Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0100700 |
| Transcript ID | LotjaGi3g1v0100700.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Retinoblastoma-binding-like protein; TAIR: AT3G21060.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q5E915|RBBP_ARATH Protein RBL; TrEMBL-Plants: tr|I3SQI4|I3SQI4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0100700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:12493188..12497160) extracted from Lotus japonicus Gifu genome v1.2.
ATGAACGCCTCCATCATCGGTGCGCTTTCTCTACCTCTACCCTTTCCTCTTTGTTTCGTTTCGTTTCGTTTTCGCTAACA TTCTGCTTTGTATTGAAGATCCATTGCAGGGTGATTTCCCAGAAGTAATCGAAGAGTATTTGGAATATGGTTGTATGAAA TGCATTGCCTTCAACCGTCGCGGTACCCTTCTTGCTGGTACCTCCTCTTTCACTCTCTCTCAATGATTTCTTAGCTTTCT TACTCAAATGGTGCTTTTCTGCTTTCTGGGTATCTGCGTTTTCATGCAATTTCCTTGTCGTTTTGGTTTGTGTGTGCTGT GTTTATGCTAATTGTCTGGTTTTAGAAAATGGGTCGTGGGCAAAAACTGATTTTTTCTATTTTTCAAAATTTCATGTTGA TTTTGGATTTTAAGGTTTAAAGTTGCAAATTTTATGAGGGAATCCTTTATTCCTTGATGACCCAGAAAAGAAAATGTCAT GATATTTTAATTTTAGGATTCGGGTATCGAAGGTGTTTGATGTTTCATGCCTTGGCTTGTTTTTGTGTTGGCTAGTTAAT GGGAAAATTTTGGAACATGGGTGTTTCCATTAAGCCCTAAGCTTAGTAATGACATGTAAGATGGTTGTTTTACCATTGTG AGTGGTCTGGTGTGGATAAGCATGGTAGTAGTAGTAGTATGAGTGATGTGGTTGATTAGTTGATGGTGACTTCACCGTTA TATTTGAGGAGTTTTATTAGACAGTGATGTTAATTTGTGCATTCTATTTAAGAAAAGAGAACAGCTGGTATACAGTGATT GTCCCTTTTTTTACTCTGCATTTCTTGAGTTTTAGTGTGAAGAGTTTATGCTGACTTTGTATGAAGTAATAAAAAGATGC TAAGTTTTTATGCAAGCCCTGCTCAAATATGGTTGGTCACTGAATTGCCATTTATAATTACTACATTTACTGTACAAAAT CATGGTATGAACGGTTCAACCTCAAGGAACCAAAATAGATTACGATTACTGGTAAGAGCTAGCAGCAAATTTGTTACTTT GAGGTTTTGGTTTATGTTGGTTGGATAGATGTGTAAACACTTTCCAAACCTTCTATTATCTGGTTCTCATCTGCCATCTC AACCTTTTCCCTTTATGATGAAGTAGTTTTTCTGTTTTTGTGAAGTTCACTGTTTTAAAGTATCCACTTCAATTATGTGT TAAACATGATGCAATGGGTATTCTATTATATATTTCATGTACCAGTTTGGAATAGATTTTTAGACATTTTTTCTAGGATG CACAGGTACGGGTGCGGTACCGGGTACGGGTACGGTACCGGGTACGAGGTACGGCATTTTTAGAAAATCCTAGGTACGGG TACGTTATAGGTACGTTAATATATATATTAAAATATATATATATATATATATAGTGAAGTAAAAAAATAGATATCAAATA ATCTATGTTACATAATATTATTAATTACATATCAAATCTCTCAATATTCATATATCTTGCATATAATAACAATTCAAACA CCTGGTAAAGCTTGTAAAAAAAAAAACATGGTTTCAAAGTACCCATGGCGTACCCACGGAGTACCGGTACCCGGTACGTA CCCGGTGCGGGTGCGTAGCCAATTTCAAAGTACCCGTGCTTCATAGCATTTTTTTTATGGATTAGATTTCCGTGTGAAGC TAGTATCAATGGATTTCTTGATTTATGTGGGAATTCTTTTTCTGAAGCCTGAACTTTTTTCATGCTGTTTGCCTATTTGG TCAAATGTCGGTTCATAAATATTATAGTAAGTGTCGAACTATTATCAGATGTTTATTGGAGATATTCTGTGGTGTCAATT TTCTCATATTTGATCTTATTTTTTCAACTGAACCAGCTGGATGCAATGATGGAAGTTGTGTTATTTGGGATTTTATAACC AGGGGGATTGCTAAGGTGCTTTCTGATGATGGCTGCTCTTCTCCCATAACCAGTATCTGTTGGTCAAAATTTGGTCATCG AATTCTTGTATCTGCTGCTGATAAGTCATTAACATTGTGGGATGTTATGAGTGGTAAAAAGATAACACGAATAGTTTTGC AACAAACCCCTCTACAAGCTCGTCTTCATCCAGGTTCCTCTACCCCATCTGTCTGCTTAACATGCCCTCTCTCTTGTGCA CCAATGATTGTCGACCTGAATACGGGAAACACAACTTTGCTTAAAGTTTCTGTCTCAGAGACATGCAATGGGCCAACACC TCCTCTACGCAATAAGTGCTCCGATGGGGTTACCTCCTTCACACCAACTGCTGCTTGTTTTAATAAATATGGGAATCTGG TTTATGTGGGAAACTCAAAAGGGGAAATTCTCATCAGTGATTACAAAGATGGCAAAGTGCGTGCCCTAGTTCCGACCTCG GGTGGTTCTGTCATAAAGAACATTGTCTTCAGCAGGAATGGACAGTATCTTCTTACGAATTCAAATGATCGAGTGATAAG GATCTATGAAAACCTTTTGCCTCTGAAAGGTGAAGTTAAAGCCCTTGATGACATGGGTGAGAACCTCACTGATCTAAGCA GTATTGAGGCTCTGAAGGCTGTTGGATCTAAATGTTTAACTTTATTCCGGGAGTTTCAAGATTCCATCACAAAGGTGCAC TGGAAAGCACCTGGTTTCAGTGGTGACGGTGAGTGGGTAGTTGGTGGTTCTGCTAGCAAAGGAGAGCACAAGATTTATGT ATGGGATAGAGCTGGACATCTTGTCAAAATCCTTGAAGGACCTAAAGAAGCACTTGTAGATTTAGCATGGCATCCTGTAC ATCCTATTGTCGTATCTGTTTCGCTGAATGGCTTAGTTTATATATGGGCAAAAGACTATACTGAGAACTGGAGTGCATTT GCTCCTGATTTCAAAGAGCTCGAGGAAAATGAGGAGTATGTAGAGCGTGAAGATGAATTTGATCTGATTCCTGAGACTGA GAAGGTAAAAAGGGCATTACAATGGTCATGCACTTCCTAATTTCTTTTCACCTGTCCTTTTCTTTTCTGACATCATATGC TTGCAGGTGAAAGGATCTGATATTAATGAAGACGAGGAGGTTGACATTATGGAATTCGATAAAGATGCTGCTTTCAGTGA TTCCGACATGTCTCAAGAAGAGCTGTGTTTCTTGCCAGCAACTCCTAGCCGGGATTCTCCTGAGCAGCAAGAGAAGTGTG TGGAAAGTTCTTCAAAATTGGTAGACAGCAATAACACTGGATCCCCTCTTTCAGAAGAAGCAGGACCAAATGGACATGCG ATGGATCACGCGTCAAGTCCTCTTGCAGGTAACATCATGATGTGCATTATATGCTTATAACAAAGTATTTTAATTCTCAA GAACTCCAAATTCTAAACCCCTTCCCTCTAATAAATAAACGGTATAACATAACACAAGCCATTCTCAATTCGAGATCAAA CACGCCATAATGCCCTCATAAATCAAAGCTAATAAATCATAATTTTGTGATTTTGCCATAAAATTTATCTCCTTGGTTTT AGTTTGGAATTTGCAACTTTCAACTACACTAACTCTAATTTAAAAGAAATGGAAAATTTACATTTATGTTTGATGTGTTA GTTACAGTCTAGGGCCAAATAACATCTTAGAGTGATTATCATGTTTGGTCTCAATTGTGATTATAGCAATGAATGAGTTT CACTGTGTTACCAGTGGTTGATAGAGTTGTGAATGTGTTGTGTATACATTTTTCTGATATGATTGTGACTCTTGTGAGGC CTTCTATAATAATATATATTTTTCTGTTTCAAAGATGATGCTGGAGGTCGCATGAAAAGAAAGCGGAAACCTTCAGAGAA GGTGTTGGAGTTGCAAGCAGAAAAAGTTAAGAAACCCTCAAAATCTAGCAAATCTGCAAAATCTAAGAGCAAACCTTCGG TTGATCAGGATGATGGTAATGGTTTTTATGGTGATGGGCTTTATGATGATTAA
CDS sequence (LotjaGi3g1v0100700.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACGCCTCCATCATCGATCCATTGCAGGGTGATTTCCCAGAAGTAATCGAAGAGTATTTGGAATATGGTTGTATGAA ATGCATTGCCTTCAACCGTCGCGGTACCCTTCTTGCTGCTGGATGCAATGATGGAAGTTGTGTTATTTGGGATTTTATAA CCAGGGGGATTGCTAAGGTGCTTTCTGATGATGGCTGCTCTTCTCCCATAACCAGTATCTGTTGGTCAAAATTTGGTCAT CGAATTCTTGTATCTGCTGCTGATAAGTCATTAACATTGTGGGATGTTATGAGTGGTAAAAAGATAACACGAATAGTTTT GCAACAAACCCCTCTACAAGCTCGTCTTCATCCAGGTTCCTCTACCCCATCTGTCTGCTTAACATGCCCTCTCTCTTGTG CACCAATGATTGTCGACCTGAATACGGGAAACACAACTTTGCTTAAAGTTTCTGTCTCAGAGACATGCAATGGGCCAACA CCTCCTCTACGCAATAAGTGCTCCGATGGGGTTACCTCCTTCACACCAACTGCTGCTTGTTTTAATAAATATGGGAATCT GGTTTATGTGGGAAACTCAAAAGGGGAAATTCTCATCAGTGATTACAAAGATGGCAAAGTGCGTGCCCTAGTTCCGACCT CGGGTGGTTCTGTCATAAAGAACATTGTCTTCAGCAGGAATGGACAGTATCTTCTTACGAATTCAAATGATCGAGTGATA AGGATCTATGAAAACCTTTTGCCTCTGAAAGGTGAAGTTAAAGCCCTTGATGACATGGGTGAGAACCTCACTGATCTAAG CAGTATTGAGGCTCTGAAGGCTGTTGGATCTAAATGTTTAACTTTATTCCGGGAGTTTCAAGATTCCATCACAAAGGTGC ACTGGAAAGCACCTGGTTTCAGTGGTGACGGTGAGTGGGTAGTTGGTGGTTCTGCTAGCAAAGGAGAGCACAAGATTTAT GTATGGGATAGAGCTGGACATCTTGTCAAAATCCTTGAAGGACCTAAAGAAGCACTTGTAGATTTAGCATGGCATCCTGT ACATCCTATTGTCGTATCTGTTTCGCTGAATGGCTTAGTTTATATATGGGCAAAAGACTATACTGAGAACTGGAGTGCAT TTGCTCCTGATTTCAAAGAGCTCGAGGAAAATGAGGAGTATGTAGAGCGTGAAGATGAATTTGATCTGATTCCTGAGACT GAGAAGGTGAAAGGATCTGATATTAATGAAGACGAGGAGGTTGACATTATGGAATTCGATAAAGATGCTGCTTTCAGTGA TTCCGACATGTCTCAAGAAGAGCTGTGTTTCTTGCCAGCAACTCCTAGCCGGGATTCTCCTGAGCAGCAAGAGAAGTGTG TGGAAAGTTCTTCAAAATTGGTAGACAGCAATAACACTGGATCCCCTCTTTCAGAAGAAGCAGGACCAAATGGACATGCG ATGGATCACGCGTCAAGTCCTCTTGCAGATGATGCTGGAGGTCGCATGAAAAGAAAGCGGAAACCTTCAGAGAAGGTGTT GGAGTTGCAAGCAGAAAAAGTTAAGAAACCCTCAAAATCTAGCAAATCTGCAAAATCTAAGAGCAAACCTTCGGTTGATC AGGATGATGGTAATGGTTTTTATGGTGATGGGCTTTATGATGATTAA
Protein sequence (LotjaGi3g1v0100700.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNASIIDPLQGDFPEVIEEYLEYGCMKCIAFNRRGTLLAAGCNDGSCVIWDFITRGIAKVLSDDGCSSPITSICWSKFGH RILVSAADKSLTLWDVMSGKKITRIVLQQTPLQARLHPGSSTPSVCLTCPLSCAPMIVDLNTGNTTLLKVSVSETCNGPT PPLRNKCSDGVTSFTPTAACFNKYGNLVYVGNSKGEILISDYKDGKVRALVPTSGGSVIKNIVFSRNGQYLLTNSNDRVI RIYENLLPLKGEVKALDDMGENLTDLSSIEALKAVGSKCLTLFREFQDSITKVHWKAPGFSGDGEWVVGGSASKGEHKIY VWDRAGHLVKILEGPKEALVDLAWHPVHPIVVSVSLNGLVYIWAKDYTENWSAFAPDFKELEENEEYVEREDEFDLIPET EKVKGSDINEDEEVDIMEFDKDAAFSDSDMSQEELCFLPATPSRDSPEQQEKCVESSSKLVDSNNTGSPLSEEAGPNGHA MDHASSPLADDAGGRMKRKRKPSEKVLELQAEKVKKPSKSSKSAKSKSKPSVDQDDGNGFYGDGLYDD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 525 | 525 | 3.7E-192 | ||
| SMART | 13 | 51 | 39 | 0.11 | ||
| ProSiteProfiles | 19 | 104 | 86 | 13.791 | ||
| Gene3D | 22 | 256 | 235 | 1.0E-28 | ||
| SUPERFAMILY | 23 | 363 | 341 | 1.33E-41 | ||
| Pfam | 28 | 51 | 24 | 0.0046 | ||
| ProSitePatterns | 38 | 52 | 15 | - | ||
| SMART | 54 | 95 | 42 | 0.0019 | ||
| ProSiteProfiles | 63 | 104 | 42 | 10.442 | ||
| Pfam | 65 | 95 | 31 | 0.075 | ||
| SMART | 160 | 201 | 42 | 490.0 | ||
| SMART | 203 | 244 | 42 | 0.68 | ||
| Gene3D | 261 | 473 | 213 | 2.4E-9 | ||
| SMART | 276 | 323 | 48 | 110.0 | ||
| Pfam | 278 | 323 | 46 | 0.2 | ||
| SMART | 325 | 364 | 40 | 0.0028 | ||
| MobiDBLite | 439 | 548 | 110 | - | – | |
| MobiDBLite | 443 | 472 | 30 | - | – | |
| MobiDBLite | 492 | 519 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | Set1C/COMPASS complex | A conserved protein complex that catalyzes methylation of histone H3. In Saccharomyces the complex contains Shg1p, Sdc1p, Swd1p, Swd2p, Swd3p, Spp1p, Bre2p, and the trithorax-related Set1p; in mammals it contains the catalytic subunit (SETD1A or SETD1B), WDR5, WDR82, RBBP5, ASH2L/ASH2, CXXC1/CFP1, HCFC1 and DPY30. |
Expression pattern of LotjaGi3g1v0100700.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…