Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0140500 |
| Transcript ID | LotjaGi3g1v0140500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing family protein; TAIR: AT1G79080.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|A3KPF8|PP131_ARATH Pentatricopeptide repeat-containing protein At1g79080, chloroplastic; TrEMBL-Plants: tr|A0A0R0G5Z0|A0A0R0G5Z0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0140500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:18572795..18575261) extracted from Lotus japonicus Gifu genome v1.2.
CGTGAAGTGAAACCCTTTTGGTTTAGGACAACACAGAAAAGTAAAGGATAACACACAAAACGTACGTGGCTGAAGCCAAG CTGTTGAATTCACATCACAGAAGCCTTGCCCCTGTTCCAAAATTCCTCACTGTCATCTCTCTCATTCATCCTCGACAAGG ATCACCATGAAGCCAGTTCTACAGTTTCCAAGTAGAACCAACCCAGAAACTTGAACTTCTTTGCTACATGCAAAGTCTAG CAAGGATTCACCATCACCACTTCACTTCTTCCTGCTTCAATCATGGCTACACTGCTGAATACAGTGTCACCAGCAGCAAA TTTATCAGCAAAGACAAGAAGAACAAACAGTTCTTGTTTCCTGTATTCCCAGGTTCTAAATCTTCGCACTTTTTCACTTA ACAAGGGTTTTTCTAGGGTTTTAGCTTCAGCCCAGATTTCTATTTCCCCAAAAGATTCAATTTTTACTCTGCCCAATTGG AGGGTAGGGAAGAATGACCAAAAGAGTAAAGAAGTGAGGCTCAATGATGCATTTCTTCATTTAGAGTATATGGTGGGTAA GGGCCAAAAGCCTGATGTAGCTCAAGCAACTCAGCTCTTGTATGATCTTTGCAAGTCTAATAAAGCTAGGAAAGCTGTTA GAGTTATGGAGATGATTGTAGGTTCTGGTATTATACCAGATGCTGCTTGTTACACACACTTGGTTAATTTTTTGTGTAGG AGGGGGAATATTGGTTATGCAATGCAGTTGGTTGAGAAGGTGGAGGAGCATGGCTTTCAAACTGGTACTGTTACTTATAA CACTCTAGTTAAAGGGCTTTGCTCTCATGGGAAATTAAATCAGAGTTTGCAGCTTTTAGACCGGTTGACGAAGAAGGGTC TGAAACCAAATGTATTTACATATTCTTTCCTGCTTGAAGGTGCTTACAAAGAAAGGGGTGTAGATGAAGCCATGAAGCTT CTAGATGATATTATTGCCAGGGGTGGGGAGCCTAATTTAGTTAGTTACAATGTATTGTTGACCGGGTTGTGCAAGGAAGG TAGAACGGAAGATGCTATTGAGCTTTTCAGGGATTTGCCTGCTAAAGGGTTCAGTCCTAGTGTTGTGAGTTATAACATTT TACTGAGGAGTTTGTGCTATGAAGGGCGGTGGGAGGAAGCGAATGGACTTTTAGCAGAGATGGATGAAGAGGACCTGTCT CCCTCTGTTGTTACTTACAACATATTGATTACTTCCCTTTCTCTTCACGGAAGAACAGAACAGGCTTTCGAAGTTTTAGA TGAAATGACAAGGAGTGGGTTCAATGTGACTGCTACTAGCTATAATCCAATAATTGCTCGCCTCTGCAAGGAAGGGAAGG TTGATCTTGTGGTTCAGTGTCTAGACCAAATGATTTGTCGGCGTTATAGTCCTAATGAAGGAACATACAATGCTATTGCA ATGCTTTGTGAGCAAGGGAAGGTGCAGGAGGCTTTCTTTATATTCCAAAGCTTGGGTAATAAACAAAACTGCCCTATGCA TGATTATTGCAAAAATGTGATTTCAATGCTGTGTAGGAAAGGAAACACATATCCAGCCTTTCAGATGTTATATGAAATGA CCAAGTGTGGATTTACTCCAGATTCCTACACTTATTCATCATTGGTTAGAGGAATGTGTAGGGAGGGAATGCTAGATGAG GCTCTTGAGATATTCAGGATTTTGGAAGAAAATGACTACATGCCTGATATTGATAATTACAATGCACTCATACTTGGATT TTGCAAATATCAAAGAACAGACTTGTCAATAGAGATATTTCAGAGGATGGTTAACAAAGGATGTGTGCCTAATGAGATAA CCTATACCATTCTTGTTGAAGGCCTCGCTTTCGAAAACGAATTGGATATAGCAGCCGGCCTGATGAAAGAGTTATACATG AGAGAGGTTTTGAGTCGAAGTACGGTTGATAGACTTTCTATGCAATATGACCTCAAGGAATTTACAGCATAGAGACACAC ACTCTCAAAGTACATAACTACAACAGAAAGTTAGTAGGGCTATTACTTGTTTTCAGATATGAACTGAGTTTTCCCAGCTT GAGTACTTAATTACCTATATATTGTTGATTGGTCAGTGTAATAAGTTCCTGAATGCTGAAATTTTGGTTAAATATAATGT TTAGAGATGAGTAATGAAAAGATTCATGCAGAGGATTTAATGCTGATTGCACTCTCTTCCATGCATTATATTTTATACTG CTTTTGTGAATTGAGGCATCTTGGTTGTTTAAATGATTTGTAGTATCCATTTGCTTCTTGGCTATATCCATCTTGGTTTC CTTTGATCCTGAGATATATAGCAGTGACTTTACCACTCCTTTGCCAGTTTAAATAGACAAGTGCATTCAGTCTGCTCCAA TTGATACACGAAGATCATTGTACAAGGTAAGTACCTACCTCATCTTATTTACTTGCTGACATTTACA
CDS sequence (LotjaGi3g1v0140500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTACACTGCTGAATACAGTGTCACCAGCAGCAAATTTATCAGCAAAGACAAGAAGAACAAACAGTTCTTGTTTCCT GTATTCCCAGGTTCTAAATCTTCGCACTTTTTCACTTAACAAGGGTTTTTCTAGGGTTTTAGCTTCAGCCCAGATTTCTA TTTCCCCAAAAGATTCAATTTTTACTCTGCCCAATTGGAGGGTAGGGAAGAATGACCAAAAGAGTAAAGAAGTGAGGCTC AATGATGCATTTCTTCATTTAGAGTATATGGTGGGTAAGGGCCAAAAGCCTGATGTAGCTCAAGCAACTCAGCTCTTGTA TGATCTTTGCAAGTCTAATAAAGCTAGGAAAGCTGTTAGAGTTATGGAGATGATTGTAGGTTCTGGTATTATACCAGATG CTGCTTGTTACACACACTTGGTTAATTTTTTGTGTAGGAGGGGGAATATTGGTTATGCAATGCAGTTGGTTGAGAAGGTG GAGGAGCATGGCTTTCAAACTGGTACTGTTACTTATAACACTCTAGTTAAAGGGCTTTGCTCTCATGGGAAATTAAATCA GAGTTTGCAGCTTTTAGACCGGTTGACGAAGAAGGGTCTGAAACCAAATGTATTTACATATTCTTTCCTGCTTGAAGGTG CTTACAAAGAAAGGGGTGTAGATGAAGCCATGAAGCTTCTAGATGATATTATTGCCAGGGGTGGGGAGCCTAATTTAGTT AGTTACAATGTATTGTTGACCGGGTTGTGCAAGGAAGGTAGAACGGAAGATGCTATTGAGCTTTTCAGGGATTTGCCTGC TAAAGGGTTCAGTCCTAGTGTTGTGAGTTATAACATTTTACTGAGGAGTTTGTGCTATGAAGGGCGGTGGGAGGAAGCGA ATGGACTTTTAGCAGAGATGGATGAAGAGGACCTGTCTCCCTCTGTTGTTACTTACAACATATTGATTACTTCCCTTTCT CTTCACGGAAGAACAGAACAGGCTTTCGAAGTTTTAGATGAAATGACAAGGAGTGGGTTCAATGTGACTGCTACTAGCTA TAATCCAATAATTGCTCGCCTCTGCAAGGAAGGGAAGGTTGATCTTGTGGTTCAGTGTCTAGACCAAATGATTTGTCGGC GTTATAGTCCTAATGAAGGAACATACAATGCTATTGCAATGCTTTGTGAGCAAGGGAAGGTGCAGGAGGCTTTCTTTATA TTCCAAAGCTTGGGTAATAAACAAAACTGCCCTATGCATGATTATTGCAAAAATGTGATTTCAATGCTGTGTAGGAAAGG AAACACATATCCAGCCTTTCAGATGTTATATGAAATGACCAAGTGTGGATTTACTCCAGATTCCTACACTTATTCATCAT TGGTTAGAGGAATGTGTAGGGAGGGAATGCTAGATGAGGCTCTTGAGATATTCAGGATTTTGGAAGAAAATGACTACATG CCTGATATTGATAATTACAATGCACTCATACTTGGATTTTGCAAATATCAAAGAACAGACTTGTCAATAGAGATATTTCA GAGGATGGTTAACAAAGGATGTGTGCCTAATGAGATAACCTATACCATTCTTGTTGAAGGCCTCGCTTTCGAAAACGAAT TGGATATAGCAGCCGGCCTGATGAAAGAGTTATACATGAGAGAGGTTTTGAGTCGAAGTACGGTTGATAGACTTTCTATG CAATATGACCTCAAGGAATTTACAGCATAG
Protein sequence (LotjaGi3g1v0140500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATLLNTVSPAANLSAKTRRTNSSCFLYSQVLNLRTFSLNKGFSRVLASAQISISPKDSIFTLPNWRVGKNDQKSKEVRL NDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKV EEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLV SYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLS LHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAFFI FQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYM PDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREVLSRSTVDRLSM QYDLKEFTA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 67 | 160 | 94 | 6.5E-13 | ||
| PANTHER | 80 | 186 | 107 | 3.2E-151 | – | |
| SUPERFAMILY | 84 | 274 | 191 | 3.14E-7 | – | |
| ProSiteProfiles | 98 | 132 | 35 | 7.892 | ||
| ProSiteProfiles | 133 | 167 | 35 | 9.328 | ||
| Pfam | 136 | 165 | 30 | 0.18 | ||
| PANTHER | 154 | 341 | 188 | 3.2E-151 | – | |
| Gene3D | 161 | 231 | 71 | 1.6E-17 | ||
| ProSiteProfiles | 168 | 202 | 35 | 12.408 | ||
| Pfam | 169 | 213 | 45 | 5.9E-13 | ||
| TIGRFAM | 170 | 204 | 35 | 2.4E-7 | ||
| ProSiteProfiles | 203 | 237 | 35 | 9.788 | ||
| Gene3D | 232 | 301 | 70 | 5.7E-21 | ||
| Pfam | 237 | 285 | 49 | 1.1E-15 | ||
| ProSiteProfiles | 238 | 272 | 35 | 13.515 | ||
| PANTHER | 240 | 427 | 188 | 3.2E-151 | – | |
| TIGRFAM | 240 | 274 | 35 | 3.0E-9 | ||
| ProSiteProfiles | 273 | 307 | 35 | 12.014 | ||
| TIGRFAM | 275 | 308 | 34 | 7.3E-8 | ||
| Gene3D | 302 | 370 | 69 | 2.3E-16 | ||
| Pfam | 304 | 336 | 33 | 1.7E-9 | ||
| ProSiteProfiles | 308 | 342 | 35 | 11.564 | ||
| TIGRFAM | 310 | 343 | 34 | 9.1E-8 | ||
| ProSiteProfiles | 343 | 377 | 35 | 9.799 | ||
| PANTHER | 344 | 544 | 201 | 3.2E-151 | – | |
| Pfam | 345 | 384 | 40 | 2.3E-7 | ||
| TIGRFAM | 346 | 379 | 34 | 2.4E-6 | ||
| Gene3D | 383 | 566 | 184 | 5.5E-36 | ||
| ProSiteProfiles | 412 | 446 | 35 | 7.673 | ||
| Pfam | 443 | 472 | 30 | 2.2E-10 | ||
| ProSiteProfiles | 447 | 481 | 35 | 12.945 | ||
| TIGRFAM | 449 | 482 | 34 | 3.6E-7 | ||
| Pfam | 481 | 529 | 49 | 7.9E-12 | ||
| ProSiteProfiles | 482 | 516 | 35 | 11.86 | ||
| TIGRFAM | 486 | 518 | 33 | 1.1E-7 | ||
| ProSiteProfiles | 517 | 551 | 35 | 7.081 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0140500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…