Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0112900 |
| Transcript ID | LotjaGi3g1v0112900.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Integrator complex subunit-like protein; TAIR: AT3G07530.2 integrator complex subunit; Swiss-Prot: sp|A7SBF0|INT9_NEMVE Integrator complex subunit 9 homolog; TrEMBL-Plants: tr|A0A1J7GXA9|A0A1J7GXA9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0112900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:13902637..13908956) extracted from Lotus japonicus Gifu genome v1.2.
AGGGAGGTGATAAGTTGCAGCCTAGGCGGATTTACCACCCGGCATACCTGGGCACGTGCCCAGGCTCCATGACCAAAAAA CATTTTTTTGTTTGGGCCGTAGGGGCCTGTTTTGGAAAAAAAAAAACTCTCATTCTTGTTCTCTTTCTCTATCGTTCACC GAAGACGTGGGGGCCTGGCCGGGAGAAGGGCTTGTTGATGGAGAAAATTGATGGGTTTGTGGTGGTTAGGGATCCACTGC GCCGTCATGGTGTGCATGAGGTTTGTGAGCTTGAAGGTGGTTCTGCACTTCTGGAACATGATTTCCACTTCGTTTGCTTC TGGTTTCACCAACCTTTCCATGGTGGTTTGGTACTGAACTAGAGAAACAGAGAAAGGTTCTTTGCTTTGTGTTCTTACTT GTTATTCTTGCTCTTTCTGTTCTGACTTTGGATTTATCAAATCAATTTATTATGGATGAAAATAGTTGCTTGCTGGAAGG GTGCTGTTCTTTCTTTCCTTTGAATCATTTCCCTATTTTTTTTTATTGATGTTTACAATTTCTTTGTTAATTGATTATGA TTATTAGGGTGACAAGGTGCTAATTAATATATGGTTGTGTAGCATGCTAGTTTGTTGGGTTGTGACTTTGACAGGGAGAA TGCTAACATTGACAATGAGGGAATGGAGAAGGATGTGAATTAGTCTCCAACTAATGTTAAGCATCCTTGCAAATTTCCTT TTTAAAATTTGTTAGGAGGTTAATCTGATTGCTACTGTCTACTGCTTGACATAAGTGCATAAGCTTGAAATGTATCTCAT TTTTCATGTTCTTGTGAATGTATCTTTGATGGTTAGCTTGTATTTCAAGTTTTTGCTTTTTTTCAAAGTCCCTTTTGGCA TCTAAACAAACTTGGTTCTTGTTGAAAGAATTTAATCTGATCAAATAATTATGCTCATTTATATATTTGGAGTTGATTTC ACATTAAAGGAATTAAAGCCATTGAGAGTGAATCAGAGATATAGCTTCAGGGATCAACAGTATAATGGTTAATCCTTCAT TACACTTCTTAGTTTCTAATTCAAATATATATAATTTTCTTTCATCTGTTTGAGTTGTTCATACGTTAATTATGAACTAT TCCCATGTGGTTATGTGTTTCAATCAATAAAATCTCTGTTTTCATTGGTGTACAAACTTGCCCAGGCTCCACAAAATTCT TGGCTCCGCCACTGGTTGCAGGTGGTGAACTGAAGGCAGCACTAAGAACCAGAGGGTGGAGCGAAGCAGACGGAAGAGGA CGTTGCCTGCGGCGAGATGTTTGCCTGAGTGCTTTCTCCCTCTCCCTCTCCCTCTGCTTTCATTCTTGTTTCTCTTCTCA TCCGCGTGTGGTGCTTCTCTTCCATAGCTACCAGCCACCTCTACCTGCTGCAGGAAGCTACAAGAGGCTATCCATTTCAT TCCCTATGAAGTTTGTGAGTTTCTCACTGCATTTCTTTTTGACTGTTTATGTATAGTTGCATATTAAGCAGTGTTGTCAA ATCGCCATCGCGGACCATCGCAGTGAGCCAAAAGTCCGCTATTTCGGCCGCTATTTAGCGGGAATAGCGCGCTATAGTGG GCAATAGCGGCGTCGCGATTAGCCAAAAATCCGCTATTTGATAACACTGATATTAAGGAATTTTTTATATTCCTTATGAA AGTTTTATCCATGTTTTACATTTTTGTTACATTTCATGGGTTTTCAGACTTGTTTGAGTAAAGGGGATGGCTTTCACTTT CCACCTTGTCACATGCTGGAATTTTGTGGGATTAGGATCTTATTGGATTGCCCACTAGATCTTTCTGCTCTCATAGCCTT CTCCCCTGTTCCTAATGCTTCGGATGTCTCGTCATTTGAAGAAAGCAACAACACTGAGGCCAATAGTTTTCTGAATTCAG TGGCTCAGTCTCAAAAGAGACAGAAAATTGACAAGCCCCTTGATGGTAAAAGCTTGCTTTTCGCAGAACCTTGGTACAAG ACTGTTAATAATTTGCACCTATGGAATGCCTCTTTCATTGATGTTATATTAATCTCCAGTCCTATGGGCATTATGGGATT GCCCTTTCTTACTAGAACGAAGGGTTTCTCGGCTAAGGTAGTTTTTCTGTTGATGTTGTAAGATTTTTTAACCATGTCGT ATTTTGTTTTCTTTACTTAGTGCTTTGTTCGATTGGTTAGATCTATGTAACGGAAGCATCAGCCAGATTAGGCCAACTTA TGATGGAGGAACTTGTATCAATGCATGGTGAGTTTAGGCAGTTTTATGGACCGGGGGAATCTAATTTCCCTCCATGGCTG AAGCAGGAAGAACTTGAAATGCTTCCTTCGATATTGAGAGAGATAATCTCGGGAAAAGATGGAGGAGAGCTGGGTGGTTG GATGCCCTTGTACAGGTGATCTACCCTTGATGTAGTTTATTTGCAAAGGACTAAATATTCTATATCCGAATCTAAAAGCA ATATACTAGACTTTCACATGAACTGGTTGTGTTATTAATTTTTCTTATTGAATGATTATAATATTTTTCACATTTAAATG CTTTTAATTTGTTGTCGGAGGTTTGTCTATAATACAGTCAATATGACCCCCACCCGACATGGGTGCATTTATCTCCCATC CAGGATTCTTTCTGTTATTTTCCTTGGGTATTTTTTTGTATGCATGTCTTTTAGGGAAGCTATCCATGTTATATAGTTCT CACTAATGTGTTTAAGCTTTTGCATAGCAAATTTTGGTTCAGTTTGAAAAGTGTTGAATTTCCCAGTGCTGCAGATGTGA AGGACTGTTTATTAAAGATTCACACACTTAAATATGCCGAGGAAGCCTGCTACAATGGTACGTTGGTTATAAAAGCATTC AGCTCTGGTGTAGAAATAGGCAGTTGTAATTGGATTATGAATGGTCCAAAGGGAGATATTGCTTATCTTTCAAGCTCCAG CTTTTTTTCTGCTCATGCAATGACATTCGATTACCGCAGTCTACAGGGGAGTTGTACATTAATTTATTCAGATTTCTCAG CCTTGAGTGATGTACAAGAGGTTGAGGCTGGGGATAGTTACTCTATTCGAACTGCTGATGCATTATTACCCCAGAGGTAT GAGATTTTGATTTTATTCCCCTTTAGACTCAGAAGTTGTACCCATGGACAAGGACTTCAGTTATTGTTGTACACTTGTGC AAAATTTCAAGTTATCATTCTTTTTTTTTGAAAACACAACGTAATATTGATTAACCAGAAAGAAGTCCAAGAGAACACCC CTCTCAAGATAAGTCTATAAGTCCAAAAACCCCCAAACACATCCCCCGTGTAGACCCAAACATTGCCAAGGGAATAAGCC TCAAGTTATCATTCTTAAGGTTGTAGTGATGAAAATTTATATTTGTTAAAGATTGACTCCCGTATTGATTATTACTGCAG TGTTCAAGATTTGGACGAGTTCAACCTTAACTCCGATGAGAATTCAGAGGAAAAGGAAAAACTGGTTTTCATATGCTCAT GTGCTATAGAGTGTGTCAAAATTGGTGGTTCAGTTCTTGTTCCTGTCAACCGACTTGGAACTATCTTGCAGCTTTTGGAG GAAATTACAACCTCACTTGAAGCTTTGGCTATGAAGGTATGTTCTCAATTGAATGGTTATCAAAATCAAGAAAAATATCA TGAATATATATTATATTTGCGGGCATTATTAATTATCCGTGTTTGAATTGTTGTCTTTTGTCCTGTAAAACCCTATTCTC TCACCCCTTTTTGTTGCATGTTCCTACTCATGGGTAAAAAATCTGTCTTTTGCATTCAGATTCTAGTTGCTTTTCTGATT CGCATTTTCTTCTTTTGATTGCTAAGAGACTTAGACTCATGTTATTGTTTACCAGTGTTCATTTTTAAAATTTCATTGCT TTTCATTTTCATTATTGTGCATGTAATGGGAAAGATAGGAAGAGCCAAAGTTGCATCTTTGAATGTTTGTAAACTGAACT AGAAATCAATTGAGTTTTCTAGTCAAATAAACATAACTGGCAAATGGATTCTTGGAGGAAAGCCTGAGATGCGTGCTCAC TGAATTTTAAGAATTCATAACTTTGCTATATGTAGGTTCCAGTTTATATAATTTCTTCCGTTGCTGAAGAATTGCTGGCA TTGCTTAACGTCATACCAGAGTGGCTTTGCAAACAGCGGCAAGAAAGAGTACTGATCGAAATCTGTATTTGGTCCATTGC ACTTGAATACTTTAATTTGCAAAATTTGACTTGTGTTTACCCACTTTAATTGGTGCTGCAGCTATTTGCTGGGGAACCAT TATTTGCGCATGTCAAGCTCCTAAAAGAGAAAAAGATACACGTGGTTCCTGATGTTCTGTCACCTCAACTTTTGTGAGTG TTTTATCTATCATTGTCATTCCCCCCCCCCCCTTCTATTATAAGCTATAAAGAACTACTATTGACAATGGAGATGTTAAT CGAATTTAGTGTTTCTTCACACTTTCTAGAGCCAAAGTCATGCGCTCTAGTTATGCTAATTATTTGGGGAAAATTTACAC TTCCTAACAGTTTAAGTTTCTGTTAATAGCCTGAAAGTATGTCAAAGCTTTCAATTTTAACAAACTGCATAAACTACAGA TCGCTCTTCCTTGATTATTTTAATTATTATTTGGCTATTTGCTCATAAAAACTGATGTACTGCTTGTAGAATGAATTGGC AAGAGCCATGCATTGTATTTTGTCCTCACTGGACTCTGCGTCTGGGTCCTGTTGTTCATCTGCTTCAACGTTGGAGAAGT GATCCTAAATCTTTACTTATTCTTGAGGTGTGATGTATTCCTCACATAATATAAGTACTTATGATGCTTCATTGAATTAT TTTTATTTTTTATTCTTTTTTAAGAAATATGTCTTGATATCTGTGGACTTGTAAGTTTTGTCCTTTTAATGAAGCTGGAA TGGCTTTGACCATTGTTGTATTGAACTGTTGATATGACTCTTTGCAGGATACTGTGAATCCTGAGATGACACTCTTACCT TTCCAGCCAGTTGCAATGAAGGTTCTTCAATGTATGTCCCCCTCTGGAATAGGGTGGGTATATCTTTCTTTTTACACTCC CTATTTCTAAGCATCGTTGCTCAAGACCTAACATGTATTTTCAAAATGAACACTTTGACATTTGGTCACTAAAATAGTGT AGTTTCTGCTGATGACAATTTGATTTATGTATTTAGCGTTCTCTCAATATTTTGATTGTAGGTTGCAGAAAGTTCAACCT TTGCTGAAGATATTGCAGCCAAAGACTGTTCTGGTAATTGGACAAAGATTACTTTATAGTTATACACTTCATATTGTTTT TAAAGATTATGTGATGAACTGATGATCTGTTTTCATTTAAACTTATCTTATTCTCTAGTTCCCTGAAGATTTGAGGTTGC ACGTCAGATTTCCAAGTGAAAAGTCTTTCTCAGTTTTGTATTATACTGAAGCTGAGACTTTAAAAGTGTCATCTCAAAAA GACAATTCAGAGTTAAAAATTGCAGCTGATTTGGCTTCCCAGTTTTATTGGAAAAACTTCAAAAATGAAGGAATCAGTAT CGCAAGATTAAAGGGGAAGCTATTAATGGAAAATGGTAGATATCACTTGCTGATGGATGATCATGATAGAAATTCCTCAA GAAATATGCCTTTGGTACATTGGAGTTTACCGGATTCAGAAAAGCTTCTGGCTGCATTATCCAAAGTTAGCATCAATGTG GAAACTATAAGTACAAATCAAAGACAAGCTGCCAAGGAACATGGTATGGATGGTGCACAAACTCTGTGTACGGTTCACAC ACTGGAACCATACAAAGCCCTAATAGAGATCGGAACCGCCAGTACTAATATTACCACTGCTGATCCGAACGTGGCTTCTG TAATTTATAAAGCTATAGACAGCATTTTGAATGAGGTTTCTTAGCCCAAGTGAGCATTACCGATGCAGCCACGCTAGTAA ATATAACTGTTTTTTTAAAGTCATTTTGGGTGCTAGGAGGTTTATACATCATATGGCCTGAGGATGTATTTGTCTGTTAA CTTAACCTGTTTGTGGAAAAGGAGTAGAAAAGTAAATGTGCAAGCAATTTTTACATTTGAGTATTTGGAGTAGTTTATAG TAGAGGTAGGTTTTGGCCTAACCAAATCATTTCCCACATCTTTAGAGATTAAAACATTCAACTGTCCAATAAAAATATTG AATTTCCACCTATTTTAATATATGTTATTTAATAAACCAACCTTATTATAAAAGGTTAAAGTCTAACATTAAGTGTCCCT
CDS sequence (LotjaGi3g1v0112900.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGAGAGCTGGGTGGTTGGATGCCCTTGTACAGATGTGAAGGACTGTTTATTAAAGATTCACACACTTAAATATGC CGAGGAAGCCTGCTACAATGGTACGTTGGTTATAAAAGCATTCAGCTCTGGTGTAGAAATAGGCAGTTGTAATTGGATTA TGAATGGTCCAAAGGGAGATATTGCTTATCTTTCAAGCTCCAGCTTTTTTTCTGCTCATGCAATGACATTCGATTACCGC AGTCTACAGGGGAGTTGTACATTAATTTATTCAGATTTCTCAGCCTTGAGTGATGTACAAGAGGTTGAGGCTGGGGATAG TTACTCTATTCGAACTGCTGATGCATTATTACCCCAGAGTGTTCAAGATTTGGACGAGTTCAACCTTAACTCCGATGAGA ATTCAGAGGAAAAGGAAAAACTGGTTTTCATATGCTCATGTGCTATAGAGTGTGTCAAAATTGGTGGTTCAGTTCTTGTT CCTGTCAACCGACTTGGAACTATCTTGCAGCTTTTGGAGGAAATTACAACCTCACTTGAAGCTTTGGCTATGAAGGTTCC AGTTTATATAATTTCTTCCGTTGCTGAAGAATTGCTGGCATTGCTTAACGTCATACCAGAGTGGCTTTGCAAACAGCGGC AAGAAAGACTATTTGCTGGGGAACCATTATTTGCGCATGTCAAGCTCCTAAAAGAGAAAAAGATACACGTGGTTCCTGAT GTTCTGTCACCTCAACTTTTAATGAATTGGCAAGAGCCATGCATTGTATTTTGTCCTCACTGGACTCTGCGTCTGGGTCC TGTTGTTCATCTGCTTCAACGTTGGAGAAGTGATCCTAAATCTTTACTTATTCTTGAGGATACTGTGAATCCTGAGATGA CACTCTTACCTTTCCAGCCAGTTGCAATGAAGGTTCTTCAATGTATGTCCCCCTCTGGAATAGGGTTGCAGAAAGTTCAA CCTTTGCTGAAGATATTGCAGCCAAAGACTGTTCTGTTCCCTGAAGATTTGAGGTTGCACGTCAGATTTCCAAGTGAAAA GTCTTTCTCAGTTTTGTATTATACTGAAGCTGAGACTTTAAAAGTGTCATCTCAAAAAGACAATTCAGAGTTAAAAATTG CAGCTGATTTGGCTTCCCAGTTTTATTGGAAAAACTTCAAAAATGAAGGAATCAGTATCGCAAGATTAAAGGGGAAGCTA TTAATGGAAAATGGTAGATATCACTTGCTGATGGATGATCATGATAGAAATTCCTCAAGAAATATGCCTTTGGTACATTG GAGTTTACCGGATTCAGAAAAGCTTCTGGCTGCATTATCCAAAGTTAGCATCAATGTGGAAACTATAAGTACAAATCAAA GACAAGCTGCCAAGGAACATGGTATGGATGGTGCACAAACTCTGTGTACGGTTCACACACTGGAACCATACAAAGCCCTA ATAGAGATCGGAACCGCCAGTACTAATATTACCACTGCTGATCCGAACGTGGCTTCTGTAATTTATAAAGCTATAGACAG CATTTTGAATGAGGTTTCTTAG
Protein sequence (LotjaGi3g1v0112900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEESWVVGCPCTDVKDCLLKIHTLKYAEEACYNGTLVIKAFSSGVEIGSCNWIMNGPKGDIAYLSSSSFFSAHAMTFDYR SLQGSCTLIYSDFSALSDVQEVEAGDSYSIRTADALLPQSVQDLDEFNLNSDENSEEKEKLVFICSCAIECVKIGGSVLV PVNRLGTILQLLEEITTSLEALAMKVPVYIISSVAEELLALLNVIPEWLCKQRQERLFAGEPLFAHVKLLKEKKIHVVPD VLSPQLLMNWQEPCIVFCPHWTLRLGPVVHLLQRWRSDPKSLLILEDTVNPEMTLLPFQPVAMKVLQCMSPSGIGLQKVQ PLLKILQPKTVLFPEDLRLHVRFPSEKSFSVLYYTEAETLKVSSQKDNSELKIAADLASQFYWKNFKNEGISIARLKGKL LMENGRYHLLMDDHDRNSSRNMPLVHWSLPDSEKLLAALSKVSINVETISTNQRQAAKEHGMDGAQTLCTVHTLEPYKAL IEIGTASTNITTADPNVASVIYKAIDSILNEVS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 11 | 378 | 368 | 5.07E-50 | ||
| PANTHER | 12 | 511 | 500 | 2.0E-160 | ||
| Gene3D | 138 | 294 | 157 | 1.2E-30 | – | |
| Pfam | 168 | 285 | 118 | 1.3E-6 | ||
| SMART | 168 | 293 | 126 | 1.1E-8 | ||
| Coils | 505 | 513 | 9 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | SnRNA processing | Any process involved in the conversion of a primary small nuclear RNA (snRNA) transcript into a mature snRNA molecule. | ||
| Cellular component | Integrator complex | A protein complex that stably associates with the C-terminus of RNA polymerase II and mediates 3'-end processing of small nuclear RNAs generated by RNA polymerase II. |
Expression pattern of LotjaGi3g1v0112900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…