCTTCAGACGAAGAAAGAGAGGAACAACCCAAACGACACAAGCCATCATCAAACTCTTCTTCAAACCCACC AAAACCCCATCTCTTCATTCCTAATCCTCACTACCCTCAAACACCACAACCTCCAATCCCTGGAACCTACGTCTCCAAAC GACAACGCGCGTCGATGGGAAACCTCGCCGCTTCTCTCCCTAACCCTGATCCCGCTCCTTCTTCATTCATACGAACAGGT ACATCATCAATTTTGCCAACTACTGAAACTGTTTCAATTTTGATGAAGAATTTAGTTTTCGTGTTTAACTTGTTACTCTA TTGTCTAATCTTGTGTTGATTTGATGAGGGTTAAAATTATTACCTGAGATGTTAAAATGATGTGATGGTGCTACCTTTAT TTGTTGTATGTATAGATGTTATATATTATATTTCTAACATGCCCCCTCACGCGAGAGCCCATTTGGGCTTGAAGCGTGGA TAATGCACAGACCCACCTACCATGTGCAGATGTGCTACATTCATTAAACTTTTTAATAATGGGGGCAACATGGGCATAGA GGCTCTGATACCAGGTCAATAGAAAAGTTGCAGCTTAATTTTGAATCATGCAACGTTATCATTTCAATATCATATGATGA GTGATGAGCTTGCATAATTTACAATGTCTTTGTGTCATCTTACACAGACTTTTCTCGTCGTAGGTTTTTTGGACATAGGT GTGTTGGATGTTTTAATGCTTTTATTTACTCTCCAGCTTATGTGTTCTACTTTTAGTCATAGGTAGTGACCACTACTCTT ACCTTATTCTTGTTCATAAATAGGGAGTATCTTGGATGTTGATACACCCCATAGCATTTTATCATTGCTGAAAAGCAAAT CAAAGGGTCATCAAAACCTAAACCCAAGATCTGAAAAGCTATCTGCAACTCTATATGGCCATACAAAAGCTGTCAGTGCT ATACATTGGTCATCAACTCATGGTAATTTTCTTTAACTGTTTCTGGATGTATTGTGTTACATTTAATGTATAAAGCAGGT ATTTATTCAAAGCTAGAATATTTTCGAAATCAAAATATTTAAGTGCTTACACTCCCACAATGGAGAAGAGAGACAGAGCA AGAGATATATGCTTGTTGTATATGTTACTAGTATTGATCTGTTCATTAAAGTTAGCTTGCAGCTCACCTCCTTGCATCTG CTGCGATGGATCATTTGGTTTGCATATGGAATGTATGGAGTAGAGATCAGAAGAAAGCATGTGTGCTAAACTTCCATAAT GCTGCCGTGAAAGATGTCAAATGGTCTCAGCAAGGGCTCTTTCTACTTTCTTGTGGATATGATTGCACATCAAGGTTAGT TGATGTTGAAAAGGGGATAGAAACCCAAGTTTTCAGAGAAGATCAAATCATTGGAGTTATAAAGTTCCACCCCGATAATT CAAGTCTCTTCCTTTCTGGAGGATCAAAGGGCCACATCAAACTATGGGATATTAGAACTGGCAAAGTAGTGCATAACTAT GATCGGAATTTAGGACCGATTCTTGATGTTGAATTTACAACGAATGGGAAGCAATTCATTTCTTCTAGTGATGTATCTGG GAGCAATCTCAGTGAGAATTCTATTATTGTTTGGGATGTGTCACGACAGGTACCATTGTCTAATCAGGTGAGTAAATTCT CTACAATTTTTTATATTTTAATTTGTAGATATCATGAATAATTATGTTTTAGTATTAACTTTACTATTTTGCGTTGACAT GAAGTGTGAATATTTAATATTTTAAGCTACTTTTATATTTATTTTAAACTAAAGCATTATCATGTCAAAACATGAAATTA AAAAAATATTGGAAATTAGTGTGAAAATTGCTTTTCTGAGACTAGGTTTGAGTCTTACATCTCACGCTCATTTTATAATA GATGAACCACCTCAAGCAATGGATGGTGATTGGTTCAAATGGTTTGACTAGTTTGACACTGTTTAAATCAATGATTCTGA GATGCCCTCAGGTTCTATAGGCTTGACCAGACCATCTATAGATCTGTTTGGTGGTTGAACCAGACCAACCAGTCCTATCT GGTTTCGAAACAATGATTCTATCAATGTTGGAGTAAACCCTCATTTTCATCTCCAATGTTTGTAAGGGTCATCAAATCAA TCTCTATACTAAAGGAATACAAAAAATGTCCTTAACCTATTCTTTTGAAGACTGATGTGACAGACAAAAAAAGTTGAGAA CTAGTATGAATGATGAGAGTGTAGTTTGGGGGATAAATTCTATCATGTTAAGTCTTGGGATAAATTTGATGTCCATTACA CATTTTAGGGACGAATCGGGTGATTCACTCATGTTTGCCGAAGAGAGTTGATGAAGAAAGTAGTATGAATAAACCACCAA ATTTGTCCATATCGTACCACTGACTTAAGAGTCGTCCTTAGCCTCAAGAAAGTCATGTTAGTCCCAAATTGACTCATTGC AAAGACTAATGTAATGGATGTTTTTAAATGTTGGGGACTTAAAATAGATTTTCTTTATGTTAGGGGCCAATTCAAAGTTT GTAGGAAATTATGGAATGAATTGGGTTATTTACTCTAGTATTATTCAGTACTTAGTCAATCCCAGATAGTGGTGCACAAC GGCTGACACCAAAAGTGCTAGTGTTATAGCGCATATTAGGATGGTCGCTATGCTGAATTTTTTATGTTGTTTCTGTAATT TATACTATATACAAAAATAGATACTCAAATGATGAAAAATACTCAAAATTCATAGCATTGACAATTAACAATTAAAATTC ATTGGTGTCTTAAGAAAAGATCACCCCTTTAGCGGTCCTGACTCCTGACACCAAACAGCATATCAACCTGGAAGAGCGGC CAAGGGCGATTATGTGCCGTGATGCTAAACCCTGATAAGCCATTCAAAGATTTGCCTCAAATGTTTTTTTCTTTTCTCCG ACATGTATTTGACAACACAACAATTATAATAATAATTGAATCAACATCTAAGGAGGTGTAATGTACTAAACACCTTTGGA AGGAATACTTCAGCAGAAAAGGCACAATGTTCTTACATCTGAAGTTCCTCCTCAAAGTCCATGTTTGTTTCTTTTCTAAT TTATGAAAATAACTGCCTTTTTTAGGTTTAATTTGAGATTATTGGCTTCTTTACCCTCCCTTTTATTGGCACCAAAAATT ACCCACCCACCAGAGCCCTTATTGCAATGCAAGTTAAACTTTCCAGACTCAATTCTTCCCAATCAAGAATCTTGCAGCTC CCATCAGGGTTCTTGGATTTTCCTCTCTGCCTTTAATTCTCTGTTCCAGCTCCTGAACCCTTTCTTCTGAACCCTCCATT CTTGAGAGAACCGTGAATAGCTCCTAGTATCTTCAGAGCTCTAATGCCAACAGCTAACGAAATAAGCTCTGATAACCCGC TTGTTCTTCATAAGATTAAAAATAGAGTGGTTCTGTGTTGTAGTTATTTTTATATCTTTCTCACATAAGCTACTAATTTT GGCTGATGAGAAAAGCACTAAACTTATTGTGAAGTTTCTGTATTTTTATTAACTTGTCATAATTATTTAAAAAGAATTCA TCTAATTAAAAAACACAAACAAACGGACCCCTAATTGGGGTAGCTGCTACACCTTTCTACTCTCAAAACACCCATGAAAC CTTTAGTTTTGCTTGCAACTTAGAAAGTCAAAGTCTCTTACAGTTTTACTACTATCGAGCTGATGCTTCTTATTCATCAC AGTGTTCACTGTTATAGAAGTATTACTCAAGTTACATGTTACAAGCTGTGAAATGCCTATATGTTTATATTGTAGGCACT TACAATTTACAATTTTTACATTGTCATTGCCTACACATCAGATTCAGTTACCATCTGTTTTTTCGAGTCTGGCTCCTCTG AAGTGAGTGACTCACTTTAGATTGTAAAGTAAGTCATAATGACCATTGATGAGTGGCTTTATTGACTTTTCAAAGTAGGT AATCACTATTAATGTTTGTGATGAGTTACTTTACCCTCTAAAATGATCTCTCAATTTAGAGGAGCCAAAACCCTGTTTTT TATCTAAATTTTATTCATGTAAACTTGTTTTCACTCTAGCGACCTATCATTTGGTAAAATATCGGTTTTCTTGATGGTTG TTAGGCAATAATATTAATGCAGTAAATGAATGTTTCAAAGAGGACAATAGTTTGTAAAATACAACATTGTTTTCAGTAAC AAATAATTTTAAAGATCTCATTTTCCTCTTCCAATGACTTATCCCTGAAATAGCTGAGATAAAATTGAAGCCAAATGCAC TGCGGTGCGTTGGCTGGAATATCTTCGATGCTTAAAATCTTCCATTACATTAATTATGTTTGATTATCCCTGAATTTTCC TTTCCTTCTTTCCCTTTATTCTGAGTAATATAGTTTCTTTATATAGAACACATTCGGCTGTAATGCGTCTCTCTCTGAAA GTTTTAGGGATTTCTGATTTATGTACATGGTTTAGATATATGTTATAACATTATTCAGGTCATTTCTGGTGCTACATGCA TTTTGGGAGTGTATCACTTTGGTCCTTTGGTCCTCTGCATCTACAAACTTTGTTATGAGGGCGTGAATTTAGATTTCAAC TGACAACATATTCTGCTTCTGAATCAGGTTTATGTAGAAGCTTATACCTGTCCCTGTGTAAGGTGCCACCCATTTGATCC TGTTTTTGTCGCCCAATCAAATGGGAATTATGTTGCAATCTTTGGTACCACGCCGCCTTACAGACTCAACAAATACAAGA GATATGAGAACCATGGGGTTTCTGGGTTCCCAATTAAGTGTAATTTCAGCAGGGATGGCAAGAAACTTGCATCTGGCTCT TCAGATGGTTCTGTTTACCTTTATGATTATCACTCATCTAAAGTTGTGAAGAAAATCAAGGCCTTTGACCAAGCATGCAT AGACGTTTCGTTTCACCCAGTTATCCCTAATGTTATTGCTTCATGCTCATGGGATGGAGGTATTTTGGTATTTGAGTAGA GTTACCTATTGTCATCCCAATTCCAGGGTAGTGAAGGGTTATGCATTTAGTTACCTGCAAGAAAATGGTTTGGAATCCGA AAGGAAAGGAAAAGAGCTTTCCCTCAGTTTATGTAGGCTGTTTCTGTGTTGTTAGTTGTTACGGATACTTAATGATTATG AAAACATGTGTATTCGTTGCCTAAATGTTTGCTTAACACTTTTTAATTTTAGTTACTATGAGAGAAAATGATTTGTAGGG ATCAGCGTAATGTGTTTGGGTTATCCCTCCTAAGTGGGGCCCAACTTTATTTTTTTCTTTTTTTGGTCACTGGCCCAACT TTATTTTATGAAAAGAAAAAAATGATTTAGTTTTTTGGGCCAAGCCCATGTTTCTTTTTATTTAAAGGGTTAAAACCCTT GATTTTTTGAAGGAGCAGCAACGATTGTCCAAAAAAAAAAGGAGCGTGAATCAGATTCACCTATTTGGCTGCAGCCGTTT TTGAGAAGAATTTTATTTCCTTGACAGATTTTTTGTTACATCATTTGTTTTCCGTTTTGGTAGAAATTTTAGTATGTGCT CTCTGTCTTTGAGCTTTTTATTTTAACCATTTCATTTGGGATTTATCTTCTCTATTTTGTTTGGAT
CDS sequence (LotjaGi3g1v0096800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCTCCTGTGCGACGCGTATTCGAATGCTTCAGACGAAGAAAGAGAGGAACAACCCAAACGACACAAGCCATCATC AAACTCTTCTTCAAACCCACCAAAACCCCATCTCTTCATTCCTAATCCTCACTACCCTCAAACACCACAACCTCCAATCC CTGGAACCTACGTCTCCAAACGACAACGCGCGTCGATGGGAAACCTCGCCGCTTCTCTCCCTAACCCTGATCCCGCTCCT TCTTCATTCATACGAACAGGGAGTATCTTGGATGTTGATACACCCCATAGCATTTTATCATTGCTGAAAAGCAAATCAAA GGGTCATCAAAACCTAAACCCAAGATCTGAAAAGCTATCTGCAACTCTATATGGCCATACAAAAGCTGTCAGTGCTATAC ATTGGTCATCAACTCATGCTCACCTCCTTGCATCTGCTGCGATGGATCATTTGGTTTGCATATGGAATGTATGGAGTAGA GATCAGAAGAAAGCATGTGTGCTAAACTTCCATAATGCTGCCGTGAAAGATGTCAAATGGTCTCAGCAAGGGCTCTTTCT ACTTTCTTGTGGATATGATTGCACATCAAGGTTAGTTGATGTTGAAAAGGGGATAGAAACCCAAGTTTTCAGAGAAGATC AAATCATTGGAGTTATAAAGTTCCACCCCGATAATTCAAGTCTCTTCCTTTCTGGAGGATCAAAGGGCCACATCAAACTA TGGGATATTAGAACTGGCAAAGTAGTGCATAACTATGATCGGAATTTAGGACCGATTCTTGATGTTGAATTTACAACGAA TGGGAAGCAATTCATTTCTTCTAGTGATGTATCTGGGAGCAATCTCAGTGAGAATTCTATTATTGTTTGGGATGTGTCAC GACAGGTACCATTGTCTAATCAGGTTTATGTAGAAGCTTATACCTGTCCCTGTGTAAGGTGCCACCCATTTGATCCTGTT TTTGTCGCCCAATCAAATGGGAATTATGTTGCAATCTTTGGTACCACGCCGCCTTACAGACTCAACAAATACAAGAGATA TGAGAACCATGGGGTTTCTGGGTTCCCAATTAAGTGTAATTTCAGCAGGGATGGCAAGAAACTTGCATCTGGCTCTTCAG ATGGTTCTGTTTACCTTTATGATTATCACTCATCTAAAGTTGTGAAGAAAATCAAGGCCTTTGACCAAGCATGCATAGAC GTTTCGTTTCACCCAGTTATCCCTAATGTTATTGCTTCATGCTCATGGGATGGAGGTATTTTGGTATTTGAGTAG
Protein sequence (LotjaGi3g1v0096800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDLLCDAYSNASDEEREEQPKRHKPSSNSSSNPPKPHLFIPNPHYPQTPQPPIPGTYVSKRQRASMGNLAASLPNPDPAP SSFIRTGSILDVDTPHSILSLLKSKSKGHQNLNPRSEKLSATLYGHTKAVSAIHWSSTHAHLLASAAMDHLVCIWNVWSR DQKKACVLNFHNAAVKDVKWSQQGLFLLSCGYDCTSRLVDVEKGIETQVFREDQIIGVIKFHPDNSSLFLSGGSKGHIKL WDIRTGKVVHNYDRNLGPILDVEFTTNGKQFISSSDVSGSNLSENSIIVWDVSRQVPLSNQVYVEAYTCPCVRCHPFDPV FVAQSNGNYVAIFGTTPPYRLNKYKRYENHGVSGFPIKCNFSRDGKKLASGSSDGSVYLYDYHSSKVVKKIKAFDQACID VSFHPVIPNVIASCSWDGGILVFE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 424 | 424 | 5.7E-185 | – | |
| MobiDBLite | 1 | 58 | 58 | - | – | |
| MobiDBLite | 9 | 24 | 16 | - | – | |
| MobiDBLite | 36 | 53 | 18 | - | – | |
| Gene3D | 100 | 424 | 325 | 2.1E-69 | ||
| SUPERFAMILY | 108 | 423 | 316 | 4.07E-55 | ||
| SMART | 116 | 156 | 41 | 1.2E-7 | ||
| Pfam | 118 | 156 | 39 | 5.3E-4 | ||
| ProSiteProfiles | 123 | 165 | 43 | 11.077 | ||
| ProSiteProfiles | 123 | 424 | 302 | 23.466 | ||
| ProSitePatterns | 143 | 157 | 15 | - | ||
| SMART | 161 | 200 | 40 | 9.7E-4 | ||
| Pfam | 167 | 198 | 32 | 0.043 | ||
| SMART | 203 | 242 | 40 | 0.003 | ||
| ProSiteProfiles | 209 | 251 | 43 | 10.876 | ||
| Pfam | 219 | 242 | 24 | 0.023 | ||
| SMART | 245 | 291 | 47 | 0.83 | ||
| SMART | 342 | 381 | 40 | 0.024 | ||
| Pfam | 348 | 381 | 34 | 0.0078 | ||
| ProSiteProfiles | 361 | 390 | 30 | 9.239 | ||
| SMART | 384 | 424 | 41 | 0.0077 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0096800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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