Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0132600 |
| Transcript ID | LotjaGi3g1v0132600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb family transcription factor APL; TAIR: AT1G79430.2 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q9SAK5|APL_ARATH Myb family transcription factor APL; TrEMBL-Plants: tr|E5L8F7|E5L8F7_LOTJA IPN2; Found in the gene: LotjaGi3g1v0132600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:16605614..16608311) extracted from Lotus japonicus Gifu genome v1.2.
GTTAGAGAGAGAAGAGGGAGTAAGGTGTCTTTGGACAAAGGAAGGTCTGCATGTTGGAATAGGGTAGCTTTATTTTTTAT TTTTTGAAAAAGAAATTTCATATTAATATTGAATACATTCTTTTAAGTAAGGCTTAGCTCCTTCCCACATGCTTTATACC TGAAGAGGGTAACCAAAGCCATTCACCACCCCCTTCTCTTCTTCAAAACGCACCCTATTCTCCTCTATTTTGCATCCGCA TTTGTTCTTGAATCTCTTTGGTATTCCTCAGAGCCTCTCATCAGAGAGAAAGAGAACAAAAAAAAAGGTGAGAGATGGAG AGAATGTTCCCTCCCAAGAAGCCCTCAACTATGAATTCCCATGACAGACCCATGTGTGTTCAAGGAGACTCAGGTCTTGT TCTCACAACAGACCCAAAACCTCGCCTCCGCTGGACCGTCGAGCTCCATGAACGCTTTGTTGATGCTGTCACTCAGCTCG GAGGCCCTGATAGTACTACTCTACTCTTAATTTATCCTTGTCCTTCCATATAACCGACTTCACTTATTATTGGGATAAGG CTTTTGTTACTGTTATCTGTATATGGATCTCATATATGTCTCTATTGAATTTGCAGAGGCTACTCCTAAAACCATCATGA GGGTGATGGGTGTGAAGGGTCTCACCCTTTACCACCTTAAGAGCCACCTTCAGGTTTGAACACAAACCATGTTAACTAAT TTCATGCTACCTTCTTTTGCTTTTTGTTTAGATCACTTTTTTATATGAAACTGATGGTGATTTCCTCCCTTTATCTTTAA TTTTTTTGTTTGTTGATTTATTTGTTGTCTTCTTCATTCCTCAGAAATTCAGGCTTGGCAAGCAGCCCCACAAGGAATTC AATGATCACTCGATTAAGGATGGTATGAGAGGTGACTCTTCTTTCTAGGGTTCTCTTGATTTTTTTACCCTTTTGAACTT TTGTGATCTTTACACTGCATGATGGTTCTTTTGCATATTGACAAAATCTTTTTGCACTGGCAGCTTCGGCTTTAGAACTG CAACGAAACACTGCCTCCTCTTCTGCCATGATCGGCCGCAACATGAATGAGTATGCAACTTTACTTCTTCCATATATATC TAATATCTTCTTTATTGGAAAACCAACATGTACAAGAATTTGAAGAGAACATTTCGCTCCTTCTTCATCTAGCCCAATTC TTACCTTTGATTCTTTATTTTGTAATTAGGATGCAAATTGAGGTGCAGAGAAGACTGCATGAACAGCTTGAGGTAAACAC ACAACCCTTGATGAAAGTGAAATTAACTACACGAAGGATTCTTAGACATCCAAACAGTGCAGATAGTCAGTCACACACTG CGACATCTAAAATTTCTTTTGATTTTTATTTTTCTCTTCTTATCTTCCCTTGGGCTTAACTGTCTTAAATGCATTTTGTC TTATCAAAATAATATATTCATTACGTCTCTTTCTTCTCCTTCTCTCACCTTGAGTGTCTGTTAGGTGTTTGTTGCAGTAT GCGGATAACTACAAATCATTTTCCTTAAAATTATATTTTTTTAAAGTCTATGCTATCGACATGCATGTTCTTCATGGGTT TAGGTGTGTTTGGCAGGTCCAGAAGCATCTTCAGCTAAGGATTGAGGCTCAAGGGAAATACATGCAGAGCATATTGGAGA AGGCATATCAAACACTTGCAGGTGAAAACATGGCCTCTGCAGCCACCAACTTGAAGGGTATAGGACCTCAAACCATCCCT GACATGGGAATCATGAAAGAGTTTGGTTCCCCTCTTGGTTTCTCTTTTCAAGATCTTGACCTTTATGGAGGTGGTGGTGG TGACCAGCTTGAGCTTCAGCAAAACATGGAGAAACCACCCCTTGATGGGTTCATGCCAATGAATCATGAGAACCTGTGTC TGGGGAAAAAGAGGCCTAACCCTTATAGTGGTAACAATGGGAAGAGCCCTTTGATGTGGAGTGATGATCTCAGGCTTCAA GATTTGGGATCATGCCTTCAAGATGATCCTTTCAAAGGTGATCATCATCACCAGATTCAGATTGCACCACCATCATTGGA TAGAGGCACTGAAATGGATCCAATGTCAGAGATCTATGACTCAAAGCCTGAAGAGAAGAAATTTGATGCATCAATGAAAC TTGAAAGGCCATCACCAAGAAGAGCACCACTTGGAGAAAGGATGAGTCCTATGATCACTACTGGTACCATGGCTCAAGGT AGAAGCTCACCATTTGGCTGAGATTAATCTTAATTAATTAGTTTTGAGAATCATTAATTTTCTCATGTGATGTGTAATTT GACATGATGTGAAACTCTCTTAAGTATGATACCTAGGGTTTTGAATTTGGTCTTTGGTTGGGAATCTGCAGTTCATATGA GGGTTATTTGACTTATTTCCTCCTCTCAAAGTACTGTTATATGGTATAATGCCTTTGCATGGCAACCCAATGTCTTATTC TAACTAATGTAATTAAAGCACGTATGCTTGTGCTTAATATTGTGAGCATTCTCACTCTTTTACATCTACCATTATGATCT CACATGATTATTTTGGCAGGGTACTATTCTACCACTAGACCACTGGCTTAACAAAAAAAACATGATTATTTTGGAATTCA TATTTTATGCAGCTTCTACCTTCTGTTCAGCAGTTAATAAAAATCATAGCTATTTGTG
CDS sequence (LotjaGi3g1v0132600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGAGAATGTTCCCTCCCAAGAAGCCCTCAACTATGAATTCCCATGACAGACCCATGTGTGTTCAAGGAGACTCAGG TCTTGTTCTCACAACAGACCCAAAACCTCGCCTCCGCTGGACCGTCGAGCTCCATGAACGCTTTGTTGATGCTGTCACTC AGCTCGGAGGCCCTGATAAGGCTACTCCTAAAACCATCATGAGGGTGATGGGTGTGAAGGGTCTCACCCTTTACCACCTT AAGAGCCACCTTCAGAAATTCAGGCTTGGCAAGCAGCCCCACAAGGAATTCAATGATCACTCGATTAAGGATGGTATGAG AGCTTCGGCTTTAGAACTGCAACGAAACACTGCCTCCTCTTCTGCCATGATCGGCCGCAACATGAATGAGATGCAAATTG AGGTGCAGAGAAGACTGCATGAACAGCTTGAGGTCCAGAAGCATCTTCAGCTAAGGATTGAGGCTCAAGGGAAATACATG CAGAGCATATTGGAGAAGGCATATCAAACACTTGCAGGTGAAAACATGGCCTCTGCAGCCACCAACTTGAAGGGTATAGG ACCTCAAACCATCCCTGACATGGGAATCATGAAAGAGTTTGGTTCCCCTCTTGGTTTCTCTTTTCAAGATCTTGACCTTT ATGGAGGTGGTGGTGGTGACCAGCTTGAGCTTCAGCAAAACATGGAGAAACCACCCCTTGATGGGTTCATGCCAATGAAT CATGAGAACCTGTGTCTGGGGAAAAAGAGGCCTAACCCTTATAGTGGTAACAATGGGAAGAGCCCTTTGATGTGGAGTGA TGATCTCAGGCTTCAAGATTTGGGATCATGCCTTCAAGATGATCCTTTCAAAGGTGATCATCATCACCAGATTCAGATTG CACCACCATCATTGGATAGAGGCACTGAAATGGATCCAATGTCAGAGATCTATGACTCAAAGCCTGAAGAGAAGAAATTT GATGCATCAATGAAACTTGAAAGGCCATCACCAAGAAGAGCACCACTTGGAGAAAGGATGAGTCCTATGATCACTACTGG TACCATGGCTCAAGGTAGAAGCTCACCATTTGGCTGA
Protein sequence (LotjaGi3g1v0132600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MERMFPPKKPSTMNSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHL KSHLQKFRLGKQPHKEFNDHSIKDGMRASALELQRNTASSSAMIGRNMNEMQIEVQRRLHEQLEVQKHLQLRIEAQGKYM QSILEKAYQTLAGENMASAATNLKGIGPQTIPDMGIMKEFGSPLGFSFQDLDLYGGGGGDQLELQQNMEKPPLDGFMPMN HENLCLGKKRPNPYSGNNGKSPLMWSDDLRLQDLGSCLQDDPFKGDHHHQIQIAPPSLDRGTEMDPMSEIYDSKPEEKKF DASMKLERPSPRRAPLGERMSPMITTGTMAQGRSSPFG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 20 | 20 | - | – | |
| PANTHER | 14 | 357 | 344 | 6.3E-126 | – | |
| PANTHER | 14 | 357 | 344 | 6.3E-126 | – | |
| Gene3D | 31 | 92 | 62 | 2.9E-26 | – | |
| ProSiteProfiles | 32 | 92 | 61 | 12.347 | ||
| SUPERFAMILY | 34 | 90 | 57 | 1.63E-16 | ||
| TIGRFAM | 35 | 90 | 56 | 1.1E-23 | ||
| Pfam | 38 | 86 | 49 | 1.6E-6 | ||
| Pfam | 131 | 170 | 40 | 5.4E-21 | ||
| MobiDBLite | 310 | 358 | 49 | - | – | |
| MobiDBLite | 310 | 334 | 25 | - | – | |
| MobiDBLite | 344 | 358 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi3g1v0132600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…