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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0143000 |
| Transcript ID | LotjaGi3g1v0143000.1 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT3G48810.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9M302|PP270_ARATH Pentatricopeptide repeat-containing protein At3g48810; TrEMBL-Plants: tr|A0A1J7G482|A0A1J7G482_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0143000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:18980019..18984752) extracted from Lotus japonicus Gifu genome v1.2.
GTGATTTGACAACTCTATATGGTAACTTCTTTTTTATTAATCCTAAAAAAATTATTTTCTTCTTCTTTTAATCAAAATTT CCTCACCTCGAAGTGCTCTGTCTCTCAGTCACTCCACTCTGCCTCCATCTCCCAGTCTCTCTTCAATCTCACTCCCCTGC CTAGCCAAATCGAAACCCTAATCCCCAAATTCACATTGAAGGTTCAATTTTTGCTTATTTTTTGGATCTTGCATTCGCAT TTGTGTTTGGCTCACCCTTTTGATCGAAGATTGAATTCACCTCAGCTTCTTCAGTATAAAGTTTCAAAATTTAATCTTCA TTGGAAGATAATCATGTATTTAAGAGATGGGTGTTCGTTATTGTTGAAATTGCGCAAGCCTTCAATCCCATTTGTGCTCA ACACCAACCCAATTTTCAATTTTGAGAAACCCCAGATGCAAAATTCTCCTGTTCCAGAGTCTCAGGTGGTGAAAGTGTTG AAACATGAGCAAGATATTGTGTTAGCACTTGAATATTTCAAATCTGTGGCCAATTTTGGAGCATTCAAACACACTCATTT GACATACCATGTTATGATTGAGAAGCTTGGAAGGAGCTCTGAAATTGATGGGGTTCAATATCTTTTGCAACAGATGAAGT TGGAAGAGATAGCTTGCTCTGAAGAGTTGTTTATAGTTGTGATGAATTCATATAGGAGAGCTGGGTTGGCTGATCAAGCT TTGAAGATGTTTTATAGGATCAGGGAGTTTGGGTGTAAGCCTACAGTGAAGATATACAATCACCTTTTGGATGCCTTGCT TGGTGAGAACAGGTTTCAGATGATTAGTCCTGTTTATAACAACTTGAAGGGGGAAGGGTTGGAGCCAAATGTGTTTACAT ATAACATTCTTCTCAAGGCTCTGTGTAAGAATGGAAAGGTGGACGGTGCGCGCAAGTTGCTTGAAGAAATGCCGAATAAG GGTTGTACTCCGGATGATGTGAGCTACACGACGATAATATCTTCCATGTGTAAATTTGGTCAAGTGGAGAAAGCAAAGGA GATAGCTATGAGGTTTACACCTGTAGTGCCTGTTTATAATGCTTTGATCAATGGATTATGTAAAGAGTGCAAGGTTAAGG AGGCATTTGATTTGATGAATGATATGGTGGGTAAGGGTGTTGACCCTAATGTTGTCAGTTACTCTACTATTATTAGTTGC CTTTCTGATATGGGGAACATTGACTTGTCTCTTGCAGTTTTTGCCCAAATGCTTATGAGAGGATGCAGCCCCAATATTCA TACATTTTCTTCCTTGATAAAAGGTCATTTCTTGGGAGGGAGACCCGGTGATGCTCTTGGCTTGTGGAATATTATGATTC GGGAGGGAGTTAAGCCCAATGTTGTCTCATACAACACTCTCATATATGGTTTTTGCTCCAATGGGAGTATGACTGAGGCA ATATCTATTTGGAATCAGATGGAGAAAAATTTTTGCCATCCAAATGTGACCACATATAGCACTCTTATAAATGGGCTTGC GAAATCAGGGAACTTGTTCGGTGCTTTGGATATATGGAACAAGATGATTAATTGTGGCTGCTGTCCTAATGTTGTGGCAT ACACCTGCATGGTGGATGTCCTTTGTCAGATGTCAATGTTTGACCAAGCTTATCGTCTTATTGATAATATGGCTTCTGAG GGTTGTCCTCCAACTGTTGTTACATTTAACACATTTATCAAAGGCTTGTGTGGTGGTGGAAGAGTTCAATGGGCAATGCA TGTGCTTGATCAGATGGAGAAATATGAGTGTGTGCCTAATATCAGAACATATAATGAATTGTTGGATGGTTTGTTTAGAA TGAACAGATTGGGAGAAGCTTGTGGACTTATAAGGGAGATGGAAGAAAGGAAAGTGGGGCTAAATTCTGTCACTTACAAC ACTCTCATGAATGGATTTTCTTGTCTTGGGATGCAAGAAAGGGTTTTGCAGCTTTTGGGGAAAATGACAGTAAATGGAGT AAAGCCTGATGCCATTACAGTTAATATAATTATTACCGTATACTGTAAGTTGGGTAAGGTTAGAACTGCGATCCAGCTTC TTGATACAATTACTGCAGGAAAGGAATTGTGTCCAGATATAATAGTGCATACTAGTCTTTTGTGGGGCATCTGTAATTGG TTAGGCATTGAAGAGGCAATTCTGCATCTTCAGAAAATGTTAAGCAGAGGAATCTTTCCCAATTTTATCACTTGGAATGT GTTAGTTCGAGGCTTCTTTAACAGCTTGGGTCATATGGGACCAATCCGCATCTTGGATGATATTTTAGGAAAGGGATAGT ATGCAATTTCAAACGTCCTGAAAGGTAGCTCTGTGCGAGAAAACCAGCTTTTTGAGCCAAACCAAAAACTGGTTCAGGAC TCCAGGTACAGTTTTTTTTTTATCCAAACCTAATCTTCTTCCCCTAGTTGACTCACCCATGAAAACACTTCACCTTTGTC TCTCCAGGCTCCCTTAAATAGCTGAATTGCAACTATATAATCCCAAATTGTGAGACTCAAATTCTAATTCATTCATTCTC TCAATTCGAACCTAGTCTTGGCTCGCCCTCTCAATCACAAACCTAATTGCGACTTGTTCTTTGTGAATCTCTCAGACTCT CTGTTCATCTTAATCTTGGTCAAAAGACTGTGAGGAACCATTGTCTTCACTGTGTTCATGAATCTTCATGTTAGCTTGTG AATCGCGATTCTATGTTCGCAAAGCTGTGACTCATATTTCATCTTTCACTAGTCTAAACACAGCTCTCTTCGAAGCTTCA ACAACTTTCTTTGTGTTGAGACCACGTTCTATTTTGAGACCAAGATTGATTTCTGGGTTTGCTTTGTTACTCTCTCTACT TTTATTGTTATTTGGGTTTTCTCCGATCTTGGGAATAGAACGTTACCTGTAACCGCTGCTTTTGTGTCCATGCAGGTAGA GTGCATTGCTCATTCTGTTTGATTTCGCGTGCTCGGTTGCTCCTGTTGTTTCATATTGAAGGTTTGATTTGTTTATTTTT TGGATCTTGTATACTGATTTATGTATTGCTCCATTCATTTTCCAGGATAGGAAAACATCTTGCTTTTGTTGGTTATATTG TTTCTGATGCTCATGTGGCATTGTGAACTGAATTCTAATATTCAGGTTCAAATATTAAACCATTTTTGAGGAGAAAATGA AGTGCATTAGCACACTGAAGTAACCATTGACATAATTCAGTTGATTATATGGAGTTTACCCTGCTGGAATTAAAAAGAAA CCACTAATGCATGAACTCAGCATCATATTCTTCCTTCAAGTGAATTTTGTGATTCTTTATTTCTTTTGTGAAGAATTTCA ACCCACATATGGCTTGCCAAAGTGGATACTTATTTTAAAACATTGCTACTGAATGCAAGTATGTGACATCTTCTTAAAAA GGGTGATCAATATGTGCATTTTAAAAGGTTTATGAAGTTTGTATGATTATTGATGGTAAAAATGATAGTACAACAGTTCA ATAACTTGTTTAGAAAACAATTCAATAGAACACAAACTTACATTTGCCCCGACAGACAGTTTTTCCTTCTCTGTTTTCAC CTTTGGAATTCATTAATGTACATTTGCATTGATGCAACAGTTTTTCAGACATGCTTTAACTTGTTTAAAGTTTAAACAAA CCAACAATAAATGTTTACCAAACTTGGCATTGTTCTTGAGTTTTACTGTGGCGTTTCCATGCTTTTGCAGCTTTGCACCA TACTGTGATCTATTCACATCCTGCTTCAGAGTAATGTAAATCTTATTTTTCATATAGATGTACTGTTGGTCATGTATAGT CATCTGCGCATGTTAGGTACTCTGTTTGTTGTATTTCGTTCTTCAATTAGAGTTACCAGCTTGATTAACAGATCCACAAA TAATTTGGCTGACTGAGCATCTATGTTGTAGGTTAATGCTCCAAAGAAAAAGGTTTGAAAGCAAACAATCCTGTAGAAGC ATTAGTTTATGGAACAATGGCACCTGTGGATGTCCAGAAAGCTTTAGAGGAATTATTTTGAAATTTCTTTGCTAGATAGT GTGATGGAAGATACAGAAGACAAGAAAAACATAGTTAAGTCTTGTGTTAATGGCATGAGAAACAAGGTCAGTTTTTCCTC ATAATATAAGAACTCCATATTTCTTAAAAGTTAACTGAGTGATAGCTAATCCTGCCTTAACTGGACAAGAGTACAGGATT GGCATATTTTGTAAGTCCTGCTGCTACTTCGACAGTCTTGTGTTTGGATGGTCACCATGAAAATTGAAAACAGTGGAGTA TCCCATGCCTTCGAACCTCACACTCCTCCACCCCAACAAGATCTCGCATAGGCCTTCTCTCTGGCCAAGCAAGAAGCCCC ACTACGACAAAGACCTCTCTCGCGTGGACCACTAGGACAAATGCCCGGTCCCGGTGCCCTCTCTGGAATTGTGCTTCCGC TAGGAACGAAGTCGCCCCAGATATGAGACATCGAGAAGGAAGTCAATGACACCCAGCTCATTGTGCAAGCTACAGATTCT CAGGGTGTGACTCTCACAGTGAATGCTTTAAGATTAGGTATATATTTTGACTTTTAATTCTTTTTAATCAGCAGTTTGAT TGGTTGGGTGATTGAGTTTCATTCCACTGGAAATTTCTGAGATTACAAAGGAAGGATCTTTGGAATTAACTTTTTCTCCG ATTTCTACTGTGTA
CDS sequence (LotjaGi3g1v0143000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTATGAGAGGATGCAGCCCCAATATTCATACATTTTCTTCCTTGATAAAAGGTCATTTCTTGGGAGGGAGACCCGG TGATGCTCTTGGCTTGTGGAATATTATGATTCGGGAGGGAGTTAAGCCCAATGTTGTCTCATACAACACTCTCATATATG GTTTTTGCTCCAATGGGAGTATGACTGAGGCAATATCTATTTGGAATCAGATGGAGAAAAATTTTTGCCATCCAAATGTG ACCACATATAGCACTCTTATAAATGGGCTTGCGAAATCAGGGAACTTGTTCGGTGCTTTGGATATATGGAACAAGATGAT TAATTGTGGCTGCTGTCCTAATGTTGTGGCATACACCTGCATGGTGGATGTCCTTTGTCAGATGTCAATGTTTGACCAAG CTTATCGTCTTATTGATAATATGGCTTCTGAGGGTTGTCCTCCAACTGTTGTTACATTTAACACATTTATCAAAGGCTTG TGTGGTGGTGGAAGAGTTCAATGGGCAATGCATGTGCTTGATCAGATGGAGAAATATGAGTGTGTGCCTAATATCAGAAC ATATAATGAATTGTTGGATGGTTTGTTTAGAATGAACAGATTGGGAGAAGCTTGTGGACTTATAAGGGAGATGGAAGAAA GGAAAGTGGGGCTAAATTCTGTCACTTACAACACTCTCATGAATGGATTTTCTTGTCTTGGGATGCAAGAAAGGGTTTTG CAGCTTTTGGGGAAAATGACAGTAAATGGAGTAAAGCCTGATGCCATTACAGTTAATATAATTATTACCGTATACTGTAA GTTGGGTAAGGTTAGAACTGCGATCCAGCTTCTTGATACAATTACTGCAGGAAAGGAATTGTGTCCAGATATAATAGTGC ATACTAGTCTTTTGTGGGGCATCTGTAATTGGTTAGGCATTGAAGAGGCAATTCTGCATCTTCAGAAAATGTTAAGCAGA GGAATCTTTCCCAATTTTATCACTTGGAATGTGTTAGTTCGAGGCTTCTTTAACAGCTTGGGTCATATGGGACCAATCCG CATCTTGGATGATATTTTAGGAAAGGGATAG
Protein sequence (LotjaGi3g1v0143000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLMRGCSPNIHTFSSLIKGHFLGGRPGDALGLWNIMIREGVKPNVVSYNTLIYGFCSNGSMTEAISIWNQMEKNFCHPNV TTYSTLINGLAKSGNLFGALDIWNKMINCGCCPNVVAYTCMVDVLCQMSMFDQAYRLIDNMASEGCPPTVVTFNTFIKGL CGGGRVQWAMHVLDQMEKYECVPNIRTYNELLDGLFRMNRLGEACGLIREMEERKVGLNSVTYNTLMNGFSCLGMQERVL QLLGKMTVNGVKPDAITVNIIITVYCKLGKVRTAIQLLDTITAGKELCPDIIVHTSLLWGICNWLGIEEAILHLQKMLSR GIFPNFITWNVLVRGFFNSLGHMGPIRILDDILGKG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 71 | 71 | 8.7E-20 | ||
| PANTHER | 3 | 57 | 55 | 2.2E-98 | – | |
| ProSiteProfiles | 9 | 43 | 35 | 10.709 | ||
| TIGRFAM | 11 | 45 | 35 | 2.6E-6 | ||
| Pfam | 12 | 41 | 30 | 0.0011 | ||
| PANTHER | 40 | 189 | 150 | 2.2E-98 | – | |
| Pfam | 43 | 92 | 50 | 2.2E-18 | ||
| ProSiteProfiles | 44 | 78 | 35 | 12.134 | ||
| TIGRFAM | 46 | 80 | 35 | 1.5E-10 | ||
| Gene3D | 72 | 142 | 71 | 2.8E-20 | ||
| ProSiteProfiles | 79 | 113 | 35 | 12.003 | ||
| TIGRFAM | 82 | 115 | 34 | 3.0E-10 | ||
| Pfam | 113 | 161 | 49 | 2.1E-15 | ||
| ProSiteProfiles | 114 | 148 | 35 | 11.696 | ||
| TIGRFAM | 116 | 150 | 35 | 3.6E-7 | ||
| Gene3D | 143 | 214 | 72 | 4.3E-21 | ||
| PANTHER | 148 | 336 | 189 | 2.2E-98 | – | |
| ProSiteProfiles | 149 | 183 | 35 | 11.005 | ||
| TIGRFAM | 151 | 185 | 35 | 9.4E-9 | ||
| Pfam | 183 | 230 | 48 | 5.8E-12 | ||
| ProSiteProfiles | 184 | 218 | 35 | 10.063 | ||
| TIGRFAM | 187 | 219 | 33 | 8.4E-6 | ||
| Gene3D | 215 | 281 | 67 | 3.6E-15 | ||
| ProSiteProfiles | 219 | 253 | 35 | 11.279 | ||
| TIGRFAM | 221 | 255 | 35 | 3.3E-6 | ||
| Pfam | 249 | 279 | 31 | 2.0E-8 | ||
| ProSiteProfiles | 254 | 289 | 36 | 7.914 | ||
| TIGRFAM | 256 | 280 | 25 | 0.0023 | ||
| Gene3D | 282 | 349 | 68 | 9.0E-7 | ||
| ProSiteProfiles | 290 | 324 | 35 | 7.717 | ||
| ProSiteProfiles | 325 | 356 | 32 | 6.237 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0143000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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