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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0101100 |
| Transcript ID | LotjaGi3g1v0101100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT3G57430.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430, chloroplastic; TrEMBL-Plants: tr|A0A072USN4|A0A072USN4_MEDTR Pentatricopeptide (PPR) repeat protein; Found in the gene: LotjaGi3g1v0101100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:12536042..12540456) extracted from Lotus japonicus Gifu genome v1.2.
ATAAAGGTATGTTCACACCTCTCCACCTTCACTTATGAAGAGAATCAAAGAGATATGTAAAGAAAAAAGAGAATTAAAGA TGCATGATTAGTGATGATGTAATAGGAAAAGAAGTGAGAGATGTGCTCGAGCATGCGAAGGAGATGAATCTTCCTCCGGA GACTCTAGTGTTGTAGCAAATTTTAGAATTATTGTCTCGAAGTTGGGGGATGAACGTAGTTTAGATTCCTCGTGGTGGAA ATGGTGTAGTGAATTGGTTGCTAGGAAAGGAGCTTATAGTCCACCGACAACCATCAGGGTGGTTGATAGACCTGATGCAG AGTTGGAAACAATTCTGTTGAAAGGCTCATTATCAGTTCTTTAATGTGTTCGTTTCTTGTTAGTTTTCTCAAGGGAAAAA AAAACTTCAGTCCTAAAAATTATTTTTTTACTGTTCTAAATTATGTTCAATAACATAAAAAAAATGCATTAGTTAGAGGC AATATTTTGCATCCGTTGAACGTTGAAACAATACAACTACATGCGTGACTGTAATGTCACGGATATTGTTATCATCACTG CTTCGGAGCTGCGCCACCCATTGCGCCGCCGCACAATGCCACGCCCAAAGCGTGCTCCAAGCTCTACTCCCCAATGTCAC TCTCGAAACCGACCTCTTACTAGCCTACTCCAGGTTGGGCCTTCTGGGCCACGCTCGCAAACTGTTCGACAAAATGCCTG AAAGAAACATGCACTCCTGGAACATCATGATCGCTTCCTACGCCCAAAGTTCCATGTATTCTGATGCATTAACGGTTTTT CGCGCGTTCAGGCGCTGTGGCCTGAGACCCGACCATTACACATTGCCGCCGTTGTTCAAAGCTTCTTTGGGAGCTGGTGA AGATTGTGTGGGAACCGTGTGTCATTGTTTGGTGATCAAGCTCGGGTACGAGAGATACGTTGTTGTAACTAACTCTGTGC TGGAGTTTTACCTCAAATGTGGGACCATGTCTCAGGCTTTGTGCCTGTTTCCCAAAGATAATGCTGAAAGGTATGAAAAA GTAATTTATAAAGAAAATGATTCGTAGACATTCGCATAGTGCAGACATTCCGTAGAAGCTCAGAGTGAGAAATGAAGTGA AAAGAAAGAAGTAATTGATGTGATATATGTAAGAAGAGAGAGATAGAGAGAAAAATGATGTGTATGTTAGGTGTTTGTTT GTATGTTCAAGTATCATTTCTGAATTTATAATATTTGCACAAACATTAGTTCTTACTGAACCACTAATTTCATTTCAAGT GTTTATAAGGGTCAAATTATCCCTGTATTAAAGAAGTCCTTATTTGATATTTAAGAATAAAGGTGTAGGGCTTGCATGAC AGATGTGAGTATAGTTTGTGGGTTTGTTAACTAATATATTAAGTTTAGGGGACTAGTTTGACGATCTTTGTAAATGTTGC GGAGGAATTTGTTGATTCACTGTTTGGTTGTATCTCTAGTTTCGCTTCTTATGGTTTCTTACAAAATAGTATGGCTTGTT TTCAAATATGTTTTATAGGGATTCAGTGACATGGAATTTGATGATCTCGGGGTTTGGAAGGGCAGGTTTGTATGCAGATG CTGTGCATTGTTTCAGAGAAATGTTGCAGCATCAGAATCGGATGAAGGTGGATTATATGACACTTCCTAGCATTTTGAGT GCTTGTGGAAGGGAAGGGGATTTGTTGAAAGTAAAGGAAGTGCATGGCTTTGTTGTGAGGAGCTTTGGTTTTGATGCTGA TGCTCCCACTGGGAATGCGTTGATTGATAGTTATGGCAAGTGTGGATGTTTGAATTATGTGGAGAAGGTTTTCAGGACCA TGGGACAAGTGAATTTGGTGACGTGGACAACTATGATATCTTGTTATGGAATGCATGGAAAGGGAGATGAATCAGTTTTG CTGTTTGAGAAGATGGTGGATGAAGGGTTTAGACCGAATGCTGTTACAATAACGGCAATCTTAGCCAGTTGTAGCCACTC TGGTCTGATAGATCAAGGCAAGAAGATTTTCAGCTCTATGAATTCAGATTATGGATTTGAGCCCACTGCTGAGCATTATG CTTGTATGGTGGATCTTTTTGGCCGCTGTGGGTGTCTTGAGGAAGCTCTTCGGTTGTTGGAAAGAATGAAGTCATCATCA GTGACAGGAAGCATGTGGGGCGCCCTTCTTGCTGGCTGTGTGATGCACAAAAATGTTGAAATTGGAGAAGTTGCGGCTCG TCATCTTTTTCAGTTAGAACCGAATAATCCTAGCAACTATGTTGCTTTGTGTGGTATCTATCAATCTCGTGGTATGGTTG ATGGCTTTTCATCTGTTAGATCAAAGATGAGGGGTTTAGGCTTAATTAAAACTCCTGGTTGTAGCTGGATCAATATTGCA GGAAGGGCTCATAAATTCTACCAAGGAGATCTTTCGCATCCACTTGCTCATATGATTTTCAAGATAATATATGAAATTAG CAACATTCAGTTAATGACTAATGGTTTGGGACTAGGAAATCTGCTACATGATGATGATACCATGTTCGTGGGTTTGTAGA GCATTTTATCCAGTTCATCTGATTAGAGCCAGGCAGGGATCGCCATTAAAGTAATGTGTTTGCTAAATGTTAAAGTTATT ATTCTTTTTCATTACAGGCATAATGTCTCAAATCATCTATTGTGGTGTAAGCTAACTGTTATTTTTTTAAGTTTTTGATT CTTTTTAGTTATGCTCCTGAAGATTTGCTGCCCAAACTATTTTTTCCTACAATTCTATTTCGTTTTTGCTTTTTTTCTAA AATAAATTAATATAGTATTAAAATCTTAAAGTTCCTGTTGTTTTAAACCAGGGTGTCAAGACTTGAGGCTCTTTCATCTC GAAGCTTATAAATGATTTCACCTGAAATTGTTATCATTTAATTTCAGTGCATGCCATTACATAGGTCAGTCATCCGTTAT GCCTTGATCATCATTTTTTATGGCTTTTCTTTTCCACCTCCTATTTCGAATTGTTTTTTTCACTTGATTTCTTGGTTTAG TTTTACTCAAATGACATTTGCAACTTCTCTGGTTTACGGATGCTTATTCTTTCCACTATTTTTAATCTTCACTCCTTTCA TTCATTCCTATTAGTTTACCATAAGAACTACATCTTTGAATTTCTTCCCTTGAGCTATAGTAGATCTTATATACTTCTGG TAATTTCTTTCGTAGATAGCCTATTAATTTCAGTTAACAATTCCAGTTCATGAGAAAAGCATATTACAGAATTCCAATCT TTATTGCTTTGATTTTCCAGAAACTACACTTTGCAAGCTGGTATGTTTGTGTTATCATGTGGTTTTGCATTTTCATGATG ATTAAGATCTGTTTCCACTATGTCAATTGCAAATTCTACACACAATTTGTAAACTAGTGATTTGCATTACATTGCTTATT CCTTTCTGCAAGCTTGATCTTTCAAACTCTTGTTATTTGTATCTTTTCAGAAGTGCTCGAAAATTGTAGATGTTGGAAGG TGAAGATGACCGTTTTAAATTGTCTGTTTATAATAAGGATTTCCTCATAATACAACTGACTTCGTAGCAGTACTGAAACT TCTCTCTTTCCAAGTGTTTGGGACTTGAGTTTTTATTGAAGAATTTTTATGGCAAGTTGGATCCTAATTCCACTGATGAT CATCTGAGGAAAAATTTTACTGTATGGAGAATAGGTTAGTGTGAAGATTCTAGCAGGCAACAATGTGGATTGTCCAATTT GCAAACAGGTAATATAACCTCCTCTTATACATTTGATATTTAACTTGTGTGAAAACTGAAATTATTTTCTTGTATAGGAA CCACTCTCAATATTGTGCCTTGATTTTTCATGCATCAGGAGCTTGCACAGAAGAGGCATTGTAAATTTTAAATGGAATGC AGTTGGGAGGACAATTTTTTCCCGTCTTTCATGGGGCCGCAGTCCTTCAAACAAACACTTAATTTATATCTACTAATTGT TGTAATGTAACTCTGTACTGACTTGCCATTGTCTTTCCGATTCTCTTCCATGACTGCATGCTGTGTTTCTCAGGCTCTGA TAGATTCAAACCAGAGAATGGTGCTGGTGGATATTATGGATATCCTCAAGGTGTGAAAATTATGGGGTATGCAAGTAACC AACCACCATAGAAACAGCAGCAAATATAATGTAGCTGAATCTCACTGCTCATATTTCTGTTCTTTTGTAATCGTATGAAC ATTGAAATTGAAATTTCATGGGAAACACCTTTTGTATACATAAAATATAACTTGCTGAATACTTATTTGATATTATAAGA GGATATAAAAAAATAGTTAGTTAGCTTGTTATAGGGTGGTTACAACTTACAATTCTGTGACTTAGCTAGCTTTCTTAATC AATTTTCCTTATGGC
CDS sequence (LotjaGi3g1v0101100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCACGGATATTGTTATCATCACTGCTTCGGAGCTGCGCCACCCATTGCGCCGCCGCACAATGCCACGCCCAAAGCGT GCTCCAAGCTCTACTCCCCAATGTCACTCTCGAAACCGACCTCTTACTAGCCTACTCCAGGTTGGGCCTTCTGGGCCACG CTCGCAAACTGTTCGACAAAATGCCTGAAAGAAACATGCACTCCTGGAACATCATGATCGCTTCCTACGCCCAAAGTTCC ATGTATTCTGATGCATTAACGGTTTTTCGCGCGTTCAGGCGCTGTGGCCTGAGACCCGACCATTACACATTGCCGCCGTT GTTCAAAGCTTCTTTGGGAGCTGGTGAAGATTGTGTGGGAACCGTGTGTCATTGTTTGGTGATCAAGCTCGGGTACGAGA GATACGTTGTTGTAACTAACTCTGTGCTGGAGTTTTACCTCAAATGTGGGACCATGTCTCAGGCTTTGTGCCTGTTTCCC AAAGATAATGCTGAAAGGGATTCAGTGACATGGAATTTGATGATCTCGGGGTTTGGAAGGGCAGGTTTGTATGCAGATGC TGTGCATTGTTTCAGAGAAATGTTGCAGCATCAGAATCGGATGAAGGTGGATTATATGACACTTCCTAGCATTTTGAGTG CTTGTGGAAGGGAAGGGGATTTGTTGAAAGTAAAGGAAGTGCATGGCTTTGTTGTGAGGAGCTTTGGTTTTGATGCTGAT GCTCCCACTGGGAATGCGTTGATTGATAGTTATGGCAAGTGTGGATGTTTGAATTATGTGGAGAAGGTTTTCAGGACCAT GGGACAAGTGAATTTGGTGACGTGGACAACTATGATATCTTGTTATGGAATGCATGGAAAGGGAGATGAATCAGTTTTGC TGTTTGAGAAGATGGTGGATGAAGGGTTTAGACCGAATGCTGTTACAATAACGGCAATCTTAGCCAGTTGTAGCCACTCT GGTCTGATAGATCAAGGCAAGAAGATTTTCAGCTCTATGAATTCAGATTATGGATTTGAGCCCACTGCTGAGCATTATGC TTGTATGGTGGATCTTTTTGGCCGCTGTGGGTGTCTTGAGGAAGCTCTTCGGTTGTTGGAAAGAATGAAGTCATCATCAG TGACAGGAAGCATGTGGGGCGCCCTTCTTGCTGGCTGTGTGATGCACAAAAATGTTGAAATTGGAGAAGTTGCGGCTCGT CATCTTTTTCAGTTAGAACCGAATAATCCTAGCAACTATGTTGCTTTGTGTGGTATCTATCAATCTCGTGGTATGGTTGA TGGCTTTTCATCTGTTAGATCAAAGATGAGGGGTTTAGGCTTAATTAAAACTCCTGGTTGTAGCTGGATCAATATTGCAG GAAGGGCTCATAAATTCTACCAAGGAGATCTTTCGCATCCACTTGCTCATATGATTTTCAAGATAATATATGAAATTAGC AACATTCAGTTAATGACTAATGGTTTGGGACTAGGAAATCTGCTACATGATGATGATACCATGTTCGTGGGTTTGTAG
Protein sequence (LotjaGi3g1v0101100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSRILLSSLLRSCATHCAAAQCHAQSVLQALLPNVTLETDLLLAYSRLGLLGHARKLFDKMPERNMHSWNIMIASYAQSS MYSDALTVFRAFRRCGLRPDHYTLPPLFKASLGAGEDCVGTVCHCLVIKLGYERYVVVTNSVLEFYLKCGTMSQALCLFP KDNAERDSVTWNLMISGFGRAGLYADAVHCFREMLQHQNRMKVDYMTLPSILSACGREGDLLKVKEVHGFVVRSFGFDAD APTGNALIDSYGKCGCLNYVEKVFRTMGQVNLVTWTTMISCYGMHGKGDESVLLFEKMVDEGFRPNAVTITAILASCSHS GLIDQGKKIFSSMNSDYGFEPTAEHYACMVDLFGRCGCLEEALRLLERMKSSSVTGSMWGALLAGCVMHKNVEIGEVAAR HLFQLEPNNPSNYVALCGIYQSRGMVDGFSSVRSKMRGLGLIKTPGCSWINIAGRAHKFYQGDLSHPLAHMIFKIIYEIS NIQLMTNGLGLGNLLHDDDTMFVGL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 3 | 3 | - | – | |
| Gene3D | 1 | 122 | 122 | 3.0E-17 | ||
| SignalP_EUK | 1 | 19 | 19 | - | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 20 | 20 | - | – | |
| Phobius | 4 | 15 | 12 | - | – | |
| PANTHER | 6 | 110 | 105 | 5.4E-87 | – | |
| Phobius | 16 | 24 | 9 | - | – | |
| Phobius | 25 | 505 | 481 | - | – | |
| ProSiteProfiles | 34 | 64 | 31 | 7.169 | ||
| Pfam | 41 | 65 | 25 | 0.014 | ||
| ProSiteProfiles | 65 | 99 | 35 | 10.95 | ||
| TIGRFAM | 67 | 100 | 34 | 1.2E-6 | ||
| Pfam | 68 | 97 | 30 | 1.8E-4 | ||
| PANTHER | 121 | 220 | 100 | 5.4E-87 | – | |
| Gene3D | 123 | 232 | 110 | 2.0E-15 | ||
| ProSiteProfiles | 167 | 201 | 35 | 10.95 | ||
| Pfam | 169 | 196 | 28 | 5.9E-7 | ||
| TIGRFAM | 169 | 196 | 28 | 1.7E-6 | ||
| ProSiteProfiles | 204 | 239 | 36 | 6.193 | ||
| PANTHER | 207 | 436 | 230 | 5.4E-87 | – | |
| Gene3D | 233 | 336 | 104 | 1.5E-24 | ||
| ProSiteProfiles | 240 | 270 | 31 | 7.245 | ||
| Pfam | 245 | 268 | 24 | 0.017 | ||
| Pfam | 271 | 317 | 47 | 1.4E-9 | ||
| ProSiteProfiles | 271 | 305 | 35 | 12.463 | ||
| TIGRFAM | 273 | 307 | 35 | 4.3E-9 | ||
| ProSiteProfiles | 306 | 341 | 36 | 7.826 | ||
| TIGRFAM | 308 | 342 | 35 | 0.0027 | ||
| Gene3D | 337 | 448 | 112 | 2.8E-11 | ||
| ProSiteProfiles | 342 | 376 | 35 | 9.558 | ||
| TIGRFAM | 346 | 374 | 29 | 7.1E-5 | ||
| Pfam | 346 | 373 | 28 | 6.4E-5 | ||
| ProSiteProfiles | 409 | 443 | 35 | 5.7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0101100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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