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LotjaGi3g1v0100800.1

Overview

Field Value
Gene ID LotjaGi3g1v0100800
Transcript ID LotjaGi3g1v0100800.1
Lotus japonicus genome version Gifu v1.2
Description Disease resistance protein (TIR-NBS-LRR class); TAIR: AT5G36930.1 Disease resistance protein (TIR-NBS-LRR class) family; Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|G7LF48|G7LF48_MEDTR Disease resistance protein (TIR-NBS-LRR class); Found in the gene: LotjaGi3g1v0100800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:12505846..12511199) extracted from Lotus japonicus Gifu genome v1.2.

CTCAAGCTGAAGCAGTTGACAAAATTGTTAAGGACGTTTCGACAAAACTAGAAAAGACAATTTTGTTCATTACTGAATAT CCGGTTGGATTAGATGACCAAGTGGAAAAAGTGATTGGGTTTAGAGAAGATCGTTCTAAAAGTGTTTTTACGGTAGGGAT ATGGGGAATGGGAGGATTGGGTAAGACAACCTTAGCCAAAGCCATCTACAATAAAATTCATGGTGAATTTGAAGGTACAA GTTTTATTGAAAACATTAGAGAAGTTTGTGAAAATGATAGCAGATGGCAGATGCATTTACAAGAACAACTTCTTTCAGAT GTTCTGGAAACACAAGTAAAGATACATAGTACTTCATTTGGGATAAGTATGATTCAGAAGAGACTTTCTGGAAGAAAGGC ACTGGTTATACTTGATGATGTGACCACGTTTGTGCAATTAAAAGCCCTATGTGCAAATCGTAAATGGTTAGGTGTTGGAA GTGTACTAATTGTTACAACCAGAGATGTACGACTACTTAATTTACTTAAAGTTGACCGTGTCTGTAGAATGAAGGAAATG GACCAAAATGACTCCCTTGAGCTTTTCAGTTGGCATGCTTTCAGACAAGCAAGTCCAAGAAAAGACTTCATTGAACTCTC AAGAAACGTAGTTGCTTACTGTGGAGGATTACCACTAGCTCTTGAAGTCCTTGGATCTTACTTACATGAGAGGAAGAAAA AAGAATGGAGAAGTGTATTGTCAAAACTGAAGATGATTCCCAATGATCAAGTCCAAGAGAAACTCAGAATAAGTTATGAC GGTTTAAAGGATGAGCTGCAAAAGGATATATTTCTTGACATATGCTGTTTCTTTATTGGCAAAGGTAGAGCGTATGTTAC AGAGATATTAAATGGCTGTGGACTTTATGCTGATATTGGAATAACTGTCCTCATAGAGAGGAGCCTCATAAAAGTTGAAA GGAATAACAAGCTTGGGATACATGATCTGGTTCGAGACATGGGAAGAAAAATTGTTCGTGAAAGTTCAACAAAAGAGTCT GGGAAGCGTACTCGATTGTGGTCTCCTGAGGATGTACATGATGTTTTGACAAATAATACTGTAAGAACTCTCTCTGTATA GAGTTTCAAACTTCAAATTACTCTCCAAAATCTTATCGAGATGATTATTTTTTTACTTATTTTTTCTATTCATAAATACG CATATGATGTTTTGCCTTGTCATGTTCATTAAAAGTGTAGTTAAGGTTGCACCACTGCAACTTTATGCTCCATTTTCTAG TGAGCAATGAAAAGGGCTTCCCCTTACTTTTCTCTGCTTTTTCTTTTCTTCACATGTAGGGAACAAAAACTGTTGAGGGG TTGGTTTTGAATTTGCCAAGAACTGGTAGGATTTCCTTCAATGTTAATGCTTTCAAGGAGATGAAGAAATTGAGACTTTT GCAACTTGTTAGTGTTGAACTCACAGGAGATTATAAGCACCTTTCCAAAGAATTGAAATGGGTCTATTGGAGAGAATGTG CTTTCAAATATATACCGGGTGACTTTTATCAGGGTAATCTAGTTGTTATGGAACTAAAACACAGCAATATTATACACGTC TGGAAGGAAGACAAGGTATAATATTACCATTTTGTTTTAAAACTCTGCTTGATGACAATTGTACGTAATTGCTACCACTT TTCTTTTTTCCATTTTCTTCTCTAATATTTCTCTTATACATTTATCTTCTTGCAGTTATTGAAGAAGCTAAAAATTCTCA ATCTTAGTCATTCTAGGTACTTGAAAAAAACACCTGACTTTTCAAAATTACCGAATCTAGAAAAGCTCATTATGAAAGAT TGTCCAAGTTTGAGAGAGGTACACCAGTCCATTGGGGATCTGAGTAAGATTCTTCTAATAAATTTGAAGGACTGTACAAG CCTTAGCAATCTCCCAAGGAAGATCTATAAGTTGAAATCTTTGAAAACTCTTATCATTTCCGGCTGTTCAAAGATTGACA AGTTGGAAGAAGATATAGAGCAGATGGAATCCTTGACAACTCTGATAGCAAACGGCACAGCTGTAAAAGAAGTGCCCTAT TCAGTAGTAAGATTGAAAAGCATGGGATATATATCGCTATGAGATTATGAAGGATTGTCAAGTGTTGTTTTTCCTTTTCT CATTTGGTCCTGGTTGTCACCAACAATGAATTCCCTACCCCGTATTCCCCCATTTGGGGGCATGTCACTGTCTCTTGTTT CCTTAAATGTGCCGAATGATAATTCGGGTTTATATATTACCATTGCTTCCCAGCCTTTCAAATCTTAGAAGTGTTAAGAT ACAATGCGGCTCTTTGGATGGCTCGAAATGATATCATTTTTAATAATAAGCTATTTGATGCAGAAGCTCTTTGGGAGTCA CACATGTTCCAGTTGTTCACTTGGATAAAAGCTTGGTGGAAAGAATGTCCTTATGGTTTTGATCAGTTTGAAAGAGGATA CACAAAAATTGTTTTGGATCGGAAGGCTAGCTCTCGGCTTATCTTGCCTTGGAAACCTCCACATGGTATGAATTTGAAAT TTAATGTGGATGGCTCCTTTCAAGCTGGCAAAGCTGGTATTGGGGGAATTTTGAGGAATAAGGAGGGAAAAGTGTTGGGG AAATTTTCCAGAAGGGTGGAGGCTCGGCGGGCGGATGAGGCGGAGGTTTTGGCTATCTTATATGCCTTGTTGTTTTGTCA GCAGTTCATGGTTCGCACTATAGAAATTGAGAGTGACTCAGTTCTTGCTGTGGGTTGGGTGTGTGGGGATAAAAGTAGAC CTTGGAACCTAACAAATGAGCTGAATATGATAGATTATTTATTTCCTTTGGTAGCCTGTACTGGGGTGAGTCATATTTTA AGGGAAGGAAATGCGGAGGCGGATGAACTGGCTAAGGAGGGATGTTTCCGTGAGGAACAACTTTGGTCTTTTGAGGGCCA AGGATAAATGCTGACATATTTTGCTTTTTGTTTGGTGTTGTTTACTTTTATGCAGGCCGTGGGAAGCTTCTAGGTGCTGC TGCATATTTTATACAAAATAAAAATAAATATCAATGTATGTTGGTGCCTTGCTGAGATTTCGATATCCTCTAATTGTTGT TGGAGCTTGCTGTTTTTTGGCTGCTGTATGCTGGTGCTGATACTGTGGACTGTCGCTGATGTGTTGTTGCTGTCGTTGCT GTTGCTGTCGCTGCTGCTGTTGTCGTTGTGGTGCTTGCTGTTACTGATATCTGTTTTGCTGTTGCTGTTACTGTTGCTGC TGTTGCTGTCGTCGTTGTTTGCTGTTGCTGGCGTCGTTGTTTGCTGTTGCTGATATCTGTTTTGCTGTTGCTGTTGCTGC TGTTGCTGTCGTCGTTGTCTGCTGTTGCTGATATCTGTTTTTCGCTTACTGTTGCTGCTTTATTCTCGTTGCTGTGTGGT TTATGCTATTTTTCCTGTTTGGTTTTGGAGCTGTTTTACTGATGACTATTCAAGTCTGCTACGGACTACAGATTTGCAAA GGAATATTTACTACTGTCTTGATTAATTTCTTTAGTTGCAGTTTGGCTTTCCCAAGTCGGTGGTACTCTTTTTCCTTGCT AGGTTTTTATCCCATTGGGTTTTTCCTAGCAAGGTTTTAATGAGGCTACCTCTTGGGATTCTGTTAGAAGCCATTCTGTG GGTTGGTGGTGGGTTTGTGCATTTCCTATTGCACCTTTGCTATTGTAATGGTCTTTCTTGGACATCTTGTACTTCCTCTA GTCTTGGGTCACAATTTTGGCTCAGGCATCATTCTCAATAATATACATTTCATTTTCAAAAAAAAAAGATACAATGCGGC TCAGAGATTCAACTAACTCAAGAATTAAAAAGATCTCTTGGTGATGTATATGATGCCAATTTTGCTGAACCAGTAACAAT ATCACATGCATCACAAGTTTCAGAGTTTTCCTTGAGATCACTTTTAATTCGAATGGGAAGTAGCCACTTAGTCATCGATA CTCTTGGAAAAAGGATTGCACAGGTTTGTTTCCTATCATCTCATCTTTATTGATCAATATTAATTTAGTTTCCTTGTCTT TGTTTTTCTTCATGAAATATACTATTATTATCATAAACATTCTCCTCTTCGAATTCAGAATGACACTATAAGTTGCTCAA AAAGTCCAACTGGATAACATAAATGACCAAACATATGTTCATGACACAGGGATTGGCATCCAATGATTCTTCCAATTTTT TCCTTCCGGGTGACACTTATCCTTCTTGGTTAGCCTATACAGGTGAAGGACCTTCAGTAAGTTTTGAGGTGCCTGCTGAC AGATATTGTAGCAGGAAGGGAATAATTTTATGTGTTGTTTATTCTTCAACACCTGAAAACATTGCAAGTGAAAACCTTAT TAGTATCTTGATTATTAATTACACAAAGCTCACCATTCACATATTCAAGCGAGACACAGTAAGCTCCTTTAATGATGAAG ATTGGCAGAGTGTAATATCAAATCTAGGTCCTGGTGACAATGTAGAGATTTTTGTTGCTTTTGGGCATGGATTGATTGTT AAAGAGACAGCTGTGTATCTAATATATGGTCAGTCAAATGCTATGCAAATTGAGCCATCAATTATTATGGAGGAGGATGA GTCATCTATTAAGGTGGTTATAGAGCTATTGTCTGAAGTGAACTTGCTTCCATCAGTTAATGTGGAAATGGGGCCTTCAC TTGAAATAAATGTGCAGCCATCACCTAATGTGGAAATGGAGCCTTCACCTGAAATGAGTGGCTGCTGTCACATATTGTGA AAATAGAGTCATCACCTTACAAGGCAATGAAGCCATCAACAAAGCCTCCTCTATGCTTGAGTCAGAATAGAGGTTTCAAC AATTTTTTATTGGGCATGCCTTTATCCTAATATGGGATTCCCTTGTTTTATGTGTTTGCAATATTTTCAAGGAGGGAGGA GGGACAGCCCTATGCTGTATATATATAGAGGAGAGTTTATGTGGTTATTATTTGTTTCGATTATTGTGGTTCTGAAAATG TTGTTGACAATCATCTCATTACTATGGACTCAGATAAGCTGCGATGCTTTAAAAGGGTTACGAAAATATTTGTAGAATAG TAATGTTCCAATTTTAAGCATAAGTCCAATTGTTTGGAGCAACTTCTCTATTTATGTTTCTAAGATTCAAGAGAAATGGG TAAATGGGGCAATTTCTGGTGAGTAAGAGCCTTTATTTGTTAATTACTCCCTCCGGTCCTATTTATAAGTAAAAAAAAAA ATTCACATAGTTTAAGAAATGTAGTAAAACTAGATAAAATGTATTAAATTTGTCTTGAATCAAAATAAACTTCC
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0100800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGAGGATTGGGTAAGACAACCTTAGCCAAAGCCATCTACAATAAAATTCATGGTGAATTTGAAGGTACAAGTTTTAT TGAAAACATTAGAGAAGTTTGTGAAAATGATAGCAGATGGCAGATGCATTTACAAGAACAACTTCTTTCAGATGTTCTGG AAACACAAGTAAAGATACATAGTACTTCATTTGGGATAAGTATGATTCAGAAGAGACTTTCTGGAAGAAAGGCACTGGTT ATACTTGATGATGTGACCACGTTTGTGCAATTAAAAGCCCTATGTGCAAATCGTAAATGGTTAGGTGTTGGAAGTGTACT AATTGTTACAACCAGAGATGTACGACTACTTAATTTACTTAAAGTTGACCGTGTCTGTAGAATGAAGGAAATGGACCAAA ATGACTCCCTTGAGCTTTTCAGTTGGCATGCTTTCAGACAAGCAAGTCCAAGAAAAGACTTCATTGAACTCTCAAGAAAC GTAGTTGCTTACTGTGGAGGATTACCACTAGCTCTTGAAGTCCTTGGATCTTACTTACATGAGAGGAAGAAAAAAGAATG GAGAAGTGTATTGTCAAAACTGAAGATGATTCCCAATGATCAAGTCCAAGAGAAACTCAGAATAAGTTATGACGGTTTAA AGGATGAGCTGCAAAAGGATATATTTCTTGACATATGCTGTTTCTTTATTGGCAAAGGTAGAGCGTATGTTACAGAGATA TTAAATGGCTGTGGACTTTATGCTGATATTGGAATAACTGTCCTCATAGAGAGGAGCCTCATAAAAGTTGAAAGGAATAA CAAGCTTGGGATACATGATCTGGTTCGAGACATGGGAAGAAAAATTGTTCGTGAAAGTTCAACAAAAGAGTCTGGGAAGC GTACTCGATTGTGGTCTCCTGAGGATGTACATGATGTTTTGACAAATAATACTGGAACAAAAACTGTTGAGGGGTTGGTT TTGAATTTGCCAAGAACTGGTAGGATTTCCTTCAATGTTAATGCTTTCAAGGAGATGAAGAAATTGAGACTTTTGCAACT TGTTAGTGTTGAACTCACAGGAGATTATAAGCACCTTTCCAAAGAATTGAAATGGGTCTATTGGAGAGAATGTGCTTTCA AATATATACCGGGTGACTTTTATCAGGGTAATCTAGTTGTTATGGAACTAAAACACAGCAATATTATACACGTCTGGAAG GAAGACAAGTTATTGAAGAAGCTAAAAATTCTCAATCTTAGTCATTCTAGGTACTTGAAAAAAACACCTGACTTTTCAAA ATTACCGAATCTAGAAAAGCTCATTATGAAAGATTGTCCAAGTTTGAGAGAGGTACACCAGTCCATTGGGGATCTGAGTA AGATTCTTCTAATAAATTTGAAGGACTGTACAAGCCTTAGCAATCTCCCAAGGAAGATCTATAAGTTGAAATCTTTGAAA ACTCTTATCATTTCCGGCTGTTCAAAGATTGACAAGTTGGAAGAAGATATAGAGCAGATGGAATCCTTGACAACTCTGAT AGCAAACGGCACAGCTGTAAAAGAAGTGCCCTATTCAGTAGTAAGATTGAAAAGCATGGGATATATATCGCTATGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0100800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGGLGKTTLAKAIYNKIHGEFEGTSFIENIREVCENDSRWQMHLQEQLLSDVLETQVKIHSTSFGISMIQKRLSGRKALV ILDDVTTFVQLKALCANRKWLGVGSVLIVTTRDVRLLNLLKVDRVCRMKEMDQNDSLELFSWHAFRQASPRKDFIELSRN VVAYCGGLPLALEVLGSYLHERKKKEWRSVLSKLKMIPNDQVQEKLRISYDGLKDELQKDIFLDICCFFIGKGRAYVTEI LNGCGLYADIGITVLIERSLIKVERNNKLGIHDLVRDMGRKIVRESSTKESGKRTRLWSPEDVHDVLTNNTGTKTVEGLV LNLPRTGRISFNVNAFKEMKKLRLLQLVSVELTGDYKHLSKELKWVYWRECAFKYIPGDFYQGNLVVMELKHSNIIHVWK EDKLLKKLKILNLSHSRYLKKTPDFSKLPNLEKLIMKDCPSLREVHQSIGDLSKILLINLKDCTSLSNLPRKIYKLKSLK TLIISGCSKIDKLEEDIEQMESLTTLIANGTAVKEVPYSVVRLKSMGYISL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.40.50.300
1 124 124 1.2E-18 –
SUPERFAMILY
SSF52540
1 225 225 3.25E-52
IPR027417
Pfam
PF00931
1 202 202 3.3E-27
IPR002182
PANTHER
PTHR11017:SF301
1 522 522 1.6E-292 –
PANTHER
PTHR11017
1 522 522 1.6E-292 –
PRINTS
PR00364
72 86 15 4.0E-14 –
Gene3D
G3DSA:1.10.8.430
130 221 92 3.4E-8 –
PRINTS
PR00364
165 179 15 4.0E-14 –
SUPERFAMILY
SSF46785
201 307 107 1.99E-12
IPR036390
Gene3D
G3DSA:3.80.10.10
308 531 224 1.5E-24
IPR032675
SUPERFAMILY
SSF52058
319 530 212 2.86E-27 –
PRINTS
PR00364
474 490 17 4.0E-14 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0043531
Molecular function ADP binding Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0100800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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