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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0143000 |
| Transcript ID | LotjaGi3g1v0143000.5 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT3G48810.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9M302|PP270_ARATH Pentatricopeptide repeat-containing protein At3g48810; TrEMBL-Plants: tr|A0A1J7G482|A0A1J7G482_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0143000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:18980133..18984882) extracted from Lotus japonicus Gifu genome v1.2.
CACTCTGCCTCCATCTCCCAGTCTCTCTTCAATCTCACTCCCCTGCCTAGCCAAATCGAAACCCTAATCCCCAAATTCAC ATTGAAGGTTCAATTTTTGCTTATTTTTTGGATCTTGCATTCGCATTTGTGTTTGGCTCACCCTTTTGATCGAAGATTGA ATTCACCTCAGCTTCTTCAGTATAAAGTTTCAAAATTTAATCTTCATTGGAAGATAATCATGTATTTAAGAGATGGGTGT TCGTTATTGTTGAAATTGCGCAAGCCTTCAATCCCATTTGTGCTCAACACCAACCCAATTTTCAATTTTGAGAAACCCCA GATGCAAAATTCTCCTGTTCCAGAGTCTCAGGTGGTGAAAGTGTTGAAACATGAGCAAGATATTGTGTTAGCACTTGAAT ATTTCAAATCTGTGGCCAATTTTGGAGCATTCAAACACACTCATTTGACATACCATGTTATGATTGAGAAGCTTGGAAGG AGCTCTGAAATTGATGGGGTTCAATATCTTTTGCAACAGATGAAGTTGGAAGAGATAGCTTGCTCTGAAGAGTTGTTTAT AGTTGTGATGAATTCATATAGGAGAGCTGGGTTGGCTGATCAAGCTTTGAAGATGTTTTATAGGATCAGGGAGTTTGGGT GTAAGCCTACAGTGAAGATATACAATCACCTTTTGGATGCCTTGCTTGGTGAGAACAGGTTTCAGATGATTAGTCCTGTT TATAACAACTTGAAGGGGGAAGGGTTGGAGCCAAATGTGTTTACATATAACATTCTTCTCAAGGCTCTGTGTAAGAATGG AAAGGTGGACGGTGCGCGCAAGTTGCTTGAAGAAATGCCGAATAAGGGTTGTACTCCGGATGATGTGAGCTACACGACGA TAATATCTTCCATGTGTAAATTTGGTCAAGTGGAGAAAGCAAAGGAGATAGCTATGAGGTTTACACCTGTAGTGCCTGTT TATAATGCTTTGATCAATGGATTATGTAAAGAGTGCAAGGTTAAGGAGGCATTTGATTTGATGAATGATATGGTGGGTAA GGGTGTTGACCCTAATGTTGTCAGTTACTCTACTATTATTAGTTGCCTTTCTGATATGGGGAACATTGACTTGTCTCTTG CAGTTTTTGCCCAAATGCTTATGAGAGGATGCAGCCCCAATATTCATACATTTTCTTCCTTGATAAAAGGTCATTTCTTG GGAGGGAGACCCGGTGATGCTCTTGGCTTGTGGAATATTATGATTCGGGAGGGAGTTAAGCCCAATGTTGTCTCATACAA CACTCTCATATATGGTTTTTGCTCCAATGGGAGTATGACTGAGGCAATATCTATTTGGAATCAGATGGAGAAAAATTTTT GCCATCCAAATGTGACCACATATAGCACTCTTATAAATGGGCTTGCGAAATCAGGGAACTTGTTCGGTGCTTTGGATATA TGGAACAAGATGATTAATTGTGGCTGCTGTCCTAATGTTGTGGCATACACCTGCATGGTGGATGTCCTTTGTCAGATGTC AATGTTTGACCAAGCTTATCGTCTTATTGATAATATGGCTTCTGAGGGTTGTCCTCCAACTGTTGTTACATTTAACACAT TTATCAAAGGCTTGTGTGGTGGTGGAAGAGTTCAATGGGCAATGCATGTGCTTGATCAGATGGAGAAATATGAGTGTGTG CCTAATATCAGAACATATAATGAATTGTTGGATGGTTTGTTTAGAATGAACAGATTGGGAGAAGCTTGTGGACTTATAAG GGAGATGGAAGAAAGGAAAGTGGGGCTAAATTCTGTCACTTACAACACTCTCATGAATGGATTTTCTTGTCTTGGGATGC AAGAAAGGGTTTTGCAGCTTTTGGGGAAAATGACAGTAAATGGAGTAAAGCCTGATGCCATTACAGTTAATATAATTATT ACCGTATACTGTAAGTTGGGTAAGGTTAGAACTGCGATCCAGCTTCTTGATACAATTACTGCAGGAAAGGAATTGTGTCC AGATATAATAGTGCATACTAGTCTTTTGTGGGGCATCTGTAATTGGTTAGGCATTGAAGAGGCAATTCTGCATCTTCAGA AAATGTTAAGCAGAGGAATCTTTCCCAATTTTATCACTTGGAATGTGTTAGTTCGAGGCTTCTTTAACAGCTTGGGTCAT ATGGGACCAATCCGCATCTTGGATGATATTTTAGGAAAGGGATAGTATGCAATTTCAAACGTCCTGAAAGGTAGCTCTGT GCGAGAAAACCAGCTTTTTGAGCCAAACCAAAAACTGGTTCAGGACTCCAGGTACAGTTTTTTTTTTATCCAAACCTAAT CTTCTTCCCCTAGTTGACTCACCCATGAAAACACTTCACCTTTGTCTCTCCAGGCTCCCTTAAATAGCTGAATTGCAACT ATATAATCCCAAATTGTGAGACTCAAATTCTAATTCATTCATTCTCTCAATTCGAACCTAGTCTTGGCTCGCCCTCTCAA TCACAAACCTAATTGCGACTTGTTCTTTGTGAATCTCTCAGACTCTCTGTTCATCTTAATCTTGGTCAAAAGACTGTGAG GAACCATTGTCTTCACTGTGTTCATGAATCTTCATGTTAGCTTGTGAATCGCGATTCTATGTTCGCAAAGCTGTGACTCA TATTTCATCTTTCACTAGTCTAAACACAGCTCTCTTCGAAGCTTCAACAACTTTCTTTGTGTTGAGACCACGTTCTATTT TGAGACCAAGATTGATTTCTGGGTTTGCTTTGTTACTCTCTCTACTTTTATTGTTATTTGGGTTTTCTCCGATCTTGGGA ATAGAACGTTACCTGTAACCGCTGCTTTTGTGTCCATGCAGGTAGAGTGCATTGCTCATTCTGTTTGATTTCGCGTGCTC GGTTGCTCCTGTTGTTTCATATTGAAGGTTTGATTTGTTTATTTTTTGGATCTTGTATACTGATTTATGTATTGCTCCAT TCATTTTCCAGGATAGGAAAACATCTTGCTTTTGTTGGTTATATTGTTTCTGATGCTCATGTGGCATTGTGAACTGAATT CTAATATTCAGGTTCAAATATTAAACCATTTTTGAGGAGAAAATGAAGTGCATTAGCACACTGAAGTAACCATTGACATA ATTCAGTTGATTATATGGAGTTTACCCTGCTGGAATTAAAAAGAAACCACTAATGCATGAACTCAGCATCATATTCTTCC TTCAAGTGAATTTTGTGATTCTTTATTTCTTTTGTGAAGAATTTCAACCCACATATGGCTTGCCAAAGTGGATACTTATT TTAAAACATTGCTACTGAATGCAAGTATGTGACATCTTCTTAAAAAGGGTGATCAATATGTGCATTTTAAAAGGTTTATG AAGTTTGTATGATTATTGATGGTAAAAATGATAGTACAACAGTTCAATAACTTGTTTAGAAAACAATTCAATAGAACACA AACTTACATTTGCCCCGACAGACAGTTTTTCCTTCTCTGTTTTCACCTTTGGAATTCATTAATGTACATTTGCATTGATG CAACAGTTTTTCAGACATGCTTTAACTTGTTTAAAGTTTAAACAAACCAACAATAAATGTTTACCAAACTTGGCATTGTT CTTGAGTTTTACTGTGGCGTTTCCATGCTTTTGCAGCTTTGCACCATACTGTGATCTATTCACATCCTGCTTCAGAGTAA TGTAAATCTTATTTTTCATATAGATGTACTGTTGGTCATGTATAGTCATCTGCGCATGTTAGGTACTCTGTTTGTTGTAT TTCGTTCTTCAATTAGAGTTACCAGCTTGATTAACAGATCCACAAATAATTTGGCTGACTGAGCATCTATGTTGTAGGTT AATGCTCCAAAGAAAAAGGTTTGAAAGCAAACAATCCTGTAGAAGCATTAGTTTATGGAACAATGGCACCTGTGGATGTC CAGAAAGCTTTAGAGGAATTATTTTGAAATTTCTTTGCTAGATAGTGTGATGGAAGATACAGAAGACAAGAAAAACATAG TTAAGTCTTGTGTTAATGGCATGAGAAACAAGGTCAGTTTTTCCTCATAATATAAGAACTCCATATTTCTTAAAAGTTAA CTGAGTGATAGCTAATCCTGCCTTAACTGGACAAGAGTACAGGATTGGCATATTTTGTAAGTCCTGCTGCTACTTCGACA GTCTTGTGTTTGGATGGTCACCATGAAAATTGAAAACAGTGGAGTATCCCATGCCTTCGAACCTCACACTCCTCCACCCC AACAAGATCTCGCATAGGCCTTCTCTCTGGCCAAGCAAGAAGCCCCACTACGACAAAGACCTCTCTCGCGTGGACCACTA GGACAAATGCCCGGTCCCGGTGCCCTCTCTGGAATTGTGCTTCCGCTAGGAACGAAGTCGCCCCAGATATGAGACATCGA GAAGGAAGTCAATGACACCCAGCTCATTGTGCAAGCTACAGATTCTCAGGGTGTGACTCTCACAGTGAATGCTTTAAGAT TAGGTATATATTTTGACTTTTAATTCTTTTTAATCAGCAGTTTGATTGGTTGGGTGATTGAGTTTCATTCCACTGGAAAT TTCTGAGATTACAAAGGAAGGATCTTTGGAATTAACTTTTTCTCCGATTTCTACTGTGTATATATATATATATATATATA TATATATATATATATATATATATATATATATTTGAATTGCAAGTTGCCCAATTTCTCAATCTCTTTGTATGTGATGCATG ATGTAACTTCTTTAGGTTATTTGAAGTCAA
CDS sequence (LotjaGi3g1v0143000.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATTTAAGAGATGGGTGTTCGTTATTGTTGAAATTGCGCAAGCCTTCAATCCCATTTGTGCTCAACACCAACCCAAT TTTCAATTTTGAGAAACCCCAGATGCAAAATTCTCCTGTTCCAGAGTCTCAGGTGGTGAAAGTGTTGAAACATGAGCAAG ATATTGTGTTAGCACTTGAATATTTCAAATCTGTGGCCAATTTTGGAGCATTCAAACACACTCATTTGACATACCATGTT ATGATTGAGAAGCTTGGAAGGAGCTCTGAAATTGATGGGGTTCAATATCTTTTGCAACAGATGAAGTTGGAAGAGATAGC TTGCTCTGAAGAGTTGTTTATAGTTGTGATGAATTCATATAGGAGAGCTGGGTTGGCTGATCAAGCTTTGAAGATGTTTT ATAGGATCAGGGAGTTTGGGTGTAAGCCTACAGTGAAGATATACAATCACCTTTTGGATGCCTTGCTTGGTGAGAACAGG TTTCAGATGATTAGTCCTGTTTATAACAACTTGAAGGGGGAAGGGTTGGAGCCAAATGTGTTTACATATAACATTCTTCT CAAGGCTCTGTGTAAGAATGGAAAGGTGGACGGTGCGCGCAAGTTGCTTGAAGAAATGCCGAATAAGGGTTGTACTCCGG ATGATGTGAGCTACACGACGATAATATCTTCCATGTGTAAATTTGGTCAAGTGGAGAAAGCAAAGGAGATAGCTATGAGG TTTACACCTGTAGTGCCTGTTTATAATGCTTTGATCAATGGATTATGTAAAGAGTGCAAGGTTAAGGAGGCATTTGATTT GATGAATGATATGGTGGTTTTTGCCCAAATGCTTATGAGAGGATGCAGCCCCAATATTCATACATTTTCTTCCTTGATAA AAGGTCATTTCTTGGGAGGGAGACCCGGTGATGCTCTTGGCTTGTGGAATATTATGATTCGGGAGGGAGTTAAGCCCAAT GTTGTCTCATACAACACTCTCATATATGGTTTTTGCTCCAATGGGAGTATGACTGAGGCAATATCTATTTGGAATCAGAT GGAGAAAAATTTTTGCCATCCAAATGTGACCACATATAGCACTCTTATAAATGGGCTTGCGAAATCAGGGAACTTGTTCG GTGCTTTGGATATATGGAACAAGATGATTAATTGTGGCTGCTGTCCTAATGTTGTGGCATACACCTGCATGGTGGATGTC CTTTGTCAGATGTCAATGTTTGACCAAGCTTATCGTCTTATTGATAATATGGCTTCTGAGGGTTGTCCTCCAACTGTTGT TACATTTAACACATTTATCAAAGGCTTGTGTGGTGGTGGAAGAGTTCAATGGGCAATGCATGTGCTTGATCAGATGGAGA AATATGAGTGTGTGCCTAATATCAGAACATATAATGAATTGTTGGATGGTTTGTTTAGAATGAACAGATTGGGAGAAGCT TGTGGACTTATAAGGGAGATGGAAGAAAGGAAAGTGGGGCTAAATTCTGTCACTTACAACACTCTCATGAATGGATTTTC TTGTCTTGGGATGCAAGAAAGGGTTTTGCAGCTTTTGGGGAAAATGACAGTAAATGGAGTAAAGCCTGATGCCATTACAG TTAATATAATTATTACCGTATACTGTAAGTTGGGTAAGGTTAGAACTGCGATCCAGCTTCTTGATACAATTACTGCAGGA AAGGAATTGTGTCCAGATATAATAGTGCATACTAGTCTTTTGTGGGGCATCTGTAATTGGTTAGGCATTGAAGAGGCAAT TCTGCATCTTCAGAAAATGTTAAGCAGAGGAATCTTTCCCAATTTTATCACTTGGAATGTGTTAGTTCGAGGCTTCTTTA ACAGCTTGGGTCATATGGGACCAATCCGCATCTTGGATGATATTTTAGGAAAGGGATAG
Protein sequence (LotjaGi3g1v0143000.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYLRDGCSLLLKLRKPSIPFVLNTNPIFNFEKPQMQNSPVPESQVVKVLKHEQDIVLALEYFKSVANFGAFKHTHLTYHV MIEKLGRSSEIDGVQYLLQQMKLEEIACSEELFIVVMNSYRRAGLADQALKMFYRIREFGCKPTVKIYNHLLDALLGENR FQMISPVYNNLKGEGLEPNVFTYNILLKALCKNGKVDGARKLLEEMPNKGCTPDDVSYTTIISSMCKFGQVEKAKEIAMR FTPVVPVYNALINGLCKECKVKEAFDLMNDMVVFAQMLMRGCSPNIHTFSSLIKGHFLGGRPGDALGLWNIMIREGVKPN VVSYNTLIYGFCSNGSMTEAISIWNQMEKNFCHPNVTTYSTLINGLAKSGNLFGALDIWNKMINCGCCPNVVAYTCMVDV LCQMSMFDQAYRLIDNMASEGCPPTVVTFNTFIKGLCGGGRVQWAMHVLDQMEKYECVPNIRTYNELLDGLFRMNRLGEA CGLIREMEERKVGLNSVTYNTLMNGFSCLGMQERVLQLLGKMTVNGVKPDAITVNIIITVYCKLGKVRTAIQLLDTITAG KELCPDIIVHTSLLWGICNWLGIEEAILHLQKMLSRGIFPNFITWNVLVRGFFNSLGHMGPIRILDDILGKG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 30 | 163 | 134 | 3.7E-18 | ||
| PANTHER | 43 | 306 | 264 | 2.5E-140 | – | |
| ProSiteProfiles | 74 | 108 | 35 | 6.884 | ||
| Pfam | 97 | 155 | 59 | 2.6E-4 | ||
| ProSiteProfiles | 109 | 143 | 35 | 9.942 | ||
| TIGRFAM | 115 | 145 | 31 | 7.2E-5 | ||
| ProSiteProfiles | 144 | 178 | 35 | 7.815 | ||
| Gene3D | 164 | 239 | 76 | 3.6E-24 | ||
| ProSiteProfiles | 179 | 213 | 35 | 14.59 | ||
| TIGRFAM | 181 | 214 | 34 | 2.8E-11 | ||
| Pfam | 183 | 227 | 45 | 2.5E-15 | ||
| ProSiteProfiles | 214 | 237 | 24 | 6.445 | ||
| TIGRFAM | 216 | 237 | 22 | 0.0016 | ||
| Gene3D | 240 | 312 | 73 | 1.9E-14 | ||
| ProSiteProfiles | 244 | 278 | 35 | 8.309 | ||
| Pfam | 245 | 295 | 51 | 5.5E-13 | ||
| TIGRFAM | 247 | 272 | 26 | 6.8E-7 | ||
| PANTHER | 273 | 330 | 58 | 2.5E-140 | – | |
| ProSiteProfiles | 285 | 319 | 35 | 10.709 | ||
| TIGRFAM | 287 | 321 | 35 | 5.4E-6 | ||
| Gene3D | 313 | 382 | 70 | 1.1E-22 | ||
| PANTHER | 316 | 467 | 152 | 2.5E-140 | – | |
| Pfam | 319 | 368 | 50 | 4.9E-18 | ||
| ProSiteProfiles | 320 | 354 | 35 | 12.134 | ||
| TIGRFAM | 322 | 356 | 35 | 3.2E-10 | ||
| ProSiteProfiles | 355 | 389 | 35 | 12.003 | ||
| TIGRFAM | 358 | 391 | 34 | 6.4E-10 | ||
| Gene3D | 383 | 453 | 71 | 2.3E-22 | ||
| Pfam | 389 | 437 | 49 | 4.6E-15 | ||
| ProSiteProfiles | 390 | 424 | 35 | 11.696 | ||
| TIGRFAM | 392 | 426 | 35 | 7.4E-7 | ||
| ProSiteProfiles | 425 | 459 | 35 | 11.005 | ||
| TIGRFAM | 427 | 461 | 35 | 2.0E-8 | ||
| PANTHER | 444 | 612 | 169 | 2.5E-140 | – | |
| Gene3D | 454 | 524 | 71 | 4.7E-17 | ||
| Pfam | 459 | 506 | 48 | 1.3E-11 | ||
| ProSiteProfiles | 460 | 494 | 35 | 10.063 | ||
| TIGRFAM | 463 | 495 | 33 | 1.7E-5 | ||
| ProSiteProfiles | 495 | 529 | 35 | 11.279 | ||
| TIGRFAM | 497 | 531 | 35 | 7.0E-6 | ||
| Pfam | 525 | 555 | 31 | 4.1E-8 | ||
| ProSiteProfiles | 530 | 565 | 36 | 7.914 | ||
| Gene3D | 538 | 619 | 82 | 2.1E-11 | ||
| ProSiteProfiles | 566 | 600 | 35 | 7.717 | ||
| ProSiteProfiles | 601 | 632 | 32 | 6.237 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0143000.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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