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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0131100 |
| Transcript ID | LotjaGi3g1v0131100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Atp-dependent rna helicase; TAIR: AT1G12770.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q8W4E1|RH47_ARATH DEAD-box ATP-dependent RNA helicase 47, mitochondrial; TrEMBL-Plants: tr|I1MJG2|I1MJG2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0131100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:16355163..16356854) extracted from Lotus japonicus Gifu genome v1.2.
ATGCCAGCTTTGATATCAGCTAAGTTTTTTTCCCTTGTTGGAGGGTCATTCCCAATGAGAAGGGTTTTGGCCAATTCTAG GTTTGCTTGGTTTCACAGTAGTGTCCATTGTATGAGCAAGTTGGAACCCCATCATGGTTCTCTCACTCTTTCTAGCATTG ATGTTCAAAGTGAAGTTGACCCCAAGAACAGAACCAAATTGAATAAGCCTTATAAGGCATTGAGTTCCTCCTCTGAGTCC CTCAAGAACAAAGGAAAGCCCTTTGGTAATAATGAGAGGAAACCAGTTAGGGTTTTAGATAAACAGCAAATAGAGTCTGC CCCTTTTGCTGCAGAGTCATTTTCGGAACTTGGCCTTCCGAATGTGTTGATTGACAGGCTGGAAAATGAGGGTTTCACCG TTCCAACAGAGGTTCAGTCTGCTGCAGTTCCTACCATTCTGAAGGACCATGATGTCATCATTCAGTCTTACACTGGTTCA GGGAAAACATTGGCTTATCTCCTTCCTATATTATCTGCTATCGGGCCACTAAGGAACAAAGTTCCTCAAGGCAGTGGTGA AGGTGGTGATTCTGGGAAGAAATTGGGAATTCAAGCACTGATTGTTGCTCCTTCTAGGGAGCTTGGAATGCAGATTGTGA GGGAATTTGAAAAGATACTAGGAATGGATAACAAGAAGGCGGTTCAGCAGCTAGTGGGAGGCGCGAATCGAACCCGGCAG GAAGAAGCTCTCAAGAAAAACAAACCTGCCATTGTTGTCGGGACTCCTGGTAGGATAGCTGAGCTCAGTGCAGCCGGGAA GCTTCACACCCATGGATGTCGTTTTTTAGTATTAGATGAAGTTGATGAACTCTTGTCCTTCAATTTCCGGGAAAACATGC ACCGGATAATAGAGCATGTAGGGAGAAGATCAGGTGCAGGTGCAGACCCAAACTCGAATGCTGAAAGGGCTGTGCGCCAG TTAATTATGGTTTCTGCAACTGTGCCATTTTCTGTTGTAAGAGCAGCTAGGAGCTGGGGTTGTGACCCACTTCTTGTCCG AGCTAACAAAGTTGTCCCACTTGAAACCGTGTCTCCTGCTGAGCCTATCAAATTGTCAATATCTTCACCCAGCTCCAGTG CTAACTCATCCATGCAAACTCAGGCAGCAGTTGAGAGTCTACCTCCAGCGTTGAAGCACTATTACTGCGTTGTTAGGTTG CAGCACAAGGTTGATACATTGAGAAGGTGTATTCATGCGCTGGATGCCAAATATGTGATAGCTTTCATGAACCATACTAA GCAGCTAAAGGATGTTGTTTTCAAGCTGGAGGCCCGTGGAATGACAGCCACAGAGTTACATGGGGATCTTGGGAAGCTTG CGAGGTCAACAACTCTGAAGAAATTCAAGAATGGTGAGGTGAGAGTTCTGGTGACAAATGAATTATCTGCAAGGGGTCTG GATGTGGCAGAATGTGATCTTGTGGTTAATCTGGAATTACCTACGGATTCAATTCACTATGCTCACCGGGCTGGCCGAAC TGGTCGGCTTGGTAGGAATGGAACAGTGCTAACTATATGCGAAGAGCCTGAAGTTTTTGTTGTGAAGAAATTGCAGAAGC AGCTTGGAATACCAATACCATGTTGTGATATTACAGAGGGAAAGCTGGTTGTCACTGAAGAAGAGAAAGTACTAAGTCCT TCTTGAAGATGA
CDS sequence (LotjaGi3g1v0131100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCAGCTTTGATATCAGCTAAGTTTTTTTCCCTTGTTGGAGGGTCATTCCCAATGAGAAGGGTTTTGGCCAATTCTAG GTTTGCTTGGTTTCACAGTAGTGTCCATTGTATGAGCAAGTTGGAACCCCATCATGGTTCTCTCACTCTTTCTAGCATTG ATGTTCAAAGTGAAGTTGACCCCAAGAACAGAACCAAATTGAATAAGCCTTATAAGGCATTGAGTTCCTCCTCTGAGTCC CTCAAGAACAAAGGAAAGCCCTTTGGTAATAATGAGAGGAAACCAGTTAGGGTTTTAGATAAACAGCAAATAGAGTCTGC CCCTTTTGCTGCAGAGTCATTTTCGGAACTTGGCCTTCCGAATGTGTTGATTGACAGGCTGGAAAATGAGGGTTTCACCG TTCCAACAGAGGTTCAGTCTGCTGCAGTTCCTACCATTCTGAAGGACCATGATGTCATCATTCAGTCTTACACTGGTTCA GGGAAAACATTGGCTTATCTCCTTCCTATATTATCTGCTATCGGGCCACTAAGGAACAAAGTTCCTCAAGGCAGTGGTGA AGGTGGTGATTCTGGGAAGAAATTGGGAATTCAAGCACTGATTGTTGCTCCTTCTAGGGAGCTTGGAATGCAGATTGTGA GGGAATTTGAAAAGATACTAGGAATGGATAACAAGAAGGCGGTTCAGCAGCTAGTGGGAGGCGCGAATCGAACCCGGCAG GAAGAAGCTCTCAAGAAAAACAAACCTGCCATTGTTGTCGGGACTCCTGGTAGGATAGCTGAGCTCAGTGCAGCCGGGAA GCTTCACACCCATGGATGTCGTTTTTTAGTATTAGATGAAGTTGATGAACTCTTGTCCTTCAATTTCCGGGAAAACATGC ACCGGATAATAGAGCATGTAGGGAGAAGATCAGGTGCAGGTGCAGACCCAAACTCGAATGCTGAAAGGGCTGTGCGCCAG TTAATTATGGTTTCTGCAACTGTGCCATTTTCTGTTGTAAGAGCAGCTAGGAGCTGGGGTTGTGACCCACTTCTTGTCCG AGCTAACAAAGTTGTCCCACTTGAAACCGTGTCTCCTGCTGAGCCTATCAAATTGTCAATATCTTCACCCAGCTCCAGTG CTAACTCATCCATGCAAACTCAGGCAGCAGTTGAGAGTCTACCTCCAGCGTTGAAGCACTATTACTGCGTTGTTAGGTTG CAGCACAAGGTTGATACATTGAGAAGGTGTATTCATGCGCTGGATGCCAAATATGTGATAGCTTTCATGAACCATACTAA GCAGCTAAAGGATGTTGTTTTCAAGCTGGAGGCCCGTGGAATGACAGCCACAGAGTTACATGGGGATCTTGGGAAGCTTG CGAGGTCAACAACTCTGAAGAAATTCAAGAATGGTGAGGTGAGAGTTCTGGTGACAAATGAATTATCTGCAAGGGGTCTG GATGTGGCAGAATGTGATCTTGTGGTTAATCTGGAATTACCTACGGATTCAATTCACTATGCTCACCGGGCTGGCCGAAC TGGTCGGCTTGGTAGGAATGGAACAGTGCTAACTATATGCGAAGAGCCTGAAGTTTTTGTTGTGAAGAAATTGCAGAAGC AGCTTGGAATACCAATACCATGTTGTGATATTACAGAGGGAAAGCTGGTTGTCACTGAAGAAGAGAAAGTACTAAGTCCT TCTTGA
Protein sequence (LotjaGi3g1v0131100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPALISAKFFSLVGGSFPMRRVLANSRFAWFHSSVHCMSKLEPHHGSLTLSSIDVQSEVDPKNRTKLNKPYKALSSSSES LKNKGKPFGNNERKPVRVLDKQQIESAPFAAESFSELGLPNVLIDRLENEGFTVPTEVQSAAVPTILKDHDVIIQSYTGS GKTLAYLLPILSAIGPLRNKVPQGSGEGGDSGKKLGIQALIVAPSRELGMQIVREFEKILGMDNKKAVQQLVGGANRTRQ EEALKKNKPAIVVGTPGRIAELSAAGKLHTHGCRFLVLDEVDELLSFNFRENMHRIIEHVGRRSGAGADPNSNAERAVRQ LIMVSATVPFSVVRAARSWGCDPLLVRANKVVPLETVSPAEPIKLSISSPSSSANSSMQTQAAVESLPPALKHYYCVVRL QHKVDTLRRCIHALDAKYVIAFMNHTKQLKDVVFKLEARGMTATELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGL DVAECDLVVNLELPTDSIHYAHRAGRTGRLGRNGTVLTICEEPEVFVVKKLQKQLGIPIPCCDITEGKLVVTEEEKVLSP S
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 2 | 2 | - | – | |
| Phobius | 3 | 13 | 11 | - | – | |
| Phobius | 14 | 24 | 11 | - | – | |
| Phobius | 25 | 561 | 537 | - | – | |
| MobiDBLite | 71 | 94 | 24 | - | – | |
| MobiDBLite | 71 | 85 | 15 | - | – | |
| Gene3D | 78 | 349 | 272 | 5.3E-62 | – | |
| ProSiteProfiles | 112 | 140 | 29 | 10.785 | ||
| CDD | 123 | 347 | 225 | 1.8687E-70 | – | |
| PANTHER | 127 | 528 | 402 | 9.8E-76 | – | |
| PANTHER | 127 | 528 | 402 | 9.8E-76 | – | |
| SMART | 131 | 366 | 236 | 2.9E-43 | ||
| Pfam | 136 | 332 | 197 | 1.8E-40 | ||
| ProSiteProfiles | 143 | 346 | 204 | 24.008 | ||
| SUPERFAMILY | 196 | 531 | 336 | 1.47E-52 | ||
| Gene3D | 388 | 551 | 164 | 3.3E-35 | – | |
| CDD | 391 | 520 | 130 | 3.28809E-40 | – | |
| Pfam | 405 | 511 | 107 | 4.7E-20 | ||
| ProSiteProfiles | 406 | 550 | 145 | 17.296 | ||
| SMART | 430 | 511 | 82 | 1.4E-19 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi3g1v0131100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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