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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0131000 |
| Transcript ID | LotjaGi3g1v0131000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Atp-dependent rna helicase; TAIR: AT1G12770.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q8W4E1|RH47_ARATH DEAD-box ATP-dependent RNA helicase 47, mitochondrial; TrEMBL-Plants: tr|V7BT27|V7BT27_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0131000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:16349367..16351419) extracted from Lotus japonicus Gifu genome v1.2.
CTCGCTAGAAACCCTCTCACAAGAACAGTGTGGTGGCAGCAGTAGCGACAAGCTTCCCACATCTCTTCCCAAAAACAGAA CCAACAAGGTTTCAACTTTTCACTGTCGTTAACTTCTCGCCAATAGGTATAAGGTTGCTATTTTTTTGTAGAATCATTCC CAATGAGAAGGGCATTGGCCACTTCTAGGTTTGCTTGGTTTCACAGTAGTGTCCATTGTAGGAGCCAGGTGGAACCCCAT CATGGTTCCCTCACTCTTTCAAGCATTGGACTTCATAGTGAAACAGCAGCAGCATCAAATAAGCCTAATAAGCCATTAGG TTCCACCTCTGAATCTCTCAAGAACAAAGGAAAGCCATTTGGCAGTAATGAGAGGGAACCAGTTAGGGTTATAGAGAAAC AACAGCAAATAGAGCCTGCCCCTTTTGCTGCCAAGTCATTTTCAGAACTTGGCCTTCCTAATGTGTTGGTTGAGAGGCTA AAAAATGAGGGTTTCGCGGTTCCAACAGAGGTTCAGTGTGCTGCAGTTCCTACCATTCTGAAGAACCATGATGTTATCAT TGAGTCTTGGAAAGGTTCAGGGAAAACATTGGCTTATCTCCTTCCTATTTTATCTGCTATTGGGCCACTCAGGAATAAGT TTCCTCAAGGAGATGGCGATGGTGGTGAGCCTGCGAAGAAATTGGGAATAGAAGCATTGATTGTTGCTCCTTCGAGGGAG ATTGGAATGCAGATAGTGATGGAACTTGAAAAGATACTAGGAAGCGATAACAAGAGAGTGGTTCAGCAGTTAGTGGGAGG CGGGAACCGAAGCCGGCAGGAAGAAGCTCTCAGGAAAAATAAACCTGCCATTGTTGTTGGGACACCTAGTAGAATAGCCG AGCTTAGTGCAGCTAGAAAACTTCGCACCCTTGGATGTCGTTTTCTAGTATTGGATGAAGTTGATGTACTCTTGTCCTCT AATTTACGGAAAGACATGCACCGGATGTTGGAGCATGTGGGGAGAAGATCCGATGCAGGTGCAGACCCAAACTCAAATGC TGAAAGGGCTGAGCACCAGTTAATAATGGTTTCTGCAACTGTGTCGTCCTCTGTTGTAAGTGCAGCTAGGAGCTGGGGTT GTGACCCGCTTCTTGTCCGAGATAACAAGGTTGTCCCACTTGAAACCGTGACTCCCGCTGAGCCTGTCAAATTGGCAATA TCTTCAGCCAGCTCCAGTCCTAACTCATCCATGCCATCTCAGGCAGCAGTAGAGAGTCTACCTCCAGCATTGAAGCACTA TTACTGTGTAGTAAGGTTGCAGCACAAGGTTGATACATTGAGAAGGTGTATTTATGCGCTGCACGCCAAATATGTGATAG CTTTCATGAACCATACTAAGCAGCTAAAAGATGTTGTTTGCAAGCTGGAGGCCCGTGGGATGAAAGCTGCCGAGTTACAT GGGGATCTTGGGGAGCTTGCGAGGTCAACAATTCTGAAGAAATTCAAGAATGGTGATGTGAGAGTTCTGGTGACAACTGA ATTATCAGCAAGGGGTCTGGATGTGGCAAAATGCGATCTTGTGGTTAATCTGGAGTTGCCTACGGATTCAATTCACTATG CTCACCGAGCTGGCCGAATTGGTCGGCTTGGTAGGAATGGAACAGTGCTAACCATATGCAAAGATCCAGAAGTTTTTGTT CTGAAGAAATTGCAGAAGCAGCTTGGAATACCAATACCATGTTGTGATATTGCAGAGAGAAAGCTGGTTGTTACTGCAGA AGATAAAGCACTAAGCACTCCTTGAAGAAGAGGTGTTACATTTTTGCATCTTTTTAGGTTGACAATGCAGTTTCCATGTT CCCTGTATTTGTTCATTGAGGTTATCTTTCTTGTTCTTTTGGTGCTTTCTTCCTGAACCGGTTTAACTTATTTATATGCA TCAAGGCTGAAGGCTATAGTTAGGAGATTGCTTCTTGCTTATTTTACTAATTAACAACTTCTACTTGAGTGTACATTAGA AACATGAGTTTAGTTTGCATTTTAAGTTGAATATAAGAGGTATATACTGATAA
CDS sequence (LotjaGi3g1v0131000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGAAGGGCATTGGCCACTTCTAGGTTTGCTTGGTTTCACAGTAGTGTCCATTGTAGGAGCCAGGTGGAACCCCATCA TGGTTCCCTCACTCTTTCAAGCATTGGACTTCATAGTGAAACAGCAGCAGCATCAAATAAGCCTAATAAGCCATTAGGTT CCACCTCTGAATCTCTCAAGAACAAAGGAAAGCCATTTGGCAGTAATGAGAGGGAACCAGTTAGGGTTATAGAGAAACAA CAGCAAATAGAGCCTGCCCCTTTTGCTGCCAAGTCATTTTCAGAACTTGGCCTTCCTAATGTGTTGGTTGAGAGGCTAAA AAATGAGGGTTTCGCGGTTCCAACAGAGGTTCAGTGTGCTGCAGTTCCTACCATTCTGAAGAACCATGATGTTATCATTG AGTCTTGGAAAGGTTCAGGGAAAACATTGGCTTATCTCCTTCCTATTTTATCTGCTATTGGGCCACTCAGGAATAAGTTT CCTCAAGGAGATGGCGATGGTGGTGAGCCTGCGAAGAAATTGGGAATAGAAGCATTGATTGTTGCTCCTTCGAGGGAGAT TGGAATGCAGATAGTGATGGAACTTGAAAAGATACTAGGAAGCGATAACAAGAGAGTGGTTCAGCAGTTAGTGGGAGGCG GGAACCGAAGCCGGCAGGAAGAAGCTCTCAGGAAAAATAAACCTGCCATTGTTGTTGGGACACCTAGTAGAATAGCCGAG CTTAGTGCAGCTAGAAAACTTCGCACCCTTGGATGTCGTTTTCTAGTATTGGATGAAGTTGATGTACTCTTGTCCTCTAA TTTACGGAAAGACATGCACCGGATGTTGGAGCATGTGGGGAGAAGATCCGATGCAGGTGCAGACCCAAACTCAAATGCTG AAAGGGCTGAGCACCAGTTAATAATGGTTTCTGCAACTGTGTCGTCCTCTGTTGTAAGTGCAGCTAGGAGCTGGGGTTGT GACCCGCTTCTTGTCCGAGATAACAAGGTTGTCCCACTTGAAACCGTGACTCCCGCTGAGCCTGTCAAATTGGCAATATC TTCAGCCAGCTCCAGTCCTAACTCATCCATGCCATCTCAGGCAGCAGTAGAGAGTCTACCTCCAGCATTGAAGCACTATT ACTGTGTAGTAAGGTTGCAGCACAAGGTTGATACATTGAGAAGGTGTATTTATGCGCTGCACGCCAAATATGTGATAGCT TTCATGAACCATACTAAGCAGCTAAAAGATGTTGTTTGCAAGCTGGAGGCCCGTGGGATGAAAGCTGCCGAGTTACATGG GGATCTTGGGGAGCTTGCGAGGTCAACAATTCTGAAGAAATTCAAGAATGGTGATGTGAGAGTTCTGGTGACAACTGAAT TATCAGCAAGGGGTCTGGATGTGGCAAAATGCGATCTTGTGGTTAATCTGGAGTTGCCTACGGATTCAATTCACTATGCT CACCGAGCTGGCCGAATTGGTCGGCTTGGTAGGAATGGAACAGTGCTAACCATATGCAAAGATCCAGAAGTTTTTGTTCT GAAGAAATTGCAGAAGCAGCTTGGAATACCAATACCATGTTGTGATATTGCAGAGAGAAAGCTGGTTGTTACTGCAGAAG ATAAAGCACTAAGCACTCCTTGA
Protein sequence (LotjaGi3g1v0131000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRRALATSRFAWFHSSVHCRSQVEPHHGSLTLSSIGLHSETAAASNKPNKPLGSTSESLKNKGKPFGSNEREPVRVIEKQ QQIEPAPFAAKSFSELGLPNVLVERLKNEGFAVPTEVQCAAVPTILKNHDVIIESWKGSGKTLAYLLPILSAIGPLRNKF PQGDGDGGEPAKKLGIEALIVAPSREIGMQIVMELEKILGSDNKRVVQQLVGGGNRSRQEEALRKNKPAIVVGTPSRIAE LSAARKLRTLGCRFLVLDEVDVLLSSNLRKDMHRMLEHVGRRSDAGADPNSNAERAEHQLIMVSATVSSSVVSAARSWGC DPLLVRDNKVVPLETVTPAEPVKLAISSASSSPNSSMPSQAAVESLPPALKHYYCVVRLQHKVDTLRRCIYALHAKYVIA FMNHTKQLKDVVCKLEARGMKAAELHGDLGELARSTILKKFKNGDVRVLVTTELSARGLDVAKCDLVVNLELPTDSIHYA HRAGRIGRLGRNGTVLTICKDPEVFVLKKLQKQLGIPIPCCDIAERKLVVTAEDKALSTP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 3 | 3 | - | – | |
| Phobius | 1 | 19 | 19 | - | – | |
| Phobius | 4 | 14 | 11 | - | – | |
| Phobius | 15 | 19 | 5 | - | – | |
| Phobius | 20 | 540 | 521 | - | – | |
| MobiDBLite | 41 | 63 | 23 | - | – | |
| MobiDBLite | 41 | 73 | 33 | - | – | |
| Gene3D | 60 | 326 | 267 | 5.8E-55 | – | |
| ProSiteProfiles | 91 | 119 | 29 | 10.449 | ||
| CDD | 102 | 282 | 181 | 1.74477E-48 | – | |
| PANTHER | 109 | 507 | 399 | 1.8E-63 | – | |
| PANTHER | 109 | 507 | 399 | 1.8E-63 | – | |
| SMART | 110 | 336 | 227 | 1.1E-35 | ||
| Pfam | 115 | 311 | 197 | 4.3E-34 | ||
| ProSiteProfiles | 122 | 325 | 204 | 21.525 | ||
| SUPERFAMILY | 177 | 510 | 334 | 1.76E-50 | ||
| Gene3D | 367 | 534 | 168 | 2.8E-36 | – | |
| CDD | 370 | 499 | 130 | 1.54663E-38 | – | |
| ProSiteProfiles | 385 | 529 | 145 | 18.227 | ||
| Pfam | 392 | 490 | 99 | 2.7E-21 | ||
| SMART | 409 | 490 | 82 | 1.5E-22 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi3g1v0131000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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