Domain Predictions — View

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G3DSA:3.40.50.10890

Source: Gene3D

Description

No description is available for this domain.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 16

Transcript	Name	Description	Predicted domains	Domain count
LotjaGi1g1v0255900.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cleavage and polyadenylation specificity factor subunit 3; TAIR: AT2G01730.1 cleavage and polyadenylation specificity factor 73 kDa subunit-II; Swiss-Prot: sp\|Q8GUU3\|CPS3B_ARATH Cleavage and polyadenylation specificity factor subunit 3-II; TrEMBL-Plants: tr\|A0A072VR63\|A0A072VR63_MEDTR Cleavage and polyadenylation specificity factor, putative; Found in the gene: LotjaGi1g1v0255900	Domains G3DSA:3.40.50.10890 G3DSA:3.60.15.10 IPR001279 IPR011108 IPR022712 IPR036866 IPR041897 PF07521 PF10996 PF16661 PTHR11203 PTHR11203:SF37 SM00849 SM01027 SSF56281 cd16291	16
LotjaGi1g1v0255900.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cleavage and polyadenylation specificity factor subunit 3; TAIR: AT2G01730.1 cleavage and polyadenylation specificity factor 73 kDa subunit-II; Swiss-Prot: sp\|Q8GUU3\|CPS3B_ARATH Cleavage and polyadenylation specificity factor subunit 3-II; TrEMBL-Plants: tr\|A0A072VR63\|A0A072VR63_MEDTR Cleavage and polyadenylation specificity factor, putative; Found in the gene: LotjaGi1g1v0255900	Domains G3DSA:3.40.50.10890 G3DSA:3.60.15.10 IPR001279 IPR011108 IPR022712 IPR036866 IPR041897 PF07521 PF10996 PF16661 PTHR11203 PTHR11203:SF37 SM00849 SM01027 SSF56281 cd16291	16
LotjaGi1g1v0255900.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cleavage and polyadenylation specificity factor subunit 3; TAIR: AT2G01730.1 cleavage and polyadenylation specificity factor 73 kDa subunit-II; Swiss-Prot: sp\|Q8GUU3\|CPS3B_ARATH Cleavage and polyadenylation specificity factor subunit 3-II; TrEMBL-Plants: tr\|A0A072VR63\|A0A072VR63_MEDTR Cleavage and polyadenylation specificity factor, putative; Found in the gene: LotjaGi1g1v0255900	Domains G3DSA:3.40.50.10890 G3DSA:3.60.15.10 IPR001279 IPR011108 IPR022712 IPR036866 IPR041897 PF07521 PF10996 PF16661 PTHR11203 PTHR11203:SF37 SM00849 SM01027 SSF56281 cd16291	16
LotjaGi1g1v0255900.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cleavage and polyadenylation specificity factor subunit 3; TAIR: AT2G01730.1 cleavage and polyadenylation specificity factor 73 kDa subunit-II; Swiss-Prot: sp\|Q8GUU3\|CPS3B_ARATH Cleavage and polyadenylation specificity factor subunit 3-II; TrEMBL-Plants: tr\|A0A072VR63\|A0A072VR63_MEDTR Cleavage and polyadenylation specificity factor, putative; Found in the gene: LotjaGi1g1v0255900	Domains G3DSA:3.40.50.10890 G3DSA:3.60.15.10 IPR001279 IPR011108 IPR022712 IPR036866 IPR041897 PF07521 PF10996 PF16661 PTHR11203 PTHR11203:SF37 SM00849 SM01027 SSF56281 cd16291	16
LotjaGi2g1v0072300.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cleavage and polyadenylation specificity factor subunit 3; TAIR: AT2G01730.1 cleavage and polyadenylation specificity factor 73 kDa subunit-II; Swiss-Prot: sp\|Q8GUU3\|CPS3B_ARATH Cleavage and polyadenylation specificity factor subunit 3-II; TrEMBL-Plants: tr\|V7C7J5\|V7C7J5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0072300	Domains G3DSA:3.40.50.10890 G3DSA:3.60.15.10 IPR001279 IPR011108 IPR022712 IPR036866 IPR041897 PF07521 PF10996 PF16661 PTHR11203 PTHR11203:SF37 SM00849 SM01027 SSF56281 cd16291	16
LotjaGi2g1v0072300.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cleavage and polyadenylation specificity factor subunit 3; TAIR: AT2G01730.1 cleavage and polyadenylation specificity factor 73 kDa subunit-II; Swiss-Prot: sp\|Q8GUU3\|CPS3B_ARATH Cleavage and polyadenylation specificity factor subunit 3-II; TrEMBL-Plants: tr\|V7C7J5\|V7C7J5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0072300	Domains G3DSA:3.40.50.10890 G3DSA:3.60.15.10 IPR001279 IPR011108 IPR022712 IPR036866 IPR041897 PF07521 PF10996 PF16661 PTHR11203 PTHR11203:SF37 SM00849 SM01027 SSF56281 cd16291	16
LotjaGi2g1v0141300.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cleavage and polyadenylation specificity factor subunit 2-like protein; TAIR: AT5G23880.1 cleavage and polyadenylation specificity factor 100; Swiss-Prot: sp\|Q9LKF9\|CPSF2_ARATH Cleavage and polyadenylation specificity factor subunit 2; TrEMBL-Plants: tr\|A0A0B0PTU3\|A0A0B0PTU3_GOSAR Cleavage and polyadenylation specificity factor subunit 2-like protein; Found in the gene: LotjaGi2g1v0141300	Domains Coil G3DSA:3.40.50.10890 G3DSA:3.60.15.10 IPR001279 IPR011108 IPR025069 IPR027075 IPR035639 IPR036866 PF07521 PF13299 PF16661 PTHR45922 SSF56281 cd16293	15
LotjaGi2g1v0141300.5 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cleavage and polyadenylation specificity factor subunit 2; TAIR: AT5G23880.1 cleavage and polyadenylation specificity factor 100; Swiss-Prot: sp\|Q9LKF9\|CPSF2_ARATH Cleavage and polyadenylation specificity factor subunit 2; TrEMBL-Plants: tr\|A0A1J7HZX4\|A0A1J7HZX4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0141300	Domains Coil G3DSA:3.40.50.10890 G3DSA:3.60.15.10 IPR001279 IPR011108 IPR022712 IPR025069 IPR027075 IPR036866 PF07521 PF10996 PF13299 PF16661 PTHR45922 SM01027 SSF56281	16
LotjaGi3g1v0112900.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Integrator complex subunit-like protein; TAIR: AT3G07530.2 integrator complex subunit; Swiss-Prot: sp\|A7SBF0\|INT9_NEMVE Integrator complex subunit 9 homolog; TrEMBL-Plants: tr\|A0A1J7GXA9\|A0A1J7GXA9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0112900	Domains G3DSA:3.40.50.10890 IPR022712 IPR027074 IPR036866 PF10996 PTHR46094 SM01027 SSF56281	8
LotjaGi3g1v0112900.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Integrator complex subunit-like protein; TAIR: AT3G07530.2 integrator complex subunit; Swiss-Prot: sp\|A7SBF0\|INT9_NEMVE Integrator complex subunit 9 homolog; TrEMBL-Plants: tr\|A0A1J7GXA9\|A0A1J7GXA9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0112900	Domains G3DSA:3.40.50.10890 IPR022712 IPR027074 IPR036866 PF10996 PTHR46094 SM01027 SSF56281	8
LotjaGi3g1v0112900.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Integrator complex subunit-like protein; TAIR: AT3G07530.2 integrator complex subunit; Swiss-Prot: sp\|A7SBF0\|INT9_NEMVE Integrator complex subunit 9 homolog; TrEMBL-Plants: tr\|A0A1J7GXA9\|A0A1J7GXA9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0112900	Domains Coil G3DSA:3.40.50.10890 IPR022712 IPR027074 IPR036866 PF10996 PTHR46094 SM01027 SSF56281	9
LotjaGi5g1v0053100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cleavage and polyadenylation specificity factor subunit 3; TAIR: AT2G01730.1 cleavage and polyadenylation specificity factor 73 kDa subunit-II; Swiss-Prot: sp\|Q8GUU3\|CPS3B_ARATH Cleavage and polyadenylation specificity factor subunit 3-II; TrEMBL-Plants: tr\|V7C7J5\|V7C7J5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0053100	Domains G3DSA:3.40.50.10890 G3DSA:3.60.15.10 IPR001279 IPR011108 IPR022712 IPR036866 IPR041897 PF07521 PF10996 PF16661 PTHR11203 PTHR11203:SF37 SM00849 SM01027 SSF56281 cd16291	16
LotjaGi5g1v0053100.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cleavage and polyadenylation specificity factor subunit 3; TAIR: AT2G01730.1 cleavage and polyadenylation specificity factor 73 kDa subunit-II; Swiss-Prot: sp\|Q8GUU3\|CPS3B_ARATH Cleavage and polyadenylation specificity factor subunit 3-II; TrEMBL-Plants: tr\|V7C7J5\|V7C7J5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0053100	Domains G3DSA:3.40.50.10890 G3DSA:3.60.15.10 IPR001279 IPR011108 IPR022712 IPR036866 IPR041897 PF07521 PF10996 PF16661 PTHR11203 PTHR11203:SF37 SM00849 SM01027 SSF56281 cd16291	16
LotjaGi5g1v0053100.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cleavage and polyadenylation specificity factor subunit 3; TAIR: AT2G01730.1 cleavage and polyadenylation specificity factor 73 kDa subunit-II; Swiss-Prot: sp\|Q8GUU3\|CPS3B_ARATH Cleavage and polyadenylation specificity factor subunit 3-II; TrEMBL-Plants: tr\|V7C7J5\|V7C7J5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0053100	Domains G3DSA:3.40.50.10890 G3DSA:3.60.15.10 IPR001279 IPR011108 IPR022712 IPR036866 IPR041897 PF07521 PF10996 PF16661 PTHR11203 PTHR11203:SF37 SM00849 SM01027 SSF56281 cd16291	16
LotjaGi6g1v0362400.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cleavage and polyadenylation specificity factor subunit 3; TAIR: AT1G61010.1 cleavage and polyadenylation specificity factor 73-I; Swiss-Prot: sp\|Q9C952\|CPSF3_ARATH Cleavage and polyadenylation specificity factor subunit 3-I; TrEMBL-Plants: tr\|K7LVE4\|K7LVE4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0362400	Domains Coil G3DSA:3.40.50.10890 G3DSA:3.60.15.10 IPR001279 IPR011108 IPR021718 IPR022712 IPR036866 PF00753 PF07521 PF10996 PF11718 PTHR11203 PTHR11203:SF48 SM00849 SM01027 SM01098 SSF56281 cd16292	19
LotjaGi6g1v0362400.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cleavage and polyadenylation specificity factor subunit 3; TAIR: AT1G61010.1 cleavage and polyadenylation specificity factor 73-I; Swiss-Prot: sp\|Q9C952\|CPSF3_ARATH Cleavage and polyadenylation specificity factor subunit 3-I; TrEMBL-Plants: tr\|K7LVE4\|K7LVE4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0362400	Domains CYTOPLASMIC_DOMAIN Coil G3DSA:3.40.50.10890 G3DSA:3.60.15.10 IPR001279 IPR011108 IPR021718 IPR022712 IPR036866 NON_CYTOPLASMIC_DOMAIN PF00753 PF07521 PF10996 PF11718 PTHR11203 PTHR11203:SF48 SM00849 SM01027 SM01098 SSF56281 TRANSMEMBRANE cd16292	22

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd16292	CDD	1	6.25