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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0112900 |
| Transcript ID | LotjaGi3g1v0112900.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Integrator complex subunit-like protein; TAIR: AT3G07530.2 integrator complex subunit; Swiss-Prot: sp|A7SBF0|INT9_NEMVE Integrator complex subunit 9 homolog; TrEMBL-Plants: tr|A0A1J7GXA9|A0A1J7GXA9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0112900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:13902517..13908961) extracted from Lotus japonicus Gifu genome v1.2.
GAAACAGGGAGGTGATAAGTTGCAGCCTAGGCGGATTTACCACCCGGCATACCTGGGCACGTGCCCAGGCTCCATGACCA AAAAACATTTTTTTGTTTGGGCCGTAGGGGCCTGTTTTGGAAAAAAAAAAACTCTCATTCTTGTTCTCTTTCTCTATCGT TCACCGAAGACGTGGGGGCCTGGCCGGGAGAAGGGCTTGTTGATGGAGAAAATTGATGGGTTTGTGGTGGTTAGGGATCC ACTGCGCCGTCATGGTGTGCATGAGGTTTGTGAGCTTGAAGGTGGTTCTGCACTTCTGGAACATGATTTCCACTTCGTTT GCTTCTGGTTTCACCAACCTTTCCATGGTGGTTTGGTACTGAACTAGAGAAACAGAGAAAGGTTCTTTGCTTTGTGTTCT TACTTGTTATTCTTGCTCTTTCTGTTCTGACTTTGGATTTATCAAATCAATTTATTATGGATGAAAATAGTTGCTTGCTG GAAGGGTGCTGTTCTTTCTTTCCTTTGAATCATTTCCCTATTTTTTTTTATTGATGTTTACAATTTCTTTGTTAATTGAT TATGATTATTAGGGTGACAAGGTGCTAATTAATATATGGTTGTGTAGCATGCTAGTTTGTTGGGTTGTGACTTTGACAGG GAGAATGCTAACATTGACAATGAGGGAATGGAGAAGGATGTGAATTAGTCTCCAACTAATGTTAAGCATCCTTGCAAATT TCCTTTTTAAAATTTGTTAGGAGGTTAATCTGATTGCTACTGTCTACTGCTTGACATAAGTGCATAAGCTTGAAATGTAT CTCATTTTTCATGTTCTTGTGAATGTATCTTTGATGGTTAGCTTGTATTTCAAGTTTTTGCTTTTTTTCAAAGTCCCTTT TGGCATCTAAACAAACTTGGTTCTTGTTGAAAGAATTTAATCTGATCAAATAATTATGCTCATTTATATATTTGGAGTTG ATTTCACATTAAAGGAATTAAAGCCATTGAGAGTGAATCAGAGATATAGCTTCAGGGATCAACAGTATAATGGTTAATCC TTCATTACACTTCTTAGTTTCTAATTCAAATATATATAATTTTCTTTCATCTGTTTGAGTTGTTCATACGTTAATTATGA ACTATTCCCATGTGGTTATGTGTTTCAATCAATAAAATCTCTGTTTTCATTGGTGTACAAACTTGCCCAGGCTCCACAAA ATTCTTGGCTCCGCCACTGGTTGCAGGTGGTGAACTGAAGGCAGCACTAAGAACCAGAGGGTGGAGCGAAGCAGACGGAA GAGGACGTTGCCTGCGGCGAGATGTTTGCCTGAGTGCTTTCTCCCTCTCCCTCTCCCTCTGCTTTCATTCTTGTTTCTCT TCTCATCCGCGTGTGGTGCTTCTCTTCCATAGCTACCAGCCACCTCTACCTGCTGCAGGAAGCTACAAGAGGCTATCCAT TTCATTCCCTATGAAGTTTGTGAGTTTCTCACTGCATTTCTTTTTGACTGTTTATGTATAGTTGCATATTAAGCAGTGTT GTCAAATCGCCATCGCGGACCATCGCAGTGAGCCAAAAGTCCGCTATTTCGGCCGCTATTTAGCGGGAATAGCGCGCTAT AGTGGGCAATAGCGGCGTCGCGATTAGCCAAAAATCCGCTATTTGATAACACTGATATTAAGGAATTTTTTATATTCCTT ATGAAAGTTTTATCCATGTTTTACATTTTTGTTACATTTCATGGGTTTTCAGACTTGTTTGAGTAAAGGGGATGGCTTTC ACTTTCCACCTTGTCACATGCTGGAATTTTGTGGGATTAGGATCTTATTGGATTGCCCACTAGATCTTTCTGCTCTCATA GCCTTCTCCCCTGTTCCTAATGCTTCGGATGTCTCGTCATTTGAAGAAAGCAACAACACTGAGGCCAATAGTTTTCTGAA TTCAGTGGCTCAGTCTCAAAAGAGACAGAAAATTGACAAGCCCCTTGATGGTAAAAGCTTGCTTTTCGCAGAACCTTGGT ACAAGACTGTTAATAATTTGCACCTATGGAATGCCTCTTTCATTGATGTTATATTAATCTCCAGTCCTATGGGCATTATG GGATTGCCCTTTCTTACTAGAACGAAGGGTTTCTCGGCTAAGGTAGTTTTTCTGTTGATGTTGTAAGATTTTTTAACCAT GTCGTATTTTGTTTTCTTTACTTAGTGCTTTGTTCGATTGGTTAGATCTATGTAACGGAAGCATCAGCCAGATTAGGCCA ACTTATGATGGAGGAACTTGTATCAATGCATGGTGAGTTTAGGCAGTTTTATGGACCGGGGGAATCTAATTTCCCTCCAT GGCTGAAGCAGGAAGAACTTGAAATGCTTCCTTCGATATTGAGAGAGATAATCTCGGGAAAAGATGGAGGAGAGCTGGGT GGTTGGATGCCCTTGTACAGGTGATCTACCCTTGATGTAGTTTATTTGCAAAGGACTAAATATTCTATATCCGAATCTAA AAGCAATATACTAGACTTTCACATGAACTGGTTGTGTTATTAATTTTTCTTATTGAATGATTATAATATTTTTCACATTT AAATGCTTTTAATTTGTTGTCGGAGGTTTGTCTATAATACAGTCAATATGACCCCCACCCGACATGGGTGCATTTATCTC CCATCCAGGATTCTTTCTGTTATTTTCCTTGGGTATTTTTTTGTATGCATGTCTTTTAGGGAAGCTATCCATGTTATATA GTTCTCACTAATGTGTTTAAGCTTTTGCATAGCAAATTTTGGTTCAGTTTGAAAAGTGTTGAATTTCCCAGTGCTGCAGA TGTGAAGGACTGTTTATTAAAGATTCACACACTTAAATATGCCGAGGAAGCCTGCTACAATGGTACGTTGGTTATAAAAG CATTCAGCTCTGGTGTAGAAATAGGCAGTTGTAATTGGATTATGAATGGTCCAAAGGGAGATATTGCTTATCTTTCAAGC TCCAGCTTTTTTTCTGCTCATGCAATGACATTCGATTACCGCAGTCTACAGGGGAGTTGTACATTAATTTATTCAGATTT CTCAGCCTTGAGTGATGTACAAGAGGTTGAGGCTGGGGATAGTTACTCTATTCGAACTGCTGATGCATTATTACCCCAGA GGTATGAGATTTTGATTTTATTCCCCTTTAGACTCAGAAGTTGTACCCATGGACAAGGACTTCAGTTATTGTTGTACACT TGTGCAAAATTTCAAGTTATCATTCTTTTTTTTTGAAAACACAACGTAATATTGATTAACCAGAAAGAAGTCCAAGAGAA CACCCCTCTCAAGATAAGTCTATAAGTCCAAAAACCCCCAAACACATCCCCCGTGTAGACCCAAACATTGCCAAGGGAAT AAGCCTCAAGTTATCATTCTTAAGGTTGTAGTGATGAAAATTTATATTTGTTAAAGATTGACTCCCGTATTGATTATTAC TGCAGTGTTCAAGATTTGGACGAGTTCAACCTTAACTCCGATGAGAATTCAGAGGAAAAGGAAAAACTGGTTTTCATATG CTCATGTGCTATAGAGTGTGTCAAAATTGGTGGTTCAGTTCTTGTTCCTGTCAACCGACTTGGAACTATCTTGCAGCTTT TGGAGGAAATTACAACCTCACTTGAAGCTTTGGCTATGAAGGTATGTTCTCAATTGAATGGTTATCAAAATCAAGAAAAA TATCATGAATATATATTATATTTGCGGGCATTATTAATTATCCGTGTTTGAATTGTTGTCTTTTGTCCTGTAAAACCCTA TTCTCTCACCCCTTTTTGTTGCATGTTCCTACTCATGGGTAAAAAATCTGTCTTTTGCATTCAGATTCTAGTTGCTTTTC TGATTCGCATTTTCTTCTTTTGATTGCTAAGAGACTTAGACTCATGTTATTGTTTACCAGTGTTCATTTTTAAAATTTCA TTGCTTTTCATTTTCATTATTGTGCATGTAATGGGAAAGATAGGAAGAGCCAAAGTTGCATCTTTGAATGTTTGTAAACT GAACTAGAAATCAATTGAGTTTTCTAGTCAAATAAACATAACTGGCAAATGGATTCTTGGAGGAAAGCCTGAGATGCGTG CTCACTGAATTTTAAGAATTCATAACTTTGCTATATGTAGGTTCCAGTTTATATAATTTCTTCCGTTGCTGAAGAATTGC TGGCATTGCTTAACGTCATACCAGAGTGGCTTTGCAAACAGCGGCAAGAAAGAGTACTGATCGAAATCTGTATTTGGTCC ATTGCACTTGAATACTTTAATTTGCAAAATTTGACTTGTGTTTACCCACTTTAATTGGTGCTGCAGCTATTTGCTGGGGA ACCATTATTTGCGCATGTCAAGCTCCTAAAAGAGAAAAAGATACACGTGGTTCCTGATGTTCTGTCACCTCAACTTTTGT GAGTGTTTTATCTATCATTGTCATTCCCCCCCCCCCCTTCTATTATAAGCTATAAAGAACTACTATTGACAATGGAGATG TTAATCGAATTTAGTGTTTCTTCACACTTTCTAGAGCCAAAGTCATGCGCTCTAGTTATGCTAATTATTTGGGGAAAATT TACACTTCCTAACAGTTTAAGTTTCTGTTAATAGCCTGAAAGTATGTCAAAGCTTTCAATTTTAACAAACTGCATAAACT ACAGATCGCTCTTCCTTGATTATTTTAATTATTATTTGGCTATTTGCTCATAAAAACTGATGTACTGCTTGTAGAATGAA TTGGCAAGAGCCATGCATTGTATTTTGTCCTCACTGGACTCTGCGTCTGGGTCCTGTTGTTCATCTGCTTCAACGTTGGA GAAGTGATCCTAAATCTTTACTTATTCTTGAGGTGTGATGTATTCCTCACATAATATAAGTACTTATGATGCTTCATTGA ATTATTTTTATTTTTTATTCTTTTTTAAGAAATATGTCTTGATATCTGTGGACTTGTAAGTTTTGTCCTTTTAATGAAGC TGGAATGGCTTTGACCATTGTTGTATTGAACTGTTGATATGACTCTTTGCAGGATACTGTGAATCCTGAGATGACACTCT TACCTTTCCAGCCAGTTGCAATGAAGGTTCTTCAATGTATGTCCCCCTCTGGAATAGGGTGGGTATATCTTTCTTTTTAC ACTCCCTATTTCTAAGCATCGTTGCTCAAGACCTAACATGTATTTTCAAAATGAACACTTTGACATTTGGTCACTAAAAT AGTGTAGTTTCTGCTGATGACAATTTGATTTATGTATTTAGCGTTCTCTCAATATTTTGATTGTAGGTTGCAGAAAGTTC AACCTTTGCTGAAGATATTGCAGCCAAAGACTGTTCTGGTAATTGGACAAAGATTACTTTATAGTTATACACTTCATATT GTTTTTAAAGATTATGTGATGAACTGATGATCTGTTTTCATTTAAACTTATCTTATTCTCTAGTTCCCTGAAGATTTGAG GTTGCACGTCAGATTTCCAAGTGAAAAGTCTTTCTCAGTTTTGTATTATACTGAAGCTGAGACTTTAAAAGTGTCATCTC AAAAAGACAATTCAGAGTTAAAAATTGCAGCTGATTTGGCTTCCCAGTTTTATTGGAAAAACTTCAAAAATGAAGGAATC AGTATCGCAAGATTAAAGGGGAAGCTATTAATGGAAAATGGTAGATATCACTTGCTGATGGATGATCATGATAGAAATTC CTCAAGAAATATGCCTTTGGTACATTGGAGTTTACCGGATTCAGAAAAGCTTCTGGCTGCATTATCCAAAGTTAGCATCA ATGTGGAAACTATAAGTACAAATCAAAGACAAGCTGCCAAGGAACATGGTATGGATGGTGCACAAACTCTGTGTACGGTT CACACACTGGAACCATACAAAGCCCTAATAGAGATCGGAACCGCCAGTACTAATATTACCACTGCTGATCCGAACGTGGC TTCTGTAATTTATAAAGCTATAGACAGCATTTTGAATGAGGTTTCTTAGCCCAAGTGAGCATTACCGATGCAGCCACGCT AGTAAATATAACTGTTTTTTTAAAGTCATTTTGGGTGCTAGGAGGTTTATACATCATATGGCCTGAGGATGTATTTGTCT GTTAACTTAACCTGTTTGTGGAAAAGGAGTAGAAAAGTAAATGTGCAAGCAATTTTTACATTTGAGTATTTGGAGTAGTT TATAGTAGAGGTAGGTTTTGGCCTAACCAAATCATTTCCCACATCTTTAGAGATTAAAACATTCAACTGTCCAATAAAAA TATTGAATTTCCACCTATTTTAATATATGTTATTTAATAAACCAACCTTATTATAAAAGGTTAAAGTCTAACATTAAGTG TCCCTAGATGATAACTCAAGTGGTAGGAGTTGGGGACATATGCGTTGGGAAGGGCAGGTACAGGGATCAATTTTTGGAGG GTGCAATTTATCTTTCTGATGTACTAAAAAAAGTCTTTTTGTCAT
CDS sequence (LotjaGi3g1v0112900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGTTATGTGTTTCAATCAATAAAATCTCTGTTTTCATTGGTGTACAAACTTGCCCAGGCTCCACAAAATTCTTGGC TCCGCCACTGGTTGCAGGTGGTGAACTGAAGGCAGCACTAAGAACCAGAGGGTGGAGCGAAGCAGACGGAAGAGGACGTT GCCTGCGGCGAGATGTTTGCCTGAGTGCTTTCTCCCTCTCCCTCTCCCTCTGCTTTCATTCTTGTTTCTCTTCTCATCCG CGTGTGGTGCTTCTCTTCCATAGCTACCAGCCACCTCTACCTGCTGCAGGAAGCTACAAGAGGCTATCCATTTCATTCCC TATGAAGTTTACTTGTTTGAGTAAAGGGGATGGCTTTCACTTTCCACCTTGTCACATGCTGGAATTTTGTGGGATTAGGA TCTTATTGGATTGCCCACTAGATCTTTCTGCTCTCATAGCCTTCTCCCCTGTTCCTAATGCTTCGGATGTCTCGTCATTT GAAGAAAGCAACAACACTGAGGCCAATAGTTTTCTGAATTCAGTGGCTCAGTCTCAAAAGAGACAGAAAATTGACAAGCC CCTTGATGGTAAAAGCTTGCTTTTCGCAGAACCTTGGTACAAGACTGTTAATAATTTGCACCTATGGAATGCCTCTTTCA TTGATGTTATATTAATCTCCAGTCCTATGGGCATTATGGGATTGCCCTTTCTTACTAGAACGAAGGGTTTCTCGGCTAAG ATCTATGTAACGGAAGCATCAGCCAGATTAGGCCAACTTATGATGGAGGAACTTGTATCAATGCATGGTGAGTTTAGGCA GTTTTATGGACCGGGGGAATCTAATTTCCCTCCATGGCTGAAGCAGGAAGAACTTGAAATGCTTCCTTCGATATTGAGAG AGATAATCTCGGGAAAAGATGGAGGAGAGCTGGGTGGTTGGATGCCCTTGTACAGTGCTGCAGATGTGAAGGACTGTTTA TTAAAGATTCACACACTTAAATATGCCGAGGAAGCCTGCTACAATGGTACGTTGGTTATAAAAGCATTCAGCTCTGGTGT AGAAATAGGCAGTTGTAATTGGATTATGAATGGTCCAAAGGGAGATATTGCTTATCTTTCAAGCTCCAGCTTTTTTTCTG CTCATGCAATGACATTCGATTACCGCAGTCTACAGGGGAGTTGTACATTAATTTATTCAGATTTCTCAGCCTTGAGTGAT GTACAAGAGGTTGAGGCTGGGGATAGTTACTCTATTCGAACTGCTGATGCATTATTACCCCAGAGTGTTCAAGATTTGGA CGAGTTCAACCTTAACTCCGATGAGAATTCAGAGGAAAAGGAAAAACTGGTTTTCATATGCTCATGTGCTATAGAGTGTG TCAAAATTGGTGGTTCAGTTCTTGTTCCTGTCAACCGACTTGGAACTATCTTGCAGCTTTTGGAGGAAATTACAACCTCA CTTGAAGCTTTGGCTATGAAGGTTCCAGTTTATATAATTTCTTCCGTTGCTGAAGAATTGCTGGCATTGCTTAACGTCAT ACCAGAGTGGCTTTGCAAACAGCGGCAAGAAAGACTATTTGCTGGGGAACCATTATTTGCGCATGTCAAGCTCCTAAAAG AGAAAAAGATACACGTGGTTCCTGATGTTCTGTCACCTCAACTTTTAATGAATTGGCAAGAGCCATGCATTGTATTTTGT CCTCACTGGACTCTGCGTCTGGGTCCTGTTGTTCATCTGCTTCAACGTTGGAGAAGTGATCCTAAATCTTTACTTATTCT TGAGGATACTGTGAATCCTGAGATGACACTCTTACCTTTCCAGCCAGTTGCAATGAAGGTTCTTCAATGTATGTCCCCCT CTGGAATAGGGTTGCAGAAAGTTCAACCTTTGCTGAAGATATTGCAGCCAAAGACTGTTCTGTTCCCTGAAGATTTGAGG TTGCACGTCAGATTTCCAAGTGAAAAGTCTTTCTCAGTTTTGTATTATACTGAAGCTGAGACTTTAAAAGTGTCATCTCA AAAAGACAATTCAGAGTTAAAAATTGCAGCTGATTTGGCTTCCCAGTTTTATTGGAAAAACTTCAAAAATGAAGGAATCA GTATCGCAAGATTAAAGGGGAAGCTATTAATGGAAAATGGTAGATATCACTTGCTGATGGATGATCATGATAGAAATTCC TCAAGAAATATGCCTTTGGTACATTGGAGTTTACCGGATTCAGAAAAGCTTCTGGCTGCATTATCCAAAGTTAGCATCAA TGTGGAAACTATAAGTACAAATCAAAGACAAGCTGCCAAGGAACATGGTATGGATGGTGCACAAACTCTGTGTACGGTTC ACACACTGGAACCATACAAAGCCCTAATAGAGATCGGAACCGCCAGTACTAATATTACCACTGCTGATCCGAACGTGGCT TCTGTAATTTATAAAGCTATAGACAGCATTTTGAATGAGGTTTCTTAG
Protein sequence (LotjaGi3g1v0112900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWLCVSINKISVFIGVQTCPGSTKFLAPPLVAGGELKAALRTRGWSEADGRGRCLRRDVCLSAFSLSLSLCFHSCFSSHP RVVLLFHSYQPPLPAAGSYKRLSISFPMKFTCLSKGDGFHFPPCHMLEFCGIRILLDCPLDLSALIAFSPVPNASDVSSF EESNNTEANSFLNSVAQSQKRQKIDKPLDGKSLLFAEPWYKTVNNLHLWNASFIDVILISSPMGIMGLPFLTRTKGFSAK IYVTEASARLGQLMMEELVSMHGEFRQFYGPGESNFPPWLKQEELEMLPSILREIISGKDGGELGGWMPLYSAADVKDCL LKIHTLKYAEEACYNGTLVIKAFSSGVEIGSCNWIMNGPKGDIAYLSSSSFFSAHAMTFDYRSLQGSCTLIYSDFSALSD VQEVEAGDSYSIRTADALLPQSVQDLDEFNLNSDENSEEKEKLVFICSCAIECVKIGGSVLVPVNRLGTILQLLEEITTS LEALAMKVPVYIISSVAEELLALLNVIPEWLCKQRQERLFAGEPLFAHVKLLKEKKIHVVPDVLSPQLLMNWQEPCIVFC PHWTLRLGPVVHLLQRWRSDPKSLLILEDTVNPEMTLLPFQPVAMKVLQCMSPSGIGLQKVQPLLKILQPKTVLFPEDLR LHVRFPSEKSFSVLYYTEAETLKVSSQKDNSELKIAADLASQFYWKNFKNEGISIARLKGKLLMENGRYHLLMDDHDRNS SRNMPLVHWSLPDSEKLLAALSKVSINVETISTNQRQAAKEHGMDGAQTLCTVHTLEPYKALIEIGTASTNITTADPNVA SVIYKAIDSILNEVS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 108 | 813 | 706 | 7.8E-230 | ||
| SUPERFAMILY | 108 | 679 | 572 | 1.91E-79 | ||
| Gene3D | 440 | 596 | 157 | 2.7E-30 | – | |
| SMART | 470 | 595 | 126 | 1.1E-8 | ||
| Pfam | 470 | 587 | 118 | 2.7E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | SnRNA processing | Any process involved in the conversion of a primary small nuclear RNA (snRNA) transcript into a mature snRNA molecule. | ||
| Cellular component | Integrator complex | A protein complex that stably associates with the C-terminus of RNA polymerase II and mediates 3'-end processing of small nuclear RNAs generated by RNA polymerase II. |
Expression pattern of LotjaGi3g1v0112900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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