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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0131100 |
Transcript ID | LotjaGi3g1v0131100.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Atp-dependent rna helicase; TAIR: AT1G12770.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q8W4E1|RH47_ARATH DEAD-box ATP-dependent RNA helicase 47, mitochondrial; TrEMBL-Plants: tr|I1MJG2|I1MJG2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0131100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:16354747..16360076) extracted from Lotus japonicus Gifu genome v1.2.
TCAAAAACCTTTAACAGATAAACCCCATAATTTTTTTCTTGGAACAAGCAGGTTCACACAGCAAAACAAAACAACTCTGA AATTCTGATGTTGAGCCGTTCCCAATTCCCTCAACTTTGAAGTCACCTGAAAGGTTCCAGAGCTTCCTAGCTCATGGCTA TTGGGTCTAGACTATGTTGGCAGCAGTAGCAACAAGTTTCCTTAATCTCTTCGCAAAAACAGAACCAAAAAGGTTTCAAC TTTTCACCCTCTTTAGCTTCTCCCAGAGTTTGATTATCTTTTTCTTTGTGGGTTTTCTTTGTTTTTCATTTGTGTTGTGT TTTTGTTTGAAAATGTTTTAGCAGCCATTAACAATATTGTCTTGTTTCATTTGGAGAATCAACAGGGTTTAAGGTTGCTC TTTTCTGTTGAATAAGATGCCAGCTTTGATATCAGCTAAGTTTTTTTCCCTTGTTGGAGGGTCATTCCCAATGAGAAGGG TTTTGGCCAATTCTAGGTTTGCTTGGTTTCACAGTAGTGTCCATTGTATGAGCAAGTTGGAACCCCATCATGGTTCTCTC ACTCTTTCTAGCATTGATGTTCAAAGTGAAGTTGACCCCAAGAACAGAACCAAATTGAATAAGCCTTATAAGGCATTGAG TTCCTCCTCTGAGTCCCTCAAGAACAAAGGAAAGCCCTTTGGTAATAATGAGAGGAAACCAGTTAGGGTTTTAGATAAAC AGCAAATAGAGTCTGCCCCTTTTGCTGCAGAGTCATTTTCGGAACTTGGCCTTCCGAATGTGTTGATTGACAGGCTGGAA AATGAGGGTTTCACCGTTCCAACAGAGGTTCAGTCTGCTGCAGTTCCTACCATTCTGAAGGACCATGATGTCATCATTCA GTCTTACACTGGTTCAGGGAAAACATTGGCTTATCTCCTTCCTATATTATCTGCTATCGGGCCACTAAGGAACAAAGTTC CTCAAGGCAGTGGTGAAGGTGGTGATTCTGGGAAGAAATTGGGAATTCAAGCACTGATTGTTGCTCCTTCTAGGGAGCTT GGAATGCAGATTGTGAGGGAATTTGAAAAGATACTAGGAATGGATAACAAGAAGGCGGTTCAGCAGCTAGTGGGAGGCGC GAATCGAACCCGGCAGGAAGAAGCTCTCAAGAAAAACAAACCTGCCATTGTTGTCGGGACTCCTGGTAGGATAGCTGAGC TCAGTGCAGCCGGGAAGCTTCACACCCATGGATGTCGTTTTTTAGTATTAGATGAAGTTGATGAACTCTTGTCCTTCAAT TTCCGGGAAAACATGCACCGGATAATAGAGCATGTAGGGAGAAGATCAGGTGCAGGTGCAGACCCAAACTCGAATGCTGA AAGGGCTGTGCGCCAGTTAATTATGGTTTCTGCAACTGTGCCATTTTCTGTTGTAAGAGCAGCTAGGAGCTGGGGTTGTG ACCCACTTCTTGTCCGAGCTAACAAAGTTGTCCCACTTGAAACCGTGTCTCCTGCTGAGCCTATCAAATTGTCAATATCT TCACCCAGCTCCAGTGCTAACTCATCCATGCAAACTCAGGCAGCAGTTGAGAGTCTACCTCCAGCGTTGAAGCACTATTA CTGCGTTGTTAGGTTGCAGCACAAGGTTGATACATTGAGAAGGTGTATTCATGCGCTGGATGCCAAATATGTGATAGCTT TCATGAACCATACTAAGCAGCTAAAGGATGTTGTTTTCAAGCTGGAGGCCCGTGGAATGACAGCCACAGAGTTACATGGG GATCTTGGGAAGCTTGCGAGGTCAACAACTCTGAAGAAATTCAAGAATGGTGAGGTGAGAGTTCTGGTGACAAATGAATT ATCTGCAAGGGGTCTGGATGTGGCAGAATGTGATCTTGTGGTTAATCTGGAATTACCTACGGATTCAATTCACTATGCTC ACCGGGCTGGCCGAACTGGTCGGCTTGGTAGGAATGGAACAGTGCTAACTATATGCGAAGAGCCTGAAGTTTTTGTTGTG AAGAAATTGCAGAAGCAGCTTGGAATACCAATACCATGTTGTGATATTACAGAGGGAAAGCTGGTTGTCACTGAAGAAGA GAAAGTACTAAGTCCTTCTTGAAGATGAGGTGTTACAATTTTGCAACTTTTTAGGTTGACAATGCCGTTTCCATGTTCCC TGTATTATTCTCCATTGAGGTTTCCTTTCTCTCTTTATATTTTTAATGGACCTGATGTTTTTTAATTTATTTATATGCAT CAAAGCTATATTTAGGGGATTGCTTCTTTACCTGTTTTACTAATTAACAGCTTGAGTACTCATTGAAAACATGCATTGTA GTTTACATTTGAAGTTGAATATAATAGGTATGTTCTGTCAAGGACTTGTATGTGCTTGCTAAATATTGCAGCTTATAGAA TTAATTATCACTTTTTATGATATTAAGGTTTCGATTGAATGTTGATGAGCAACTTAGGCGCAAATTACTTTGGAAGACAT GATTTCTATGAAATTAGTTTCCCTCCTTTCTATGGAAAACCCTTCTTAAAGTAAGAAAATTGCTCCTCTGGTGAATCCAA GATATGTTCCTTGAACGGAAAACTTCATTTTCCTAAGTGGAATTACTTTTCCTAACTCAACCTAGAAGATGGGCCTATAA TTATAAAGCTGGCCCAAATGATGTATCCTTTCTTGGATACTAACAAAGACGCATTACATCAGGAAGTGGAAAAGAGAAAG TAGATGAGGAAGACAGCATGCAAATATGGACTTGGTCTGTGCTGGGACATCAACTGTCACTGACACTAATTTGGCCGTAT CTCTAGTTAATGGAGTGTATAGTACTCTGTTAGGAATATATGATGTATTATACTATTTGGATTAGGAAGCAGTAGCTTGT TGTGTAAGCTGCTAGCCTTAGTTATAATTAGATCAATTGTGTACTGTGTCAATTACCAATAATCATAATAACAGAATTCA GTTAGATAGCTTTCTCTCTCTCCTCTCTCTCTTTTCTGCTTTGTTTCTGTTACTAGTCAATGTGGGACTTCTAACGCACC CCCTCACGCTTAGGGCTGGAAATCTGGAATGTGGAATGATATGGGTGGCCCAAATATGGGAGGTCTCTACAGCAAATGGA TCTAGGATAGACTCTGATACCATATTAGAATTAGGGAGGCCTAACTCAACCCAAAAGCTAGCTCAAGAGTCAAGAGTTGA GGGTTGCTCTACCCTTTATAAACACTTGTTTGACCATATCTCTAGTCAATGTGGACTTCTAACACCCACTAATCTCAGGG AGAGTTAAGAGACCCCATTTTAATTTCCTCATTGACAAGCTAAAACAAAGACTAGCCTCTTGGAAGTCTAGGTTGTTAAA ATAGGCCGGTAGTTGTCTTGGATTAATTCAGTTGCATCATCCATCCCAGTTTATAGTGGCTACCTAAATCTATGTGCAAC ACAATAGATGGTATAAAATGAAATTTCTTGTGGTCTGGAAAGGAATGTGATAGGAGCTGGAATTTAGTTTCCTGAAATCA ATGCACGCGAGCAAAGCAGCATGGTGGTTTGTCTTTCAAAGATACAAAGAGTATGAATATTGCTTTATGAGGCAAACTGA CTTGGAAAATTCTCAGCAGACCTGATAACTTCCTGGTGCAGATCCTTGCTAGTAAATACCTGTCCAAAGGGCTGCTAATG TTAACTAAAATAACTGAGGAGGTATCTTATGTTTGGACTAGTATAATTTGAGCTTTTTAGTACGTGATACTATGGTTTAG CTTGAGATTGCAACAAGGAGACTCGAGTCTTTGGTATGCAGAATGGTGGGATATGGGTCCTCCTTGTAACTTGATTCCTT TTGTGCATAAAATTGACACTGATAAGGTAAGTCAATGATGTCTGATAAGTGAGACGGTGGGTTTTTGACACCCTGCGCAC CATTTTGGCACAAGTTATATCCCACAGAAATACTTTGGCTGACCCGTCGTGCTTTTAGTATGAAGATGCTTGGGTGTGGA CTGAAATCAAATGGGGAGTATTCTTCAGCTTCGGCTTATACTTGGCTTAAGATGCAGGAACCTTCATCTTCATCTATTCT TGAAAGCACATGGGCGACCTTGTGGAAACAGAAAATTCCTGAAAAGGTAATTTTTTTTATTTGGCTCCTCTTGAATGACA GATTACTAACAAATTAGCATAGGTTCACCTGCTGACCTGCAATATTTTTTTTATCTTCTGCTTGTAAGTGATGTTCTCAC CTCATAGAATAGCCTTCAGTGTCTGAGAGATTGTACTCATTCAATCGAGATTTGGCTTAGATCAAGTTGCAACACGCTGT GATGGATACATGATGACGAGTGCAGATTCAGTGCGTTTTCTCATCACGCTGTGATGGATATGGCGTTGGAGAAATGATAT TCTTCTAGATCATCATCATCATTGGCCAATTAATGTGGTGTTAAAACTGTTATTAGCTAATCTTCAAGATCTGGAAATAT TATCTCTCAACAGACAGGCTCCAAATGCGAAGCCAAATTCAAAGCTGGTCTCCTCTACTGCAGAGGTGGGTAAAAATAAA TGCTGATTGTAGCTATATACAATCAACTTCCCTGATGAGCTGCGGAGGAGTGATCTGTGATGAAAATGATCCCTGGATTA TTGGTTTTTCTGGTTTTGAAGGCAATGGTGATGTTCTGCTTGCTGAGCTCTTTTGGGGGTGCAAGTCGACTTGAATTGGC TTGTGTAATGGGATGGCGCTAGGTTCTCTGCAAATATGATAACCATGAAGTAGTTGAAATGTTCCAACTTCAAAGGTCTG CAAACTTGATAACACATTTATGCAGTCTGCATCTCAGTTCCTGCATCGTGAGAAAATGCTAATTCTGGGTCATCACTTTT TGTCATGTGCAAGGAATTTGAGTTTCAAAATTGATAGCTGGTTTAAAATCTGCCTGAGGCAATGGAAGAGATTGGCTAGT TTTAAGCTGTCAGATTCTCATAAATGGTCTGTGCTGAAGCTTATGGGTTGAAACTTGGATTTGTTTTAACCTGAATTTGC TTTGCATTGGATGCACTTTCAATTTTGGATGTGTCAAATCATGTTTAGGAGTTCATGATGCATTGAGAATCAAAATTTAA TGTATACTTAAACAATGACTAGTTCACATTTAAATCAGAATAAACGGAATGTTTAAAGACTCAATAATCATATGAACTAG CAAAGGTGCTACTAATTCTGTGGTGTAGCAAATATCTAATGGATGTGGAAGAATTCATGATATACTTGCTTTTGTTTCAT TTCTTTTACTCTTCAATTCCTACATTTGTATAGTACTTCAAAAGTGTTCT
CDS sequence (LotjaGi3g1v0131100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCAGCTTTGATATCAGCTAAGTTTTTTTCCCTTGTTGGAGGGTCATTCCCAATGAGAAGGGTTTTGGCCAATTCTAG GTTTGCTTGGTTTCACAGTAGTGTCCATTGTATGAGCAAGTTGGAACCCCATCATGGTTCTCTCACTCTTTCTAGCATTG ATGTTCAAAGTGAAGTTGACCCCAAGAACAGAACCAAATTGAATAAGCCTTATAAGGCATTGAGTTCCTCCTCTGAGTCC CTCAAGAACAAAGGAAAGCCCTTTGGTAATAATGAGAGGAAACCAGTTAGGGTTTTAGATAAACAGCAAATAGAGTCTGC CCCTTTTGCTGCAGAGTCATTTTCGGAACTTGGCCTTCCGAATGTGTTGATTGACAGGCTGGAAAATGAGGGTTTCACCG TTCCAACAGAGGTTCAGTCTGCTGCAGTTCCTACCATTCTGAAGGACCATGATGTCATCATTCAGTCTTACACTGGTTCA GGGAAAACATTGGCTTATCTCCTTCCTATATTATCTGCTATCGGGCCACTAAGGAACAAAGTTCCTCAAGGCAGTGGTGA AGGTGGTGATTCTGGGAAGAAATTGGGAATTCAAGCACTGATTGTTGCTCCTTCTAGGGAGCTTGGAATGCAGATTGTGA GGGAATTTGAAAAGATACTAGGAATGGATAACAAGAAGGCGGTTCAGCAGCTAGTGGGAGGCGCGAATCGAACCCGGCAG GAAGAAGCTCTCAAGAAAAACAAACCTGCCATTGTTGTCGGGACTCCTGGTAGGATAGCTGAGCTCAGTGCAGCCGGGAA GCTTCACACCCATGGATGTCGTTTTTTAGTATTAGATGAAGTTGATGAACTCTTGTCCTTCAATTTCCGGGAAAACATGC ACCGGATAATAGAGCATGTAGGGAGAAGATCAGGTGCAGGTGCAGACCCAAACTCGAATGCTGAAAGGGCTGTGCGCCAG TTAATTATGGTTTCTGCAACTGTGCCATTTTCTGTTGTAAGAGCAGCTAGGAGCTGGGGTTGTGACCCACTTCTTGTCCG AGCTAACAAAGTTGTCCCACTTGAAACCGTGTCTCCTGCTGAGCCTATCAAATTGTCAATATCTTCACCCAGCTCCAGTG CTAACTCATCCATGCAAACTCAGGCAGCAGTTGAGAGTCTACCTCCAGCGTTGAAGCACTATTACTGCGTTGTTAGGTTG CAGCACAAGGTTGATACATTGAGAAGGTGTATTCATGCGCTGGATGCCAAATATGTGATAGCTTTCATGAACCATACTAA GCAGCTAAAGGATGTTGTTTTCAAGCTGGAGGCCCGTGGAATGACAGCCACAGAGTTACATGGGGATCTTGGGAAGCTTG CGAGGTCAACAACTCTGAAGAAATTCAAGAATGGTGAGGTGAGAGTTCTGGTGACAAATGAATTATCTGCAAGGGGTCTG GATGTGGCAGAATGTGATCTTGTGGTTAATCTGGAATTACCTACGGATTCAATTCACTATGCTCACCGGGCTGGCCGAAC TGGTCGGCTTGGTAGGAATGGAACAGTGCTAACTATATGCGAAGAGCCTGAAGTTTTTGTTGTGAAGAAATTGCAGAAGC AGCTTGGAATACCAATACCATGTTGTGATATTACAGAGGGAAAGCTGGTTGTCACTGAAGAAGAGAAAGTACTAAGTCCT TCTTGA
Protein sequence (LotjaGi3g1v0131100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPALISAKFFSLVGGSFPMRRVLANSRFAWFHSSVHCMSKLEPHHGSLTLSSIDVQSEVDPKNRTKLNKPYKALSSSSES LKNKGKPFGNNERKPVRVLDKQQIESAPFAAESFSELGLPNVLIDRLENEGFTVPTEVQSAAVPTILKDHDVIIQSYTGS GKTLAYLLPILSAIGPLRNKVPQGSGEGGDSGKKLGIQALIVAPSRELGMQIVREFEKILGMDNKKAVQQLVGGANRTRQ EEALKKNKPAIVVGTPGRIAELSAAGKLHTHGCRFLVLDEVDELLSFNFRENMHRIIEHVGRRSGAGADPNSNAERAVRQ LIMVSATVPFSVVRAARSWGCDPLLVRANKVVPLETVSPAEPIKLSISSPSSSANSSMQTQAAVESLPPALKHYYCVVRL QHKVDTLRRCIHALDAKYVIAFMNHTKQLKDVVFKLEARGMTATELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGL DVAECDLVVNLELPTDSIHYAHRAGRTGRLGRNGTVLTICEEPEVFVVKKLQKQLGIPIPCCDITEGKLVVTEEEKVLSP S
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 24 | 24 | - | – | |
Phobius | 1 | 2 | 2 | - | – | |
Phobius | 3 | 13 | 11 | - | – | |
Phobius | 14 | 24 | 11 | - | – | |
Phobius | 25 | 561 | 537 | - | – | |
MobiDBLite | 71 | 94 | 24 | - | – | |
MobiDBLite | 71 | 85 | 15 | - | – | |
Gene3D | 78 | 349 | 272 | 5.3E-62 | – | |
ProSiteProfiles | 112 | 140 | 29 | 10.785 | ||
CDD | 123 | 347 | 225 | 1.8687E-70 | – | |
PANTHER | 127 | 528 | 402 | 9.8E-76 | – | |
PANTHER | 127 | 528 | 402 | 9.8E-76 | – | |
SMART | 131 | 366 | 236 | 2.9E-43 | ||
Pfam | 136 | 332 | 197 | 1.8E-40 | ||
ProSiteProfiles | 143 | 346 | 204 | 24.008 | ||
SUPERFAMILY | 196 | 531 | 336 | 1.47E-52 | ||
Gene3D | 388 | 551 | 164 | 3.3E-35 | – | |
CDD | 391 | 520 | 130 | 3.28809E-40 | – | |
Pfam | 405 | 511 | 107 | 4.7E-20 | ||
ProSiteProfiles | 406 | 550 | 145 | 17.296 | ||
SMART | 430 | 511 | 82 | 1.4E-19 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi3g1v0131100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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