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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0130600 |
| Transcript ID | LotjaGi3g1v0130600.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Isocitrate dehydrogenase [NADP]; TAIR: AT1G54340.1 isocitrate dehydrogenase; Swiss-Prot: sp|P50218|IDHC_TOBAC Isocitrate dehydrogenase [NADP]; TrEMBL-Plants: tr|A0A0R0IMT3|A0A0R0IMT3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0130600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:16311092..16316068) extracted from Lotus japonicus Gifu genome v1.2.
TTGACTTTCACTTTTTTTTCTCTGAACAATCGTTCATTGTTTGCACATGCAGGAGATGAAATGACACGAGTAATTTGGAA ATTGATAAAAGATAAGGTAGGATGTCTTCTTGAACTAGTCTATTCAATCAGTTATACTTATGATTTAATTTTCTAACTTC TACTTTTTGCAGCTTATTTTCCCATTTTTGGAGCTCGATATTAAGTATTTTGACCTTGGCCTTCCTCATCGGGATGCCAC TAATGATAGAGTTACCATTGAAAGTGCTGAAGCTACACTCAAGTATGTGCTCTAATATTTTCCTAAGTGGCATCTTTGCA TATCTTTGATCTTCCGATTGTGTATCATTTTGTTGTTGTTATCTGTGTCACTCTTTCTGCCTTCAATTTTATTTATTTCT TCCATGATTATTATTAAGATCAACAACAGAAGTACTATTAAGTCTCGAAAGGAGTCCACCCTTGTCATGTTTATTTCTTC ACCCAAAAGAGCTTGAAGTATTCAGTACATAGTCATGCTGTTTTTTCACGTATTTGGATTTCAGCTAAGATATCCCATTT ATCTAAATATTTTGGAGATATCTTTGTCGGCCAAAATTTCCATGAAATTGTGGATAGATTATGCAATGGTTGCTCTAATG GTTGAAATATTGTTTTTCATCCAATGGTGCATCTGTTTTTTAGCATTTGATAACTAAATTCAGATTTAAATGCCTCCACA GTGTTAGTTCAACAGTAGATAAACCATTATTCTTCATCAAAGCTTGAAATTGGTGCCATGGGGTTTCCCTCTTGATGTGT GTGTGTTTGTGATATTGTTTTTCATCCAATGGTGCATCTGTTTTTTAGCATTTGATAACTAAATTCAGATTTAAATGCCT CCACAGTGTTAGTTCAACAGTAGATAAACCATTATTCTTCATCAAAGCTTGAAATTGGTGCCATGGGGTTTCCCTCTTGA TGTGTGTGTGTTTGTGTGTGTGGCATGTGCTACTATAACAGGGTGTAGCCTTCCCTCCCACTAGTAGTGGCGCACTGTAG CTGAACGGCCTTCTTTTATATTTAATGATAAAAGGATTATTTAAAATGGAGATGAAACAATAACACCCAAGCCTTTTCCT ACTAGGTGGGATTCGCTACATGAATCAAATGAAAATATATGAGTGTTCTCTCCAAGCACCCAAACCACTTAAGACAGGTC ACTGCCATCTTTTCTACGATGGAAGCTACCTCAACTTTCGCCCTAATGATTTCATTCATAATCGTATCTTGTTTGTGTAA CCACTTAACCATCGTGACATTCTCAAGTCTAAATTGCCTTGTATAATCCTAATGTCGTGTCTTGTGCAACATTTTAATGA TTTAGACAGATAAGAACTAAATATTTAATATTCTAAATATTGTACTGACAATGCTATAGATTACTGAATTGTTCGAGAGA TCGAAGTTAGAACAAAAGAAAGAATGCTCAAACAAGAGCTAATAGTTGGTTCATGACATGGTATGACAGCTTTGTGACTA AAGGGTCTAAAGTTCGATCCTTGTTTGTTGCCCCATTACTCTAATAAAAAAGTTGAATTTCAGCACATGGTAGGTGGGTC TGTACATTGTCCACACTACAAGCCCAATGAGCTCTTGCATGAGGGGGGTGTTAGAATATAATATAAAAACCATTCATGGT CTTCGCCCAAAGCTTTTAGAATAGTTGGTTCATGACAAAACTCAACTATTTTTTATTTTGAATGTTATTATTTTTCAAAT TCCGTGGAGTAGAAAAGCTGTCATTGTTTTTGTTTCTGTATTAATTTTTAAACAAGATTCTCTTATGTGCTGAGGCCGCT TAATATCACCACGGGATTTGCTTCCCTTTCATTGTAGGTATAATGTAGCTATCAAGTGTGCAACTATAACTCCAGGTATT CATATTTTTCCTGATCAGGAATGATGATTACATGCCTTTCCAGTTTCCATGTCAAATTAACTCAAGGCTTTGTACTAACA TGTTGCCTATGTGTTATAATTAAAATTCACATCCAAAGGTTTTATTTTTCATAGATGAAGCTCGTGTCAAGGAGTTTAAC TTGAAACAAATGTGGAAGAGCCCAAATGGGACAATTCGTAACATTTTAAATGGTAACTAAACTTTCTGATGGTTCTTGTA ACCCTGCTTTATGTTCCGGTTATTCAGCTGACATCTTTGGGAACATTCAATCTATGTCCTACAGGTACAGTTTTTAGAGA ACCGATTATCTGCAAAAATGTTCCTCGTCTTGTTTCAGGTTCATAAAAAACTAGCACTTATTTGATATTTGAATTTTACT TTATGATAGCAAGTGTTAATTACTATCTGGCTATGATTCAGGCTGGACAAAGCCAATATGCATTGGAAGACATGCATTCG GTGACCAATATCGGGCAACTGATACAATTATAAGAGGACCAGGAAAGCTAAAATTGGTGTTTGGTAAAGTCACTATCCAG TCAACTGTTTCTCATGACTGAATTAGATCTCAAATACAGTCTTGATGAAGCTGCAAAATTTCTCCACAAAAGCCGAAAGC TTTTCTGTGAATTCATAATAGACCAAAGAGGTCTACAAAATTTTGAAGTATCTTACAGAATTTAGTTGTTCATTTACAGA ACCTAGTGGACATGAAGAAATTAAAGATCTAGAAGTTTATAACTTCGATGGTGCTGGAGGTGTAGCTTTGTCCATGTATA ATACTGATGAGGTTTGCATCTTGATGACCCTTCTTTTTTGTATTCTTCCGTGAAAATTATTTTAACTACCCCGGCATTTA TAATATTATGCTGTGTTGTTCTGGAAACAGTCCATTCAAGCTTTTGCTGAGGCCTCGATGAACATTGCTTACCAGAAAAA ATGGCCTCTCTATCTTAGCACTAAAAATACCATTCTCAAGAAATATGATGGAAGGTATGCTGATATAGTTGTGGTTCATT CTTCTTTATACTTTACTTCTCATTGATTCTAATTGAGATAGAGCCTGTTTGGATACGGACTTATTGGGGATTATCTACTA GAAAAAGCACTAGATAAGTTCCAATAAGTGTTCTTTGGTTCGCATCCAAATGGGTTCATACTATTATAATTGTAGTTGAT CAGACCCCCTCCCCCCCAAAACTCATTTTTAACTCTTTGCTTTTGTGAAGATTCAAGGACATTTTCCAGGAAGTTTTTGA CACACAATGGAGTCAAAAGTTCAAAGCTGCAGGGATATGGTTAGACCATTAGATGAATTTCTTATCATACTGGTCAAAAC CATTTCCATAAGTAGATTGATAACTCACAATCTTGATTCCCAGGTATGAACACCGTCTTATAGATGATATGGTTGCGTAT TCTCTTAAAAGTGATGGAGGTTATGTATGGGCCTGCAAGAATTATGATGGGGATGTGCAAAGTGATTTCATAGCTCAAGG TAAATTTCTAAGCACTCTTATGACCTTCACTTAGTTTTTAGTTCTTGAAAGTCTTTTTTCCTTCCGTTAAAAAAGTGGAT GGGCCAAGATTTTCAGAAATTCATGGCCAACCAATTTGTTGCTTAATATGATCTGAAGAATAGTTTCCATTGAACAGGAT TTGGTTCTCTTGGCTTGATGTCATCAATACTGGTATTGCATTGTTTCAGTTTTCTCGTCATGCATGTCCTTATTTTGTTT CTATCTGTCCTTTTGGTTACATCTCTAGCATGGATGTTGAAGAAGCTAAATTTGGTAACAGGTTTGTCCAGATGGGAAAA CCATTGAATCAGAGGCAGCCCATGGCACTGTTACCCGTCATTATCGAGTTCATCAGAAGGGAGGTGAAACCAGCACAAAC AGTATTGCTTCAATTTTTGCCTGGTCGCGAGGTCTTGCACATAGGTAAGTATTGAAATTGAAACCCATCTGATTAATTTT CTGCACTCTAGATTCCATAGAATCAGATCTTTTTCCATTATAGGTTTATAGCTCATAATGTAGATGGTAGGCTAAGTAGA TTAAGGTGTTGGTTTATGCTTTTTCTAAGAAAGAAATTTATTTAAAAAAAATGTTTAAAAAGAGCACTATAATTAGAATT TTTTTTAAGAAAGTAAAAACCTAAGACAAAGATGTCTTATAGTCCTCCCAAGATAAAGATGTCTTTAATTAAGAAACAAT TTAAGGTTCTATAATAATTTGATAAGCTTAAAAATTTACTGTTCTATGTTTTTCCAAAATGGATTCTCGCAATTGATTTA AGTCCATGTCTTTTTCTAGCAGAATCCTAGAAAAAGAGTGACTGGTCATTATAAATGTAGAATTGGTAATTTATACATGG CTCAATGGTACAACTGCAGTTGAGGATTCAAGTCCATGTCTTTTTCACCAGAGCCTATTTGGTTTGAGAAAACACTCTTT TCTTTTTATTTTTGTGAAAAATAGCCTGTTTTTAATTTTTTACCTAGTTTAAAATATTTATAAATTATTTTAACTGTTTA CTATACAATTTTTTAACACAAAAATGTCAAAAAATAAAGTGAAAATATGATGACACATTTGTAATCATTAATGATAAGAT ATAGAAAACTTTTGTTGGGAAGCTTATTCAAGCACAAATAAACTGTATCATAAAAATACTTTTTTTCAAAGCTTTTGCAA CCGCACCCTTATCTTTGCAGGGCAAAGTTGGATGGAAATGCTAGATTGTCGGACTTTACTGAGAAACTGGAAACAGCATG CATTGGAACAGTTGAATTGGGAAAGATGACAAAGGATCTCGCGCTTCTTGTTCATGGACCTAAGTAATTTCTGGAACTTG GATAGTTCTTTCTGAATGCTATATATCTATTTAGCTGTTTATGCCTTTTAAATTAAGACTTCTTGCTATTTATCTTTTTG AAGGGTTTATAGATCCCAGTATTTCAATACTGAAGAGTTCATTGATGCCGTAGCGGATCAGCTGAGAACAAGATTATCTA CACAAGCGAAGCTATAA
CDS sequence (LotjaGi3g1v0130600.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACACGAGTAATTTGGAAATTGATAAAAGATAAGCTTATTTTCCCATTTTTGGAGCTCGATATTAAGTATTTTGACCT TGGCCTTCCTCATCGGGATGCCACTAATGATAGAGTTACCATTGAAAGTGCTGAAGCTACACTCAAGTATAATGTAGCTA TCAAGTGTGCAACTATAACTCCAGGTACAGTTTTTAGAGAACCGATTATCTGCAAAAATGTTCCTCGTCTTGTTTCAGGC TGGACAAAGCCAATATGCATTGGAAGACATGCATTCGGTGACCAATATCGGGCAACTGATACAATTATAAGAGGACCAGG AAAGCTAAAATTGGTGTTTGAACCTAGTGGACATGAAGAAATTAAAGATCTAGAAGTTTATAACTTCGATGGTGCTGGAG GTGTAGCTTTGTCCATGTATAATACTGATGAGTCCATTCAAGCTTTTGCTGAGGCCTCGATGAACATTGCTTACCAGAAA AAATGGCCTCTCTATCTTAGCACTAAAAATACCATTCTCAAGAAATATGATGGAAGATTCAAGGACATTTTCCAGGAAGT TTTTGACACACAATGGAGTCAAAAGTTCAAAGCTGCAGGGATATGGTATGAACACCGTCTTATAGATGATATGGTTGCGT ATTCTCTTAAAAGTGATGGAGGTTATGTATGGGCCTGCAAGAATTATGATGGGGATGTGCAAAGTGATTTCATAGCTCAA GGATTTGGTTCTCTTGGCTTGATGTCATCAATACTGGTTTGTCCAGATGGGAAAACCATTGAATCAGAGGCAGCCCATGG CACTGTTACCCGTCATTATCGAGTTCATCAGAAGGGAGGTGAAACCAGCACAAACAGTATTGCTTCAATTTTTGCCTGGT CGCGAGGTCTTGCACATAGGGCAAAGTTGGATGGAAATGCTAGATTGTCGGACTTTACTGAGAAACTGGAAACAGCATGC ATTGGAACAGTTGAATTGGGAAAGATGACAAAGGATCTCGCGCTTCTTGTTCATGGACCTAAGGTTTATAGATCCCAGTA TTTCAATACTGAAGAGTTCATTGATGCCGTAGCGGATCAGCTGAGAACAAGATTATCTACACAAGCGAAGCTATAA
Protein sequence (LotjaGi3g1v0130600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTRVIWKLIKDKLIFPFLELDIKYFDLGLPHRDATNDRVTIESAEATLKYNVAIKCATITPGTVFREPIICKNVPRLVSG WTKPICIGRHAFGDQYRATDTIIRGPGKLKLVFEPSGHEEIKDLEVYNFDGAGGVALSMYNTDESIQAFAEASMNIAYQK KWPLYLSTKNTILKKYDGRFKDIFQEVFDTQWSQKFKAAGIWYEHRLIDDMVAYSLKSDGGYVWACKNYDGDVQSDFIAQ GFGSLGLMSSILVCPDGKTIESEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDGNARLSDFTEKLETAC IGTVELGKMTKDLALLVHGPKVYRSQYFNTEEFIDAVADQLRTRLSTQAKL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 1 | 365 | 365 | 5.76E-127 | – | |
| SMART | 1 | 357 | 357 | 1.3E-87 | ||
| PANTHER | 1 | 61 | 61 | 3.0E-248 | – | |
| Gene3D | 1 | 62 | 62 | 2.8E-26 | – | |
| PANTHER | 1 | 61 | 61 | 3.0E-248 | ||
| PIRSF | 1 | 62 | 62 | 6.0E-29 | ||
| Pfam | 58 | 357 | 300 | 4.5E-61 | ||
| PIRSF | 61 | 368 | 308 | 3.0E-157 | ||
| PANTHER | 62 | 371 | 310 | 3.0E-248 | ||
| TIGRFAM | 62 | 366 | 305 | 7.1E-171 | ||
| PANTHER | 62 | 371 | 310 | 3.0E-248 | – | |
| Gene3D | 63 | 367 | 305 | 1.3E-154 | – | |
| ProSitePatterns | 228 | 247 | 20 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Magnesium ion binding | Interacting selectively and non-covalently with magnesium (Mg) ions. | ||
| Molecular function | Isocitrate dehydrogenase (NADP+) activity | Catalysis of the reaction: isocitrate + NADP+ = 2-oxoglutarate + CO2 + NADPH + H+. | ||
| Biological process | Isocitrate metabolic process | The chemical reactions and pathways involving isocitrate, the anion of isocitric acid, 1-hydroxy-1,2,3-propanetricarboxylic acid. Isocitrate is an important intermediate in the TCA cycle and the glycoxylate cycle. | ||
| Molecular function | Oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP. | ||
| Molecular function | NAD binding | Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi3g1v0130600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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