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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0116500 |
| Transcript ID | LotjaGi3g1v0116500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing family protein; TAIR: AT4G20740.1 Pentatricopeptide repeat (PPR-like) superfamily protein; Swiss-Prot: sp|Q9SVH3|PP328_ARATH Pentatricopeptide repeat-containing protein At4g20740; TrEMBL-Plants: tr|G7J1P0|G7J1P0_MEDTR PPR containing plant-like protein; Found in the gene: LotjaGi3g1v0116500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:14251167..14254687) extracted from Lotus japonicus Gifu genome v1.2.
CCAAATTCAGGGCATGCAATGACGACACATAGAGTGGGTCGGACGAGAAAGGTAAAGGTATATGTGATTTTGAATGAGGA GTATTTTGGAGTTTATTAAATTTGGGTAGGATAAGAAACTTAATTGGTGGGTCAAAAATTTAACCCTCTTTTCAGTGTAC TGCAGATTTGCTTAGCAGGGCCTAGTCTCTTGGCCATTTGGGCCAAGAACGTGGAAGCTGAGTTATTTTGAACTATCGTG AAAAAAAACACGTTCGCGTAGAAACAAGTTTTCCCTCTTAGAACTTTTATCAAACAGGTTATGGTCATTATACAGAGAGT TGCAGACGCTGTAAACATGGACCAATTCAATGGCCAAACCTTGATCCTGAGCAACACTCAATTTCCACAGTGAAGCACAG AACTGGATGGTGATGATGGAGGAAAGGAAGAGGAACCAATTTGGTAGTTCACTGTGTAGCGAATGAGTGTTGAGGAGATT CACATTCCCTGAAAATGCCACCACCACCGCGGCCGCCACCGTCACCGGCGAAACCAGACAAATTCTATTTCTTCTACGGC CACCGGAAGCCCGCCCAGAACCGCCCCACCGTCCGCGGCGGCCTCTTCTCCAACCGCCAAACCCTCCCCCCATCCAAACC CAGAAAAACCACCCACCAACAACAACAACCACCCTTCCAAATCCAGAAGTGGGACCCACACTTCCTCCCCCACCGGAACC CCAAACCACCCTCACCATCGCCGTCGCCGTCGTCTTCATTCTCCGCCTCCCTCCGCCTCTCTCCGATCGCCCGTTTCATC CTCGACGCGTTCCGCAAAAACGGTTACAAGTGGGGGCCGCCGGTGGTTACCGAACTCAGCAAGCTCCGCCGGGTGACGCC GAGCCTCGTTGCCGAGGTGCTCAAGGTTCAAACCAATCCCACCCTTTCGTTCAAATTCTTCCACTGGGCTGAGAAGCAGA AGGGTTACCACCATAACTTTGCCTCCTACAATGCCTTTGCCTACTGCATGAACCGTAACAACCACCACCGAGCTGCTGAT CAGCTCCCTGAGCTGATGGATTCGCAGGGGAAGCCGCCGTCCGAGAAGCAGTTTGAGATCTTAATCCGGATGCATTCGGA TGCCGGTAGGGGTCTTAGGGTTTACCATGTGTATGAGAAGATGAGGAACAAGTTTGGTGTGAAACCTAGGGTGTTTTTGT ATAATAGGATCATGGATGCTTTGATTAGGACAGGGCATTTGGATTTGGCGTTATCGGTTTATGATGATTTTAAGGAGGAT GGGTTGGATGAAGAGAGGGTTACGTTTATGGTTTTGGTGAAGGGGTTGTGTCAGGCTGGGAGGATTGATGAGATGTTGGA GGTTTTGGGAAGGATGAGGGAGAAGCTGTGTAGGCCGGATGTGTTTGCCTACACCGTGCTGGTTCGGATTCTGGTTCCGC AGGGGAATTTGGATGGTTGTTTGAGGGTTTGGGAGGAAATGAAGAAAGATAGGGTTGAGCCAGATGTCATGGCTTATGCT ACTATCATTACAGGTCTGTCTAACGGAGGGAGGGTTGAGGAGGGTTATGTGTTGTTCAAGGAGATGAAGAGTAAAGGTCA TTTGATTGATAGAGCGATATATGGCTCGCTGGTTGAGTCGTTTGTGGCAGTGAATAAGGTTGGTGCGGGTTTTGATTTGT TGAAGGATTTGGTGAGCTCAGGGTACCGGGCAGATTTGGGGATTTATAATAACCTTATTGAAGGTTTGTGCAATTTGAAT AAGTTCGAGAAGGCTCACAAGCTTTTCCAAGTCACTATTCAGGAGGGTCTTGAGCCGGACTTTTTATCGGTGAAGCCTCT ATTGGTGTTATATGCTGAAGCGAAACGAATGGAAAATTTTTACAAGTTGCTCCAGCAGATGGAGAAATTAGGTTTTCCAG TTATTGATGATCTCGCCAGATTCTTCTCCATTTTTGTTGAGAAGAAAGGACCAATAATGGCATTGGAGGTATTTTCTTAC TTGAAAGAAAAAGGTTATGTTAGTGTTGACATATACAATATTCTTATGGATTCTCTTCACAAGGTTGGTGAGATGAAGAA AGCATTATCACTCTTTGATGAAATAAATGGTGCAAACTTGAAACCTGACTCATTTTCATATAGTATAGCTATTCTATGCC ATGTTGATCTTGGTGAAATTAAGCAGGCATGTGAATGTCACAATAAGATCATTGAGATGTCTTGCATTCCTTCTATTGCT GCTTATAAATGCCTTACTAAAGGGCTTTGTAAAATTGGAGAGATTGATGAAGCCATGATGCTTGTACGCGATTGCTTAGG CAATGTTACTAGTGGACCTATGGAGTTTATGTATAGTCTTACAGTTATTCATGCATGTAAGTCAAATGATGCTGAGAAGG TGATTGGTGTATTAAATGAGATGATGCAACAAGGTTGCCCTCCAGGTAATGTCGTATGTTCTGCAGTTATCTCTGGCATG TGTAAGTATGGAACAATTGAAGAGGCCAGGAAGGTTTTTTCAAATTTGAGGGAGCGCAAACTGTTGACTGAATCTGATAC GATTGTGTATGACGAGTTTCTAATTGATCACATGAAGAAAAAGACAGCAGACTTGGTTATGTCAGGATTGAAGTTCTTTG GTCTGGAGTCTAAACTAAAGTCAAAAGGCTGTAAGCTGTTGCCAAGTTGAGTAGTGGAGACTGATTAATTCCTTTTTCTT TGAACATGCATAGTGATGCAGAAGAAGCATTTGCGAGAGATCAACAATTCCCTCCAGCGCCCCTTCCATCACTTTGCAAG TAACTTGAATCTTCAATTCAATTATGAAGTGGAAGCCTGCTGACATGTTAACATCTATGGTTATTTGTGCTATTTATAAA GAGTTGTGACTTCTATGAGAAGTATGTTTGATCCAAGATATATGCTTGATCTTGCTATCTCTCAGGTGGATGAAAATGAG TAGATTTGTTAAGATTGAATAATCTGGCTCACCAGGTGTTGATACTATAGTTCTTAATAAGGTGATTACAACTAGGTGTT GCTGTCTTTTGGCAACTAGGGAATTAGGAGGTCATTGTCCCTTCCTTCCATGAGCTAAGGTGATAATTTTTCATTGTTTG AATTGTTATGGATATCTCTTGGAAAAGACAATAAGTTGCTGGTTCATGAAGTGAATGCTTGTGTTTGGTTTGGGGCTTGG AAAAGTTCAGATTGAATAAAAGGATGTCCGAAGGAATCTGATATCAGTAGTTAAAAGAGAAGGGAGTCTACTTGAATGCA GCCTTGCCTTTTGCCAAAAGGCACTTCTGAGAAGGGTTAACCCCGAGATTAGTCACTGTCTTTGTGTCGTCGTCTTACCT AGGTCCCTCGCCGGAAAAATTATTGAAAAAGCTCCTCTTCTTTGTAAATCGTTTGGAGCAGGTCCTCGTCGGAGCCCGGA GCTCCGGCGAGTCATGATTTGGAACGCTGACGGGAACAAGTGATCTGACATGGATTTTAAAAATAAATTACTTTATCAAG C
CDS sequence (LotjaGi3g1v0116500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCACCACCACCGCGGCCGCCACCGTCACCGGCGAAACCAGACAAATTCTATTTCTTCTACGGCCACCGGAAGCCCGC CCAGAACCGCCCCACCGTCCGCGGCGGCCTCTTCTCCAACCGCCAAACCCTCCCCCCATCCAAACCCAGAAAAACCACCC ACCAACAACAACAACCACCCTTCCAAATCCAGAAGTGGGACCCACACTTCCTCCCCCACCGGAACCCCAAACCACCCTCA CCATCGCCGTCGCCGTCGTCTTCATTCTCCGCCTCCCTCCGCCTCTCTCCGATCGCCCGTTTCATCCTCGACGCGTTCCG CAAAAACGGTTACAAGTGGGGGCCGCCGGTGGTTACCGAACTCAGCAAGCTCCGCCGGGTGACGCCGAGCCTCGTTGCCG AGGTGCTCAAGGTTCAAACCAATCCCACCCTTTCGTTCAAATTCTTCCACTGGGCTGAGAAGCAGAAGGGTTACCACCAT AACTTTGCCTCCTACAATGCCTTTGCCTACTGCATGAACCGTAACAACCACCACCGAGCTGCTGATCAGCTCCCTGAGCT GATGGATTCGCAGGGGAAGCCGCCGTCCGAGAAGCAGTTTGAGATCTTAATCCGGATGCATTCGGATGCCGGTAGGGGTC TTAGGGTTTACCATGTGTATGAGAAGATGAGGAACAAGTTTGGTGTGAAACCTAGGGTGTTTTTGTATAATAGGATCATG GATGCTTTGATTAGGACAGGGCATTTGGATTTGGCGTTATCGGTTTATGATGATTTTAAGGAGGATGGGTTGGATGAAGA GAGGGTTACGTTTATGGTTTTGGTGAAGGGGTTGTGTCAGGCTGGGAGGATTGATGAGATGTTGGAGGTTTTGGGAAGGA TGAGGGAGAAGCTGTGTAGGCCGGATGTGTTTGCCTACACCGTGCTGGTTCGGATTCTGGTTCCGCAGGGGAATTTGGAT GGTTGTTTGAGGGTTTGGGAGGAAATGAAGAAAGATAGGGTTGAGCCAGATGTCATGGCTTATGCTACTATCATTACAGG TCTGTCTAACGGAGGGAGGGTTGAGGAGGGTTATGTGTTGTTCAAGGAGATGAAGAGTAAAGGTCATTTGATTGATAGAG CGATATATGGCTCGCTGGTTGAGTCGTTTGTGGCAGTGAATAAGGTTGGTGCGGGTTTTGATTTGTTGAAGGATTTGGTG AGCTCAGGGTACCGGGCAGATTTGGGGATTTATAATAACCTTATTGAAGGTTTGTGCAATTTGAATAAGTTCGAGAAGGC TCACAAGCTTTTCCAAGTCACTATTCAGGAGGGTCTTGAGCCGGACTTTTTATCGGTGAAGCCTCTATTGGTGTTATATG CTGAAGCGAAACGAATGGAAAATTTTTACAAGTTGCTCCAGCAGATGGAGAAATTAGGTTTTCCAGTTATTGATGATCTC GCCAGATTCTTCTCCATTTTTGTTGAGAAGAAAGGACCAATAATGGCATTGGAGGTATTTTCTTACTTGAAAGAAAAAGG TTATGTTAGTGTTGACATATACAATATTCTTATGGATTCTCTTCACAAGGTTGGTGAGATGAAGAAAGCATTATCACTCT TTGATGAAATAAATGGTGCAAACTTGAAACCTGACTCATTTTCATATAGTATAGCTATTCTATGCCATGTTGATCTTGGT GAAATTAAGCAGGCATGTGAATGTCACAATAAGATCATTGAGATGTCTTGCATTCCTTCTATTGCTGCTTATAAATGCCT TACTAAAGGGCTTTGTAAAATTGGAGAGATTGATGAAGCCATGATGCTTGTACGCGATTGCTTAGGCAATGTTACTAGTG GACCTATGGAGTTTATGTATAGTCTTACAGTTATTCATGCATGTAAGTCAAATGATGCTGAGAAGGTGATTGGTGTATTA AATGAGATGATGCAACAAGGTTGCCCTCCAGGTAATGTCGTATGTTCTGCAGTTATCTCTGGCATGTGTAAGTATGGAAC AATTGAAGAGGCCAGGAAGGTTTTTTCAAATTTGAGGGAGCGCAAACTGTTGACTGAATCTGATACGATTGTGTATGACG AGTTTCTAATTGATCACATGAAGAAAAAGACAGCAGACTTGGTTATGTCAGGATTGAAGTTCTTTGGTCTGGAGTCTAAA CTAAAGTCAAAAGGCTGTAAGCTGTTGCCAAGTTGA
Protein sequence (LotjaGi3g1v0116500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPPPPRPPPSPAKPDKFYFFYGHRKPAQNRPTVRGGLFSNRQTLPPSKPRKTTHQQQQPPFQIQKWDPHFLPHRNPKPPS PSPSPSSSFSASLRLSPIARFILDAFRKNGYKWGPPVVTELSKLRRVTPSLVAEVLKVQTNPTLSFKFFHWAEKQKGYHH NFASYNAFAYCMNRNNHHRAADQLPELMDSQGKPPSEKQFEILIRMHSDAGRGLRVYHVYEKMRNKFGVKPRVFLYNRIM DALIRTGHLDLALSVYDDFKEDGLDEERVTFMVLVKGLCQAGRIDEMLEVLGRMREKLCRPDVFAYTVLVRILVPQGNLD GCLRVWEEMKKDRVEPDVMAYATIITGLSNGGRVEEGYVLFKEMKSKGHLIDRAIYGSLVESFVAVNKVGAGFDLLKDLV SSGYRADLGIYNNLIEGLCNLNKFEKAHKLFQVTIQEGLEPDFLSVKPLLVLYAEAKRMENFYKLLQQMEKLGFPVIDDL ARFFSIFVEKKGPIMALEVFSYLKEKGYVSVDIYNILMDSLHKVGEMKKALSLFDEINGANLKPDSFSYSIAILCHVDLG EIKQACECHNKIIEMSCIPSIAAYKCLTKGLCKIGEIDEAMMLVRDCLGNVTSGPMEFMYSLTVIHACKSNDAEKVIGVL NEMMQQGCPPGNVVCSAVISGMCKYGTIEEARKVFSNLRERKLLTESDTIVYDEFLIDHMKKKTADLVMSGLKFFGLESK LKSKGCKLLPS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 89 | 89 | - | – | |
| MobiDBLite | 33 | 63 | 31 | - | – | |
| Gene3D | 135 | 296 | 162 | 8.6E-29 | ||
| PANTHER | 155 | 311 | 157 | 2.7E-96 | – | |
| PANTHER | 155 | 311 | 157 | 2.7E-96 | – | |
| ProSiteProfiles | 161 | 195 | 35 | 7.235 | ||
| ProSiteProfiles | 196 | 226 | 31 | 6.095 | ||
| Pfam | 231 | 280 | 50 | 2.6E-7 | ||
| ProSiteProfiles | 232 | 266 | 35 | 9.24 | ||
| TIGRFAM | 235 | 264 | 30 | 5.5E-4 | ||
| PANTHER | 267 | 389 | 123 | 2.7E-96 | – | |
| PANTHER | 267 | 389 | 123 | 2.7E-96 | – | |
| ProSiteProfiles | 267 | 301 | 35 | 11.312 | ||
| TIGRFAM | 269 | 303 | 35 | 9.9E-7 | ||
| Gene3D | 297 | 388 | 92 | 3.1E-21 | ||
| PANTHER | 299 | 473 | 175 | 2.7E-96 | – | |
| PANTHER | 299 | 473 | 175 | 2.7E-96 | – | |
| Pfam | 301 | 349 | 49 | 4.0E-9 | ||
| ProSiteProfiles | 302 | 336 | 35 | 10.665 | ||
| TIGRFAM | 305 | 338 | 34 | 7.3E-5 | ||
| ProSiteProfiles | 337 | 371 | 35 | 10.654 | ||
| TIGRFAM | 340 | 372 | 33 | 3.2E-6 | ||
| SUPERFAMILY | 352 | 576 | 225 | 2.04E-6 | – | |
| Pfam | 354 | 470 | 117 | 9.1E-7 | ||
| ProSiteProfiles | 372 | 406 | 35 | 7.629 | ||
| Gene3D | 389 | 479 | 91 | 2.5E-12 | ||
| PANTHER | 391 | 606 | 216 | 2.7E-96 | – | |
| PANTHER | 391 | 606 | 216 | 2.7E-96 | – | |
| ProSiteProfiles | 407 | 441 | 35 | 11.06 | ||
| TIGRFAM | 410 | 442 | 33 | 2.0E-5 | ||
| ProSiteProfiles | 442 | 476 | 35 | 7.191 | ||
| Gene3D | 480 | 607 | 128 | 6.7E-20 | ||
| ProSiteProfiles | 510 | 544 | 35 | 10.172 | ||
| Pfam | 511 | 555 | 45 | 4.6E-9 | ||
| TIGRFAM | 513 | 545 | 33 | 1.1E-4 | ||
| ProSiteProfiles | 545 | 579 | 35 | 8.1 | ||
| ProSiteProfiles | 580 | 610 | 31 | 7.158 | ||
| Pfam | 583 | 606 | 24 | 0.48 | ||
| Gene3D | 609 | 683 | 75 | 1.3E-11 | ||
| ProSiteProfiles | 616 | 650 | 35 | 8.254 | ||
| PANTHER | 620 | 693 | 74 | 2.7E-96 | – | |
| PANTHER | 620 | 693 | 74 | 2.7E-96 | – | |
| TIGRFAM | 628 | 650 | 23 | 0.0032 | ||
| Pfam | 628 | 648 | 21 | 0.65 | ||
| ProSiteProfiles | 651 | 685 | 35 | 8.813 | ||
| Pfam | 653 | 682 | 30 | 0.01 | ||
| TIGRFAM | 653 | 683 | 31 | 8.7E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0116500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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