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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0134400 |
| Transcript ID | LotjaGi3g1v0134400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent RNA helicase DeaD; TAIR: AT1G16280.1 RNA helicase 36; Swiss-Prot: sp|Q9SA27|RH36_ARATH DEAD-box ATP-dependent RNA helicase 36; TrEMBL-Plants: tr|K7ME11|K7ME11_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0134400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:17103814..17109767) extracted from Lotus japonicus Gifu genome v1.2.
GTTACACTAGTTCACATGATGTCGTGCACTAAGTTACACTAGTTTAGGTGGCACGTCATTAGCAATGTTATAATGGTGAC ATGAAGAAAGAGAGATGCATTGAACTGGAAATAAAAAAACAGACTTTTTAAAAACATATCAGGTACAGTCGAAGATTAGT TCCTAGTGAGTACAAAATGCATGATTCTGGGTCCTAAGCTTTTATCCACAGAGTTTGATAATTGTGGAAAAAAGTGCTTT GAATCAGGGTGATTTAGAGTTTACCATAAGGTTTAGTGAATACTTTTCAAAAGGAAGTAGTATGTTTTTTCTGTGTGATA GGTGTTGTTTTGAGTGTTTGATGATAGGTGTTCTTTTGAGTGTTTGATGTGAGACTGTAAAGTACAATTGATAATAGTGA AGAAAATCCTCAAATTAGAAATGAGGATTGAATGTAACCTTCAATGGGTGAAGGTGAGCTAAGATACATCATTGTGTAAA TTTCCTCTAACTCTTACTCTTTAATTACTTTACGCATTACTACATCTTGATTTCATTGTGTTGATTTTCTTGAATAATTC TAGTTATTAATTTATGCTTCAGATACTTAATATTTTTGAGTTTGTAAATTTTAAATTGATTATATTCTTACAAACCTAAT TCCCTCTATTAGTTTGCTATCTTAGTGTGTTCACATAATTAAATCTTTTTTTTTTTAAACCTGTTAAATCAATCTATGAA AAGTATGAAGTTATAAATTAATTTAAACATAGGGCATTGCTCTGGTACCCTCCTAAAATGAGAGGATTCAACACCTTACA GTTCACTATTGACACGATAAAAGACTTAAGTTGCAAATTTTAAAAATTTATAACAAATATAACCATGACCAATGAAAGTA AAGAAGAGTATGAAACCCTTCTATTTTGAAATGGTATTAAAGAAATTGTCTCAATTTAAATAGTTTACATAGTACAAAAT AAAATTTTAATAAAACTAAATAGGAATTTCCATTATAATTGCGAATATGTCCTTGACCTTGTTCGATTTCTTGTGTGCAT GTTTTTTCCCTTATTCGTGCGGCAAGCAAAACCAGAACTCACAGAATGGAGCAGCCACAACTCCTAGTGGGTGAAAACTT TCCGCTCTTCAAACCCTCCAAAATCCCCGCCGCAACCGCTTCCGCCGCCGCCAATGAAAACCCTAACTCCGCCACCACAA ACAACAGCAACAAGCAAAACCTCGACTCCGCCCCTGACGAACCGGCCACCGACGACGCCGCCACGTTCGCCGATCTCGGA CTTGCAGACTGGGCGGTGAAAACGTGCAAGGAGCTAGGGATGCGGGCGCCGCGGCGCGTGCAGCAGCAGTGCATCCCGAG GGTCCTGGAAGGCCGGCACGTGCTCGGCATCGACGAGACCGGGAGTGGCAAAACGGCGGCGTTCGCTCTACCGATCCTGC ACCGGCTCTCCGAGCACCCGTTTGGCGTGTGCGCTCTGGTGGTGACGCCCACGCGCGAGCTTGCTTTCCAGCTCGCGGAA CAGTTTCGCGCGTTCGGGTCCTCCCTCCGCCTCCGCATTGCCGTGGTGGTTGGTGGCATGGACATGCTCAAACAGACGAA GGAGCTTGTCGCGAGGCCTCACATTGTTATCGCCACCCCTGGGAGGATGAAGTTCTTGCTCCAGGATAATCCTGATATTC CTCCTGTTTTCTCTAGGACTAAGGTAATGATTTTGATGGATTTTGTGGTTTCAACTTTTAATAGTGTCTTGGCCTCTTTA TTTATCTGCGAATGCGGTGGAATTTGATTTTGGTATGAATAGTAATTGACATTTTGGTTATTTGGTGATAGTTTTGAATG CAATGGAGAAACCTTATTGCTAGAAGCATGTGAAGGGAATTAAGAAAATGTGATTTGGATAGATGGTGATCGTATGGAAA CGTTGTGTAGGTCGGTTCGACGAGTTTTTATCTGTTAGGGATTTAATTGGAAGAACGAGTTCTATTGGTGTTTAAAAATA GAGTTAGGACTATAACAAATTCAGAAAATTATATTACAGGTTTACAACATCCTGTATCATCGTTAGGACTGAAATGACAT GTGCAACTTTGGCTGAAGTTTCTATAAGATGATTTGGTTAGTGCTGTTTATAGGTTCTCAGATGTTATCGCTCCCATCTC TCTTTAAAATTTTTCAAGTAGGTGGCTTAAAGGGTGAGTAGGAAGTTTAAATGAAGTCTTTAAGGGTTTGCTATACATTT TCAAATTTGAGCATCTATTGAGGTGAACTTCAAAAGAGATACTAGAGTATTGTCTTAGGTGATTTGGACATATGTAGAGA AGACGCATAAAAGCACCTGGAAGGGGGATTTTGACCAATTGGAGGGTGTGACTTCAATTGTTAAGAATTAAGAGACTTTG AGATAAATTGTTTATCTTTAAACTTAATACATGACAAGGCACTATGTTGTTATTTGATTTATGTGGCTGACTCCTCCTAG TGGGTAAAAGCTTGCCGGTTATTGTTCTTGCTCCACCAGCTATATTCAGCTTTATGGGTGTGTACTGTTGACCCCTTTTT CCTGGTCAAGGTTAACATAGATTTCTTGTTGTAAATGCTAAACCTTTTGATTATTTTTATATTGAAAGAAAAGAGAGGGA GTATTACTTATTGTATGCTTTAACTTTATGTCTTCATAATTCAATGATTTTATATTTGACCCATGCTTCTGCAGTTCCTT GTCTTAGATGAAGCAGATCGAGTCTTGGAAGTTGGTTTTCAAGAGGAATTGAAAATTCTCTTTCAGTGCTTACCAGAAAA TCGACAAAACCTGTTCTTTTCTGCAACAACGACAAGTAATCTGCAAAAGTTGCGTGACCGTTTTCAAGATAAGATGTTTG TCTATGAGGCTTATGAAGGTTTTAAAACAGTTGAAACACTTAAGCAACAGGTTATATTCATCCCTAAAAAGGTGAAAGAC GTATATTTGGTGCATATGTTGTCTAAAATGGAAGAAATGGGTATTCGATCTGCCATTGTATTTATCTCCACATGCAGGTA TCTTTTTACATTACTATATTTGTATCTTTCATAACCAATTTTGGTTATCTATAATTATATATTCTGGTTTGTTATTCATC TTTCTTCTCTAAGGTCCATAACTCCTTTTCTTGGGGGTGCTATAAGAATAAGATCATGCTGTCACACATATGAGAACAGA TTACTAGGATGTGATAAAATCAATGAGACTGAGACAAAGATCCTAAAAGGATAAGATCCCAAAAATTTGGTGACTCAATT ACCTAAAATAACATAAATTGTCCTAACTGATTACGTGTTCTCTTGCTCAACATATTTTGTAGATGTTCTAACATTTCTAA AATTGCAGAGATTGTCATCGTTTAAGTTTAATGCTGGACGTGCTTGATCAAGAAGCTGCAGCTCTATATTCATTTAGATC ACAGGCTCAGAGGATTGAAGCGCTTCATCAGTTTAAATCAGGACAAGTTTCTATACTATTAGCAACTGATGTTGCCAGTC GCGGTTTGGATATTCCTACAGTTGACCTAGTCATCAATTATGATGTTCCAAGGTTATTTTTCTTAACCAATTTCTGTAAT TTTTAGTTTACTGTTAAAGAATTTGATGTTGGATTTTAATTCATCTGCAGGTTTCCACGAGATTATATTCATCGTGTTGG TCGTACCGCAAGAGCTGGCAGAGGAGGACTTGCATGGAGTCTTGTTACCGAGGTGAACAATTACAGATCTCTCTCTGTTT TTGTATGAGTTTTCATGCATCATATATGAAAGATTTTTTTGGTAATATATTGATTTTTTTTCTTGTTATTCGACTGACCA CTACAGTATACATCTGTACCACTGCGAATCTGGAATATTACTTCACTGTCCACCTTAGATGATGGATCCCAAACAATCTC CTTTTGTTTAATTAGCTTTTTTCTTTTATTTACTTTCTTCCTTTTTCTTGGTGCATATGCACATGTGTTTTGGAGAGGGC AGTGGTGGATCTATAAATTTCTGGTAGTGGTTTAAACAAACATAACAAGTAAATTTTCAACTGTATGGATAATAAAGATG AAATTTTCCACCATCCCATGAGAAACCAGAGAGCATTTGGCTTGATTGAAAAAGAGGAACAACACCAATCCCATCTTACT CTTCCAAAACGGGCTGAAGGTATAAGAAAATGTTTCATTTTTCCCACATACATTCACATCACCAACCAAAATATGATTGA GAGTGTAGGGGGAGTTCTGGATGTAGGAAGGAACTGTGAGGAGAGAAAGAAGGAACTTCTCTGAGGTATTAAGTCCCGTT AGCCCATGGCTTTTAATTTGGAACTTCGATTTTGACTTGCTTTTTTATTCTTTCTTTTGTCCAACCTTTCTAATGTACTG CTAGGTCTGAGACTTCTGTTTTGGTCTCCACATGTTTTTAGTTACAAAACCTTGAGATTATGACCTTCTAATGCAGTCCA TCTTCTACCGGTCTTGTCAAATGCAATATTGTTACCATCCTTTCTAAAATAGGTTCTACTCGAATTTTTATTTAATGGAT TAATTACTAATCTTCTCATATCTTGTGTGACCAATTATCTATTTAATATTCTCATCTCTGCAAAATTGAGTTTATTTCTT TTTTATCACATTTATTTTTGTGGGGTACAATTTTCAATTAAACTTGAGCAGTGTTTTATTTATCATAAATAGCACTGAAA TAAAATAGAATATCAAGAGTTAATATTGGATCTTAAGGTCCAAGTTACTCATAAAAGTGCTGTTCATAACACGTCTTTCT GCTATAGAATTACATATAGTTTAGTTAGTATTTATCAATTAGGAATTATTAACACTGTTGCAAGTCCTAACCTAAAGGCA CCCTTGTATATTCATGTTGTCTTGCTATTCGCAGAGGTAGTGTCTTGGGTTATTTCTTTTATGATGAGGGTATTTCATAT ATTAAATGTGATCATTTTGAAGATTCAGATATTTGTATTGCATTCATTTCCTTATTAAATCACCATTCAAATTTGGCTTT TGCAGAGTGATGTTGATCTCGTTCGTGAGATAGAGACTCTTCTTGGAAGGCAACTTGAAATGCTTGAATACAAAGAAAAT GAGGTGCTTCCTCTCATCAAAAAGGTATGTTTTTGTGGGTTTTCCTACTTTTCGGTCAAGTGATTTAATTTGATTTGTGT GTCTTCACTCTTCAGGAATCATGATTGTGGTTTTTTTGCTTTTTCTTTAATTATGAGTTATGTAAAGCTTATTTAATAAA TTTCCAATCTATTTTTACACTTTGATGCAGGTTTTCAGTGCTAAGAATGCGGCAGGAATGAGGATGGTGGATGATGGCTT TGAGGAGAAAGCTGTAGAACGGAAAAAACAGAAACGGAAAATGCTAGCAGAGAAAGGGTTGTTAAAGAGCAGAAGTAAAA AGAGAAAAGGAATAAAGAATTTGCAGAGAAAGGGAAAAAACAGAAAAAAGATGAAGTGGAAGCATTAGCTGATACAGCGT CACTGAAAAAAAAGAGTAAGAAGAAAGTAAATTAGCATATCTGAGGAATCACTTCTTAGAGAACGGAAAGGATAATCGAA GAATACAGCTTTAAGAGGCAAAAGTCGATGCTGTATGAGGAGAGATACCATTATAAAGCGTAGGAGCTGTAGCATAGTGT TTTTGGGAAGTTATAACTATTGCACACGGATTAAGATCCTCTCAATTGTAGATTCTCTTAAGTTTTCTTAAGTTGAAATT TTGTGTTGATCTCTCTTTTCATATGTATTAAATAGGTGAATTCTTTGAATATTTATGAAGAAAAAAATAGACTCAATGTT TTTGATATTAACAATTCACTTTAGAGTATCCTAATCGGCTTGCACACAATCTGGAGATGCTTACATTTGTTGTGGGAATT TTTGGGCATTAATCAAATGGAAACAAGTGGCTCG
CDS sequence (LotjaGi3g1v0134400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGCAGCCACAACTCCTAGTGGGTGAAAACTTTCCGCTCTTCAAACCCTCCAAAATCCCCGCCGCAACCGCTTCCGC CGCCGCCAATGAAAACCCTAACTCCGCCACCACAAACAACAGCAACAAGCAAAACCTCGACTCCGCCCCTGACGAACCGG CCACCGACGACGCCGCCACGTTCGCCGATCTCGGACTTGCAGACTGGGCGGTGAAAACGTGCAAGGAGCTAGGGATGCGG GCGCCGCGGCGCGTGCAGCAGCAGTGCATCCCGAGGGTCCTGGAAGGCCGGCACGTGCTCGGCATCGACGAGACCGGGAG TGGCAAAACGGCGGCGTTCGCTCTACCGATCCTGCACCGGCTCTCCGAGCACCCGTTTGGCGTGTGCGCTCTGGTGGTGA CGCCCACGCGCGAGCTTGCTTTCCAGCTCGCGGAACAGTTTCGCGCGTTCGGGTCCTCCCTCCGCCTCCGCATTGCCGTG GTGGTTGGTGGCATGGACATGCTCAAACAGACGAAGGAGCTTGTCGCGAGGCCTCACATTGTTATCGCCACCCCTGGGAG GATGAAGTTCTTGCTCCAGGATAATCCTGATATTCCTCCTGTTTTCTCTAGGACTAAGTTCCTTGTCTTAGATGAAGCAG ATCGAGTCTTGGAAGTTGGTTTTCAAGAGGAATTGAAAATTCTCTTTCAGTGCTTACCAGAAAATCGACAAAACCTGTTC TTTTCTGCAACAACGACAAGTAATCTGCAAAAGTTGCGTGACCGTTTTCAAGATAAGATGTTTGTCTATGAGGCTTATGA AGGTTTTAAAACAGTTGAAACACTTAAGCAACAGGTTATATTCATCCCTAAAAAGGTGAAAGACGTATATTTGGTGCATA TGTTGTCTAAAATGGAAGAAATGGGTATTCGATCTGCCATTGTATTTATCTCCACATGCAGAGATTGTCATCGTTTAAGT TTAATGCTGGACGTGCTTGATCAAGAAGCTGCAGCTCTATATTCATTTAGATCACAGGCTCAGAGGATTGAAGCGCTTCA TCAGTTTAAATCAGGACAAGTTTCTATACTATTAGCAACTGATGTTGCCAGTCGCGGTTTGGATATTCCTACAGTTGACC TAGTCATCAATTATGATGTTCCAAGGTTTCCACGAGATTATATTCATCGTGTTGGTCGTACCGCAAGAGCTGGCAGAGGA GGACTTGCATGGAGTCTTGTTACCGAGAGTGATGTTGATCTCGTTCGTGAGATAGAGACTCTTCTTGGAAGGCAACTTGA AATGCTTGAATACAAAGAAAATGAGGTGCTTCCTCTCATCAAAAAGGTTTTCAGTGCTAAGAATGCGGCAGGAATGAGGA TGGTGGATGATGGCTTTGAGGAGAAAGCTGTAGAACGGAAAAAACAGAAACGGAAAATGCTAGCAGAGAAAGGGTTGTTA AAGAGCAGAAGTAAAAAGAGAAAAGGAATAAAGAATTTGCAGAGAAAGGGAAAAAACAGAAAAAAGATGAAGTGGAAGCA TTAG
Protein sequence (LotjaGi3g1v0134400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEQPQLLVGENFPLFKPSKIPAATASAAANENPNSATTNNSNKQNLDSAPDEPATDDAATFADLGLADWAVKTCKELGMR APRRVQQQCIPRVLEGRHVLGIDETGSGKTAAFALPILHRLSEHPFGVCALVVTPTRELAFQLAEQFRAFGSSLRLRIAV VVGGMDMLKQTKELVARPHIVIATPGRMKFLLQDNPDIPPVFSRTKFLVLDEADRVLEVGFQEELKILFQCLPENRQNLF FSATTTSNLQKLRDRFQDKMFVYEAYEGFKTVETLKQQVIFIPKKVKDVYLVHMLSKMEEMGIRSAIVFISTCRDCHRLS LMLDVLDQEAAALYSFRSQAQRIEALHQFKSGQVSILLATDVASRGLDIPTVDLVINYDVPRFPRDYIHRVGRTARAGRG GLAWSLVTESDVDLVREIETLLGRQLEMLEYKENEVLPLIKKVFSAKNAAGMRMVDDGFEEKAVERKKQKRKMLAEKGLL KSRSKKRKGIKNLQRKGKNRKKMKWKH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 23 | 55 | 33 | - | – | |
| MobiDBLite | 25 | 49 | 25 | - | – | |
| Gene3D | 48 | 264 | 217 | 6.7E-67 | – | |
| PANTHER | 57 | 298 | 242 | 7.5E-124 | – | |
| PANTHER | 57 | 298 | 242 | 7.5E-124 | – | |
| ProSiteProfiles | 59 | 87 | 29 | 8.506 | ||
| CDD | 61 | 264 | 204 | 1.29646E-110 | – | |
| SMART | 78 | 278 | 201 | 6.2E-51 | ||
| Pfam | 84 | 252 | 169 | 8.6E-40 | ||
| ProSiteProfiles | 90 | 263 | 174 | 28.931 | ||
| SUPERFAMILY | 127 | 418 | 292 | 4.42E-64 | ||
| ProSitePatterns | 209 | 217 | 9 | - | ||
| Gene3D | 270 | 506 | 237 | 6.6E-47 | – | |
| CDD | 275 | 407 | 133 | 1.40556E-53 | – | |
| ProSiteProfiles | 290 | 437 | 148 | 22.006 | ||
| Pfam | 293 | 398 | 106 | 2.7E-26 | ||
| PANTHER | 302 | 478 | 177 | 7.5E-124 | – | |
| PANTHER | 302 | 478 | 177 | 7.5E-124 | – | |
| SMART | 317 | 398 | 82 | 1.4E-28 | ||
| MobiDBLite | 466 | 480 | 15 | - | – | |
| MobiDBLite | 466 | 507 | 42 | - | – | |
| MobiDBLite | 481 | 507 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi3g1v0134400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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