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LotjaGi3g1v0130600.4

Overview

Field Value
Gene ID LotjaGi3g1v0130600
Transcript ID LotjaGi3g1v0130600.4
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Isocitrate dehydrogenase [NADP]; TAIR: AT1G54340.1 isocitrate dehydrogenase; Swiss-Prot: sp|P50218|IDHC_TOBAC Isocitrate dehydrogenase [NADP]; TrEMBL-Plants: tr|A0A0B2QN79|A0A0B2QN79_GLYSO Isocitrate dehydrogenase [NADP]; Found in the gene: LotjaGi3g1v0130600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:16311092..16316068) extracted from Lotus japonicus Gifu genome v1.2.

TTGACTTTCACTTTTTTTTCTCTGAACAATCGTTCATTGTTTGCACATGCAGGAGATGAAATGACACGAGTAATTTGGAA ATTGATAAAAGATAAGGTAGGATGTCTTCTTGAACTAGTCTATTCAATCAGTTATACTTATGATTTAATTTTCTAACTTC TACTTTTTGCAGCTTATTTTCCCATTTTTGGAGCTCGATATTAAGTATTTTGACCTTGGCCTTCCTCATCGGGATGCCAC TAATGATAGAGTTACCATTGAAAGTGCTGAAGCTACACTCAAGTATGTGCTCTAATATTTTCCTAAGTGGCATCTTTGCA TATCTTTGATCTTCCGATTGTGTATCATTTTGTTGTTGTTATCTGTGTCACTCTTTCTGCCTTCAATTTTATTTATTTCT TCCATGATTATTATTAAGATCAACAACAGAAGTACTATTAAGTCTCGAAAGGAGTCCACCCTTGTCATGTTTATTTCTTC ACCCAAAAGAGCTTGAAGTATTCAGTACATAGTCATGCTGTTTTTTCACGTATTTGGATTTCAGCTAAGATATCCCATTT ATCTAAATATTTTGGAGATATCTTTGTCGGCCAAAATTTCCATGAAATTGTGGATAGATTATGCAATGGTTGCTCTAATG GTTGAAATATTGTTTTTCATCCAATGGTGCATCTGTTTTTTAGCATTTGATAACTAAATTCAGATTTAAATGCCTCCACA GTGTTAGTTCAACAGTAGATAAACCATTATTCTTCATCAAAGCTTGAAATTGGTGCCATGGGGTTTCCCTCTTGATGTGT GTGTGTTTGTGATATTGTTTTTCATCCAATGGTGCATCTGTTTTTTAGCATTTGATAACTAAATTCAGATTTAAATGCCT CCACAGTGTTAGTTCAACAGTAGATAAACCATTATTCTTCATCAAAGCTTGAAATTGGTGCCATGGGGTTTCCCTCTTGA TGTGTGTGTGTTTGTGTGTGTGGCATGTGCTACTATAACAGGGTGTAGCCTTCCCTCCCACTAGTAGTGGCGCACTGTAG CTGAACGGCCTTCTTTTATATTTAATGATAAAAGGATTATTTAAAATGGAGATGAAACAATAACACCCAAGCCTTTTCCT ACTAGGTGGGATTCGCTACATGAATCAAATGAAAATATATGAGTGTTCTCTCCAAGCACCCAAACCACTTAAGACAGGTC ACTGCCATCTTTTCTACGATGGAAGCTACCTCAACTTTCGCCCTAATGATTTCATTCATAATCGTATCTTGTTTGTGTAA CCACTTAACCATCGTGACATTCTCAAGTCTAAATTGCCTTGTATAATCCTAATGTCGTGTCTTGTGCAACATTTTAATGA TTTAGACAGATAAGAACTAAATATTTAATATTCTAAATATTGTACTGACAATGCTATAGATTACTGAATTGTTCGAGAGA TCGAAGTTAGAACAAAAGAAAGAATGCTCAAACAAGAGCTAATAGTTGGTTCATGACATGGTATGACAGCTTTGTGACTA AAGGGTCTAAAGTTCGATCCTTGTTTGTTGCCCCATTACTCTAATAAAAAAGTTGAATTTCAGCACATGGTAGGTGGGTC TGTACATTGTCCACACTACAAGCCCAATGAGCTCTTGCATGAGGGGGGTGTTAGAATATAATATAAAAACCATTCATGGT CTTCGCCCAAAGCTTTTAGAATAGTTGGTTCATGACAAAACTCAACTATTTTTTATTTTGAATGTTATTATTTTTCAAAT TCCGTGGAGTAGAAAAGCTGTCATTGTTTTTGTTTCTGTATTAATTTTTAAACAAGATTCTCTTATGTGCTGAGGCCGCT TAATATCACCACGGGATTTGCTTCCCTTTCATTGTAGGTATAATGTAGCTATCAAGTGTGCAACTATAACTCCAGGTATT CATATTTTTCCTGATCAGGAATGATGATTACATGCCTTTCCAGTTTCCATGTCAAATTAACTCAAGGCTTTGTACTAACA TGTTGCCTATGTGTTATAATTAAAATTCACATCCAAAGGTTTTATTTTTCATAGATGAAGCTCGTGTCAAGGAGTTTAAC TTGAAACAAATGTGGAAGAGCCCAAATGGGACAATTCGTAACATTTTAAATGGTAACTAAACTTTCTGATGGTTCTTGTA ACCCTGCTTTATGTTCCGGTTATTCAGCTGACATCTTTGGGAACATTCAATCTATGTCCTACAGGTACAGTTTTTAGAGA ACCGATTATCTGCAAAAATGTTCCTCGTCTTGTTTCAGGTTCATAAAAAACTAGCACTTATTTGATATTTGAATTTTACT TTATGATAGCAAGTGTTAATTACTATCTGGCTATGATTCAGGCTGGACAAAGCCAATATGCATTGGAAGACATGCATTCG GTGACCAATATCGGGCAACTGATACAATTATAAGAGGACCAGGAAAGCTAAAATTGGTGTTTGGTAAAGTCACTATCCAG TCAACTGTTTCTCATGACTGAATTAGATCTCAAATACAGTCTTGATGAAGCTGCAAAATTTCTCCACAAAAGCCGAAAGC TTTTCTGTGAATTCATAATAGACCAAAGAGGTCTACAAAATTTTGAAGTATCTTACAGAATTTAGTTGTTCATTTACAGA ACCTAGTGGACATGAAGAAATTAAAGATCTAGAAGTTTATAACTTCGATGGTGCTGGAGGTGTAGCTTTGTCCATGTATA ATACTGATGAGGTTTGCATCTTGATGACCCTTCTTTTTTGTATTCTTCCGTGAAAATTATTTTAACTACCCCGGCATTTA TAATATTATGCTGTGTTGTTCTGGAAACAGTCCATTCAAGCTTTTGCTGAGGCCTCGATGAACATTGCTTACCAGAAAAA ATGGCCTCTCTATCTTAGCACTAAAAATACCATTCTCAAGAAATATGATGGAAGGTATGCTGATATAGTTGTGGTTCATT CTTCTTTATACTTTACTTCTCATTGATTCTAATTGAGATAGAGCCTGTTTGGATACGGACTTATTGGGGATTATCTACTA GAAAAAGCACTAGATAAGTTCCAATAAGTGTTCTTTGGTTCGCATCCAAATGGGTTCATACTATTATAATTGTAGTTGAT CAGACCCCCTCCCCCCCAAAACTCATTTTTAACTCTTTGCTTTTGTGAAGATTCAAGGACATTTTCCAGGAAGTTTTTGA CACACAATGGAGTCAAAAGTTCAAAGCTGCAGGGATATGGTTAGACCATTAGATGAATTTCTTATCATACTGGTCAAAAC CATTTCCATAAGTAGATTGATAACTCACAATCTTGATTCCCAGGTATGAACACCGTCTTATAGATGATATGGTTGCGTAT TCTCTTAAAAGTGATGGAGGTTATGTATGGGCCTGCAAGAATTATGATGGGGATGTGCAAAGTGATTTCATAGCTCAAGG TAAATTTCTAAGCACTCTTATGACCTTCACTTAGTTTTTAGTTCTTGAAAGTCTTTTTTCCTTCCGTTAAAAAAGTGGAT GGGCCAAGATTTTCAGAAATTCATGGCCAACCAATTTGTTGCTTAATATGATCTGAAGAATAGTTTCCATTGAACAGGAT TTGGTTCTCTTGGCTTGATGTCATCAATACTGGTATTGCATTGTTTCAGTTTTCTCGTCATGCATGTCCTTATTTTGTTT CTATCTGTCCTTTTGGTTACATCTCTAGCATGGATGTTGAAGAAGCTAAATTTGGTAACAGGTTTGTCCAGATGGGAAAA CCATTGAATCAGAGGCAGCCCATGGCACTGTTACCCGTCATTATCGAGTTCATCAGAAGGGAGGTGAAACCAGCACAAAC AGTATTGCTTCAATTTTTGCCTGGTCGCGAGGTCTTGCACATAGGTAAGTATTGAAATTGAAACCCATCTGATTAATTTT CTGCACTCTAGATTCCATAGAATCAGATCTTTTTCCATTATAGGTTTATAGCTCATAATGTAGATGGTAGGCTAAGTAGA TTAAGGTGTTGGTTTATGCTTTTTCTAAGAAAGAAATTTATTTAAAAAAAATGTTTAAAAAGAGCACTATAATTAGAATT TTTTTTAAGAAAGTAAAAACCTAAGACAAAGATGTCTTATAGTCCTCCCAAGATAAAGATGTCTTTAATTAAGAAACAAT TTAAGGTTCTATAATAATTTGATAAGCTTAAAAATTTACTGTTCTATGTTTTTCCAAAATGGATTCTCGCAATTGATTTA AGTCCATGTCTTTTTCTAGCAGAATCCTAGAAAAAGAGTGACTGGTCATTATAAATGTAGAATTGGTAATTTATACATGG CTCAATGGTACAACTGCAGTTGAGGATTCAAGTCCATGTCTTTTTCACCAGAGCCTATTTGGTTTGAGAAAACACTCTTT TCTTTTTATTTTTGTGAAAAATAGCCTGTTTTTAATTTTTTACCTAGTTTAAAATATTTATAAATTATTTTAACTGTTTA CTATACAATTTTTTAACACAAAAATGTCAAAAAATAAAGTGAAAATATGATGACACATTTGTAATCATTAATGATAAGAT ATAGAAAACTTTTGTTGGGAAGCTTATTCAAGCACAAATAAACTGTATCATAAAAATACTTTTTTTCAAAGCTTTTGCAA CCGCACCCTTATCTTTGCAGGGCAAAGTTGGATGGAAATGCTAGATTGTCGGACTTTACTGAGAAACTGGAAACAGCATG CATTGGAACAGTTGAATTGGGAAAGATGACAAAGGATCTCGCGCTTCTTGTTCATGGACCTAAGTAATTTCTGGAACTTG GATAGTTCTTTCTGAATGCTATATATCTATTTAGCTGTTTATGCCTTTTAAATTAAGACTTCTTGCTATTTATCTTTTTG AAGGGTTTATAGATCCCAGTATTTCAATACTGAAGAGTTCATTGATGCCGTAGCGGATCAGCTGAGAACAAGATTATCTA CACAAGCGAAGCTATAA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0130600.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGACACGAGTAATTTGGAAATTGATAAAAGATAAGCTTATTTTCCCATTTTTGGAGCTCGATATTAAGTATTTTGACCT TGGCCTTCCTCATCGGGATGCCACTAATGATAGAGTTACCATTGAAAGTGCTGAAGCTACACTCAAGTATAATGTAGCTA TCAAGTGTGCAACTATAACTCCAGATGAAGCTCGTGTCAAGGAGTTTAACTTGAAACAAATGTGGAAGAGCCCAAATGGG ACAATTCGTAACATTTTAAATGGTACAGTTTTTAGAGAACCGATTATCTGCAAAAATGTTCCTCGTCTTGTTTCAGGCTG GACAAAGCCAATATGCATTGGAAGACATGCATTCGGTGACCAATATCGGGCAACTGATACAATTATAAGAGGACCAGGAA AGCTAAAATTGGTGTTTGAACCTAGTGGACATGAAGAAATTAAAGATCTAGAAGTTTATAACTTCGATGGTGCTGGAGGT GTAGCTTTGTCCATGTATAATACTGATGAGTCCATTCAAGCTTTTGCTGAGGCCTCGATGAACATTGCTTACCAGAAAAA ATGGCCTCTCTATCTTAGCACTAAAAATACCATTCTCAAGAAATATGATGGAAGATTCAAGGACATTTTCCAGGAAGTTT TTGACACACAATGGAGTCAAAAGTTCAAAGCTGCAGGGATATGGTATGAACACCGTCTTATAGATGATATGGTTGCGTAT TCTCTTAAAAGTGATGGAGGTTATGTATGGGCCTGCAAGAATTATGATGGGGATGTGCAAAGTGATTTCATAGCTCAAGG ATTTGGTTCTCTTGGCTTGATGTCATCAATACTGGTTTGTCCAGATGGGAAAACCATTGAATCAGAGGCAGCCCATGGCA CTGTTACCCGTCATTATCGAGTTCATCAGAAGGGAGGTGAAACCAGCACAAACAGTATTGCTTCAATTTTTGCCTGGTCG CGAGGTCTTGCACATAGGGCAAAGTTGGATGGAAATGCTAGATTGTCGGACTTTACTGAGAAACTGGAAACAGCATGCAT TGGAACAGTTGAATTGGGAAAGATGACAAAGGATCTCGCGCTTCTTGTTCATGGACCTAAGGTTTATAGATCCCAGTATT TCAATACTGAAGAGTTCATTGATGCCGTAGCGGATCAGCTGAGAACAAGATTATCTACACAAGCGAAGCTATAA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0130600.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MTRVIWKLIKDKLIFPFLELDIKYFDLGLPHRDATNDRVTIESAEATLKYNVAIKCATITPDEARVKEFNLKQMWKSPNG TIRNILNGTVFREPIICKNVPRLVSGWTKPICIGRHAFGDQYRATDTIIRGPGKLKLVFEPSGHEEIKDLEVYNFDGAGG VALSMYNTDESIQAFAEASMNIAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVFDTQWSQKFKAAGIWYEHRLIDDMVAY SLKSDGGYVWACKNYDGDVQSDFIAQGFGSLGLMSSILVCPDGKTIESEAAHGTVTRHYRVHQKGGETSTNSIASIFAWS RGLAHRAKLDGNARLSDFTEKLETACIGTVELGKMTKDLALLVHGPKVYRSQYFNTEEFIDAVADQLRTRLSTQAKL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SUPERFAMILY
SSF53659
1 391 391 2.3E-142 –
PANTHER
PTHR11822:SF29
1 397 397 3.4E-273 –
Gene3D
G3DSA:3.40.718.10
1 395 395 1.8E-209 –
TIGRFAM
TIGR00127
1 392 392 2.3E-227
IPR004790
PIRSF
PIRSF000108
1 394 394 8.6E-214
IPR004790
PANTHER
PTHR11822
1 397 397 3.4E-273
IPR004790
SMART
SM01329
1 383 383 3.4E-113
IPR024084
Pfam
PF00180
1 383 383 4.0E-82
IPR024084
ProSitePatterns
PS00470
254 273 20 -
IPR019818

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000287
Molecular function Magnesium ion binding Interacting selectively and non-covalently with magnesium (Mg) ions.
Subterm of
GO:0004450
Molecular function Isocitrate dehydrogenase (NADP+) activity Catalysis of the reaction: isocitrate + NADP+ = 2-oxoglutarate + CO2 + NADPH + H+.
Subterm of
GO:0006102
Biological process Isocitrate metabolic process The chemical reactions and pathways involving isocitrate, the anion of isocitric acid, 1-hydroxy-1,2,3-propanetricarboxylic acid. Isocitrate is an important intermediate in the TCA cycle and the glycoxylate cycle.
Subterm of
GO:0016616
Molecular function Oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP.
Subterm of
GO:0051287
Molecular function NAD binding Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH.
Subterm of
GO:0055114
Biological process Oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0130600.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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