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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0100700 |
| Transcript ID | LotjaGi3g1v0100700.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Retinoblastoma-binding-like protein; TAIR: AT3G21060.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q5E915|RBBP_ARATH Protein RBL; TrEMBL-Plants: tr|I3SQI4|I3SQI4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0100700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:12492328..12497267) extracted from Lotus japonicus Gifu genome v1.2.
AACAAAACGACATCACCGCAAACAAAATTTCTCTCATTCATTCCCTGTTCTCTTCTTCTCCCTCACTTCACTTCCGCCAA AACCACCACCAACATCAACCTTCAACCATGAACGCCTCCATCATCGGTGCGCTTTCTCTACCTCTACCCTTTCCTCTTTG TTTCGTTTCGTTTCGTTTTCGCTAACATTCTGCTTTGTATTGAAGATCCATTGCAGGGTGATTTCCCAGAAGTAATCGAA GAGTATTTGGAATATGGTTGTATGAAATGCATTGCCTTCAACCGTCGCGGTACCCTTCTTGCTGGTACCTCCTCTTTCAC TCTCTCTCAATGATTTCTTAGCTTTCTTACTCAAATGGTGCTTTTCTGCTTTCTGGGTATCTGCGTTTTCATGCAATTTC CTTGTCGTTTTGGTTTGTGTGTGCTGTGTTTATGCTAATTGTCTGGTTTTAGAAAATGGGTCGTGGGCAAAAACTGATTT TTTCTATTTTTCAAAATTTCATGTTGATTTTGGATTTTAAGGTTTAAAGTTGCAAATTTTATGAGGGAATCCTTTATTCC TTGATGACCCAGAAAAGAAAATGTCATGATATTTTAATTTTAGGATTCGGGTATCGAAGGTGTTTGATGTTTCATGCCTT GGCTTGTTTTTGTGTTGGCTAGTTAATGGGAAAATTTTGGAACATGGGTGTTTCCATTAAGCCCTAAGCTTAGTAATGAC ATGTAAGATGGTTGTTTTACCATTGTGAGTGGTCTGGTGTGGATAAGCATGGTAGTAGTAGTAGTATGAGTGATGTGGTT GATTAGTTGATGGTGACTTCACCGTTATATTTGAGGAGTTTTATTAGACAGTGATGTTAATTTGTGCATTCTATTTAAGA AAAGAGAACAGCTGGTATACAGTGATTGTCCCTTTTTTTACTCTGCATTTCTTGAGTTTTAGTGTGAAGAGTTTATGCTG ACTTTGTATGAAGTAATAAAAAGATGCTAAGTTTTTATGCAAGCCCTGCTCAAATATGGTTGGTCACTGAATTGCCATTT ATAATTACTACATTTACTGTACAAAATCATGGTATGAACGGTTCAACCTCAAGGAACCAAAATAGATTACGATTACTGGT AAGAGCTAGCAGCAAATTTGTTACTTTGAGGTTTTGGTTTATGTTGGTTGGATAGATGTGTAAACACTTTCCAAACCTTC TATTATCTGGTTCTCATCTGCCATCTCAACCTTTTCCCTTTATGATGAAGTAGTTTTTCTGTTTTTGTGAAGTTCACTGT TTTAAAGTATCCACTTCAATTATGTGTTAAACATGATGCAATGGGTATTCTATTATATATTTCATGTACCAGTTTGGAAT AGATTTTTAGACATTTTTTCTAGGATGCACAGGTACGGGTGCGGTACCGGGTACGGGTACGGTACCGGGTACGAGGTACG GCATTTTTAGAAAATCCTAGGTACGGGTACGTTATAGGTACGTTAATATATATATTAAAATATATATATATATATATATA GTGAAGTAAAAAAATAGATATCAAATAATCTATGTTACATAATATTATTAATTACATATCAAATCTCTCAATATTCATAT ATCTTGCATATAATAACAATTCAAACACCTGGTAAAGCTTGTAAAAAAAAAAACATGGTTTCAAAGTACCCATGGCGTAC CCACGGAGTACCGGTACCCGGTACGTACCCGGTGCGGGTGCGTAGCCAATTTCAAAGTACCCGTGCTTCATAGCATTTTT TTTATGGATTAGATTTCCGTGTGAAGCTAGTATCAATGGATTTCTTGATTTATGTGGGAATTCTTTTTCTGAAGCCTGAA CTTTTTTCATGCTGTTTGCCTATTTGGTCAAATGTCGGTTCATAAATATTATAGTAAGTGTCGAACTATTATCAGATGTT TATTGGAGATATTCTGTGGTGTCAATTTTCTCATATTTGATCTTATTTTTTCAACTGAACCAGCTGGATGCAATGATGGA AGTTGTGTTATTTGGGATTTTATAACCAGGGGGATTGCTAAGGTGCTTTCTGATGATGGCTGCTCTTCTCCCATAACCAG TATCTGTTGGTCAAAATTTGGTCATCGAATTCTTGTATCTGCTGCTGATAAGTCATTAACATTGTGGGATGTTATGAGTG GTAAAAAGATAACACGAATAGTTTTGCAACAAACCCCTCTACAAGCTCGTCTTCATCCAGGTTCCTCTACCCCATCTGTC TGCTTAACATGCCCTCTCTCTTGTGCACCAATGATTGTCGACCTGAATACGGGAAACACAACTTTGCTTAAAGTTTCTGT CTCAGAGACATGCAATGGGCCAACACCTCCTCTACGCAATAAGTGCTCCGATGGGGTTACCTCCTTCACACCAACTGCTG CTTGTTTTAATAAATATGGGAATCTGGTTTATGTGGGAAACTCAAAAGGGGAAATTCTCATCAGTGATTACAAAGATGGC AAAGTGCGTGCCCTAGTTCCGACCTCGGGTGGTTCTGTCATAAAGAACATTGTCTTCAGCAGGAATGGACAGTATCTTCT TACGAATTCAAATGATCGAGTGATAAGGATCTATGAAAACCTTTTGCCTCTGAAAGGTGAAGTTAAAGCCCTTGATGACA TGGGTGAGAACCTCACTGATCTAAGCAGTATTGAGGCTCTGAAGGCTGTTGGATCTAAATGTTTAACTTTATTCCGGGAG TTTCAAGATTCCATCACAAAGGTGCACTGGAAAGCACCTGGTTTCAGTGGTGACGGTGAGTGGGTAGTTGGTGGTTCTGC TAGCAAAGGAGAGCACAAGATTTATGTATGGGATAGAGCTGGACATCTTGTCAAAATCCTTGAAGGACCTAAAGAAGCAC TTGTAGATTTAGCATGGCATCCTGTACATCCTATTGTCGTATCTGTTTCGCTGAATGGCTTAGTTTATATATGGGCAAAA GACTATACTGAGAACTGGAGTGCATTTGCTCCTGATTTCAAAGAGCTCGAGGAAAATGAGGAGTATGTAGAGCGTGAAGA TGAATTTGATCTGATTCCTGAGACTGAGAAGGTAAAAAGGGCATTACAATGGTCATGCACTTCCTAATTTCTTTTCACCT GTCCTTTTCTTTTCTGACATCATATGCTTGCAGGTGAAAGGATCTGATATTAATGAAGACGAGGAGGTTGACATTATGGA ATTCGATAAAGATGCTGCTTTCAGTGATTCCGACATGTCTCAAGAAGAGCTGTGTTTCTTGCCAGCAACTCCTAGCCGGG ATTCTCCTGAGCAGCAAGAGAAGTGTGTGGAAAGTTCTTCAAAATTGGTAGACAGCAATAACACTGGATCCCCTCTTTCA GAAGAAGCAGGACCAAATGGACATGCGATGGATCACGCGTCAAGTCCTCTTGCAGGTAACATCATGATGTGCATTATATG CTTATAACAAAGTATTTTAATTCTCAAGAACTCCAAATTCTAAACCCCTTCCCTCTAATAAATAAACGGTATAACATAAC ACAAGCCATTCTCAATTCGAGATCAAACACGCCATAATGCCCTCATAAATCAAAGCTAATAAATCATAATTTTGTGATTT TGCCATAAAATTTATCTCCTTGGTTTTAGTTTGGAATTTGCAACTTTCAACTACACTAACTCTAATTTAAAAGAAATGGA AAATTTACATTTATGTTTGATGTGTTAGTTACAGTCTAGGGCCAAATAACATCTTAGAGTGATTATCATGTTTGGTCTCA ATTGTGATTATAGCAATGAATGAGTTTCACTGTGTTACCAGTGGTTGATAGAGTTGTGAATGTGTTGTGTATACATTTTT CTGATATGATTGTGACTCTTGTGAGGCCTTCTATAATAATATATATTTTTCTGTTTCAAAGATGATGCTGGAGGTCGCAT GAAAAGAAAGCGGAAACCTTCAGAGAAGGTGTTGGAGTTGCAAGCAGAAAAAGTTAAGAAACCCTCAAAATCTAGCAAAT CTGCAAAATCTAAGAGCAAACCTTCGGTTGATCAGGATGATGGTAATGGTTTTTATGGTGATGGGCTTTATGATGATTAA TTGTAAAGCGTATTATATTGCTGCTGTAGGTATATTGCGCAAAATTCTGTATGAAATGATATCATTTAGCACAATATGAT TAGCTATGCGCTCTTTTGTCTTGTTAAAGGATTACAAATTTCAGCAAACTGTTGACACAAAAGTGCTTAGTTAAGTATGA GCAAAAAATAGCAATTGAAATTCATTGCAAACCTCTATTAAGCAAAGTAACTTTGAGATGTAAGTTGAAGGATAACAAGG GTAAAGAAACATGAAATTAGTTTACACATACTTCTTTACAATCAAAAGTGTTTCATCAAGACTTCATTTTACAATACTCA ACTGATCAATGATTAGCGGGGAATTGGACTGTTTGCTTTTCTATGTCTATTTGGCATTCAGAGATTCTTCGCGCCGAGCT GCTTGGTATCTTTCATGGACCTCAGTTATGTTTGGACCTTGGCTATAGGGTTGTAAATATGTATTTGGATTCAACCTTAG TGGTGCGTCTGCTTGCGAAAGCATCACAAGTTGCACTTTTATGCGAGTATTCTTAGTGGAATTGTTGCTATGTGTAGGAA GCCATTATGTGTTCTGCTAAGGCACACTTTCAATAAAAGGAATGCGCCTGTAGATTTCCTTGCAAAGTTGGGGTCCTTGT CGACTCATGATTCGGTGGTCTACCATGCTCCTTCGAAGGCTCTAGCTTACCTCCTCCTAGCAGATTTCATCGGTTTCCTG ACACTTAGGTCGTAGATTGTCTTTATTTAACTTCTTGTACCAAAAAATGGAAAACAAAGCTTAACATTATGTCTTAATTT CATTCATTTTGTTCTACTCCACCCTCTTTTACTATGTTCCCCTAAACAAAAACAAAAAAG
CDS sequence (LotjaGi3g1v0100700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACGCCTCCATCATCGATCCATTGCAGGGTGATTTCCCAGAAGTAATCGAAGAGTATTTGGAATATGGTTGTATGAA ATGCATTGCCTTCAACCGTCGCGGTACCCTTCTTGCTGCTGGATGCAATGATGGAAGTTGTGTTATTTGGGATTTTATAA CCAGGGGGATTGCTAAGGTGCTTTCTGATGATGGCTGCTCTTCTCCCATAACCAGTATCTGTTGGTCAAAATTTGGTCAT CGAATTCTTGTATCTGCTGCTGATAAGTCATTAACATTGTGGGATGTTATGAGTGGTAAAAAGATAACACGAATAGTTTT GCAACAAACCCCTCTACAAGCTCGTCTTCATCCAGGTTCCTCTACCCCATCTGTCTGCTTAACATGCCCTCTCTCTTGTG CACCAATGATTGTCGACCTGAATACGGGAAACACAACTTTGCTTAAAGTTTCTGTCTCAGAGACATGCAATGGGCCAACA CCTCCTCTACGCAATAAGTGCTCCGATGGGGTTACCTCCTTCACACCAACTGCTGCTTGTTTTAATAAATATGGGAATCT GGTTTATGTGGGAAACTCAAAAGGGGAAATTCTCATCAGTGATTACAAAGATGGCAAAGTGCGTGCCCTAGTTCCGACCT CGGGTGGTTCTGTCATAAAGAACATTGTCTTCAGCAGGAATGGACAGTATCTTCTTACGAATTCAAATGATCGAGTGATA AGGATCTATGAAAACCTTTTGCCTCTGAAAGGTGAAGTTAAAGCCCTTGATGACATGGGTGAGAACCTCACTGATCTAAG CAGTATTGAGGCTCTGAAGGCTGTTGGATCTAAATGTTTAACTTTATTCCGGGAGTTTCAAGATTCCATCACAAAGGTGC ACTGGAAAGCACCTGGTTTCAGTGGTGACGGTGAGTGGGTAGTTGGTGGTTCTGCTAGCAAAGGAGAGCACAAGATTTAT GTATGGGATAGAGCTGGACATCTTGTCAAAATCCTTGAAGGACCTAAAGAAGCACTTGTAGATTTAGCATGGCATCCTGT ACATCCTATTGTCGTATCTGTTTCGCTGAATGGCTTAGTTTATATATGGGCAAAAGACTATACTGAGAACTGGAGTGCAT TTGCTCCTGATTTCAAAGAGCTCGAGGAAAATGAGGAGTATGTAGAGCGTGAAGATGAATTTGATCTGATTCCTGAGACT GAGAAGGTGAAAGGATCTGATATTAATGAAGACGAGGAGGTTGACATTATGGAATTCGATAAAGATGCTGCTTTCAGTGA TTCCGACATGTCTCAAGAAGAGCTGTGTTTCTTGCCAGCAACTCCTAGCCGGGATTCTCCTGAGCAGCAAGAGAAGTGTG TGGAAAGTTCTTCAAAATTGGTAGACAGCAATAACACTGGATCCCCTCTTTCAGAAGAAGCAGGACCAAATGGACATGCG ATGGATCACGCGTCAAGTCCTCTTGCAGATGATGCTGGAGGTCGCATGAAAAGAAAGCGGAAACCTTCAGAGAAGGTGTT GGAGTTGCAAGCAGAAAAAGTTAAGAAACCCTCAAAATCTAGCAAATCTGCAAAATCTAAGAGCAAACCTTCGGTTGATC AGGATGATGGTATATTGCGCAAAATTCTGTATGAAATGGATTACAAATTTCAGCAAACTGTTGACACAAAAGTGCTTAGT TAA
Protein sequence (LotjaGi3g1v0100700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNASIIDPLQGDFPEVIEEYLEYGCMKCIAFNRRGTLLAAGCNDGSCVIWDFITRGIAKVLSDDGCSSPITSICWSKFGH RILVSAADKSLTLWDVMSGKKITRIVLQQTPLQARLHPGSSTPSVCLTCPLSCAPMIVDLNTGNTTLLKVSVSETCNGPT PPLRNKCSDGVTSFTPTAACFNKYGNLVYVGNSKGEILISDYKDGKVRALVPTSGGSVIKNIVFSRNGQYLLTNSNDRVI RIYENLLPLKGEVKALDDMGENLTDLSSIEALKAVGSKCLTLFREFQDSITKVHWKAPGFSGDGEWVVGGSASKGEHKIY VWDRAGHLVKILEGPKEALVDLAWHPVHPIVVSVSLNGLVYIWAKDYTENWSAFAPDFKELEENEEYVEREDEFDLIPET EKVKGSDINEDEEVDIMEFDKDAAFSDSDMSQEELCFLPATPSRDSPEQQEKCVESSSKLVDSNNTGSPLSEEAGPNGHA MDHASSPLADDAGGRMKRKRKPSEKVLELQAEKVKKPSKSSKSAKSKSKPSVDQDDGILRKILYEMDYKFQQTVDTKVLS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 525 | 525 | 4.0E-192 | ||
| SMART | 13 | 51 | 39 | 0.11 | ||
| ProSiteProfiles | 19 | 104 | 86 | 13.791 | ||
| Gene3D | 22 | 256 | 235 | 1.1E-28 | ||
| SUPERFAMILY | 23 | 363 | 341 | 1.37E-41 | ||
| Pfam | 28 | 51 | 24 | 0.0048 | ||
| ProSitePatterns | 38 | 52 | 15 | - | ||
| SMART | 54 | 95 | 42 | 0.0019 | ||
| ProSiteProfiles | 63 | 104 | 42 | 10.442 | ||
| Pfam | 65 | 95 | 31 | 0.077 | ||
| SMART | 160 | 201 | 42 | 490.0 | ||
| SMART | 203 | 244 | 42 | 0.68 | ||
| Gene3D | 261 | 473 | 213 | 2.5E-9 | ||
| SMART | 276 | 323 | 48 | 110.0 | ||
| Pfam | 278 | 323 | 46 | 0.2 | ||
| SMART | 325 | 364 | 40 | 0.0028 | ||
| MobiDBLite | 439 | 538 | 100 | - | – | |
| MobiDBLite | 443 | 472 | 30 | - | – | |
| MobiDBLite | 492 | 519 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | Set1C/COMPASS complex | A conserved protein complex that catalyzes methylation of histone H3. In Saccharomyces the complex contains Shg1p, Sdc1p, Swd1p, Swd2p, Swd3p, Spp1p, Bre2p, and the trithorax-related Set1p; in mammals it contains the catalytic subunit (SETD1A or SETD1B), WDR5, WDR82, RBBP5, ASH2L/ASH2, CXXC1/CFP1, HCFC1 and DPY30. |
Expression pattern of LotjaGi3g1v0100700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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