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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0143100 |
| Transcript ID | LotjaGi3g1v0143100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT2G25580.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q680H3|PP170_ARATH Pentatricopeptide repeat-containing protein At2g25580; TrEMBL-Plants: tr|K7KQF6|K7KQF6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0143100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:18996611..19001894) extracted from Lotus japonicus Gifu genome v1.2.
CTTCCATCGTCATTGCAAAGAGTCATCTTCTCGGATGCTCGTCATTCCTCTTCTGCTCGTGGTTTTGGCTGAATGATTTC TCCAATGGAAGTAAGAAACCACCAGAAATCAATTTTCTAGTTGCCTCTAGGCAAAAAGTATTTTTTAATGCAAAAAAACA ACTTTCTATCTTTCCTTTCTCTATTTAACCAAACAAAGGAAAAGAAATTCATATCACTCTTCCTCTTCTATCTTTAATTC TTTATTATATCAAACAATCTATAAAGTCCATTCTATTTCTCTCTTCTCTCTTACTCTCCTAAACCAAACAGAGCATTTGC TATCTGAATCGAAACCCTAATCCGGTGAGACTTGAAGACCAAGACTGATTTCCTGGTTTGTTACCCTTTTGCGTTCACGA ACATTGCTCATTCTGTTGAATTCAGCTTGCTTCGTTGCTCCTTTGATTCATTTTAAAGGTTTGTTTTGTTTATTCTTTTC TGATTTGTGTATTTTGCCATTGATTTTTTTGTTTGTGAACTATAAGATACAGAGATTTACATTCAAGTTTTAAAGCATTT TTCAAACAAATCAATCCTCAAGATTACTTTTGAAGTAATTAATGAGTTAGTTAGGTTGCAGAGCTGAAAGTAAAGTGAAT TATAGCTTGTAGGTAGAAGATGAAGCGAGCCGAAGTTCCGATTATCATGGTTCAATTGGTTTATGGGGGGTTTAACCAGA TGGAATGGAAAAGAAACAACTAATGCAGGATGAAATTAACATCATATTCTTCCCTCAAGTGATTCGAACCAAGTTTATCA CGCGATTCCTTGTTTCTTTTGTGATGAATTTCACCCAGCATGTGGCTTGCAATTAGTGTGTAGTGTACTTATTTAAAATG CATTGCTGGCTGCAGAATGCATGTATGTGACATCTTACAGAAAGGGGTGATTAATATGTGCATTGTTAAAGTTATGTTAA ATTTCTGTAGTTATTGTATTCTGTATCTATTCATTCTAAATCTGTGCAGGCCTTTATGAATATTTAAGTTTACCATTTTT TATGCTATTTTAATTTCTTATTCTGCTATCTACCTCTGTTTAGGTGTTTTATGCTTTTTAAATTGCGCTGTCCTTGCTGT GATTTTTTGATATATTAAGTTTTGTATTTGGTATGATTTCCCTATTTCATTTCATAATGTGAAGGTCACTGGAAGCCTGC CTTACTCAATTTCTCTTTCCTGGAAAGGATCTGGTTCAGATGCACAGGATAATGGACCAAATAATCAGCTAAACTTCCTT GTTTTTCCCAACAGTGATCATGTACCACAGGTCAGGAATATTTCCCTTTGATGTACAATGTGGTGATGTGAGTTTGTGGG TTGCAAACACTCGCTTGGTTAAGCACGTGCGCCTTATGTCGGTTTCAAAAAAATTCTTTATTACATTTTTTTGATGCGGT GGCAGTCCTCTGACTCTTTTGAGTGTATGCAGGTTGGTCCTTTCCAAACTACACAAACTGTTTAAAGTGTAAGTTCATTT GAATCTGCTTGGAATTGTGTATCTTGAGTAGGCTACTGTGAGTCTTGAGTGATTGCTTTTATTTATTTATTCCATTTTGT CTATTCTCAGATTATGCTAAGTCCCAAATAATGTCTCCTCTGAGTGCCTTGCTAGTTACAATTAATTCTCTTTTGCGGAA GTTCTCCAAATGCGAGATTGCGGATTCTATCAAAGGCCTTGGCACATTAAGGGCTATTTGCACTGCTACTGCTGAAAGGT GTGATTTTCAGCTTTCTGGTGGCGATCAACCACATGATTCTTTGGGTTACCGGGAAAGTTGTGCTGGGTTTCATCACCAA AATGCAGGTCAGTCTTATGGGAACAGTCATGCTAGTCCAGAGAATTTTTCTAACCAAAATGTAGTTCAAAATAATTTAGC TGGGCACAGAGGAAGTCTTAATGGGTACTATGGCCAAAGCGGCATGAAAGTGCCCCAGGAAGTTGGGGTAGTTGTTGATA ATTCTAGGGGATTTGGGATGGATCCAAATGCTTTTGTTGAGAAACATAATGGGATACAAGAACCTGGACAAAGGGTGCAG CATCACAATGCATTTTGTTCACCTAGGCATTTAGCGTATCAGGGAAATATTAAAGGGAACCACTCAGAACAATAGTCCAT TTTGGCAATCACCGAAAGATTTTTACAAAGGGAGTAATGAAGTGAGTCACCAGCACTCGGGTTATGGACAATTTCAGCAG AGTCTAGTAGATGGTCGGTCTCCTCCAAACTTGAATGGTGCACAGAGATCAATGGCTGGCTCTCATCTATCAAGTAATGC AAAGCCTGATGGTGAATCAGTGGAGGCATCTTCTGATAGTCCATATAGAGGTACACTTGAGGAACTAGATGGTTTCTGCA TGGAGGGTAAAGTGAAGGAAGCAGTTGAAGTTTTGGAATTGTTGGTAAAGCTTCATATTTCTGTGGATTTGCCTCGTTAT TTGCAATTGATGCGCCAGTGTGCGGAAGCTAAATCTCTTGAAGAGGCAAAAATTGTACACAGACATGTGTTGCATCATCT GTCACCTCTAACAGTTAGCACATACAATAGAATATTGGAAATGTATTTTGAATGCGGTTCTGTAGATGAAGCAATCAATA TGTTTGATAATATGCCTGAACGCAATTTGACTACTTGGGATACTATGATAACACAGCTTACAAAGAATGGGTTTGCAGAA GACTCAATTGATCTATTTACTCAGTTTAAAAAATTGGGACTGAAACCTGATGGTCAGATGTTCATTGCGGTTTTTTCTGC ATGTAGTATGCTGGGAGATCTTGACGAGGGAATGCTGCACTTTGAATCCATGAGGAAGGATTATGGAATTGGGCCATCTA TGGCTCATTTTGCCAGTGTAGTAGACATGATTGGTAGTATTGGGCATCTTGATGAAGCCTTTGAATTCATTGAAAAGATG CCAATTGAACCAAGTGCTGATGTATGGGAGTCTTTGATGAATTTCTGCAGAGTCCATGGAAACACTGAGCTTGGTGACCG TTGTGCTGAACTGGTTGAGCTGCTGGATCCCTCTCGCTTAAATGAGAAATCAAAGCCTGGCCTTTTACCGGTAAAACCGT CAGACTCAGACTTGAAATTAGCGAGCAAAAGTCTGCTGGAAGGTAGGAGCCGAGTCCATAGTTATCGAGCAGGAGATACT TCTCATCCTGAAAATGACCAGCTTTATGCTCTTCTTAGAGGTATGAAGCCACAAATGAAAGAAGCTGGCTATATTCCTGA GACTAAATTTGTGTTGCATGACATTGACCAGGAAAGCAAAGAAGATGCTCTTCTTGCTCACAGTGAGAGACTTGCTGTCG CTGAAGCTCTGCTTAGCACTCCTGCTCGCTCTCCTATTAGGGTAATTAAGAATCTCCGTGCTTGCGGTGATTGCCATACT GCACTAAAGATTATTTCTAAGCTTGTGGGAAGAGAACTCATCATTCGAGATGCTAAAAGGTTCCACCATTTTAAAGATGG GCTATGCTCCTGTCGGGATTATTGGTGAATGTTACCATAGGTATTGTAACCTTATTGATATCCCTGTTTTTTACACCGTT GATATTTACATATTGTGAAATTCAAGTGGCTGCAATTTAGGAAAACAAACTTTCATATTGCGAATGTAGTTAGGATCTAC TTGCATGAAACAAATTATACACTCTTTGCCCCCCTCCTCCCACCATGTTTGATGTGCAATTTTGTGTTTCTAGTTATTTA GACTAGAGTATGTATAATTATTAGTTAAATTCTAAATCAGAATTCTTGAAGTCTTGATTAAAGCGAAAAGGCGCATGACA GTGTTAGATTAAATAGATCAGTCAGTTATATTCAGTTACATCACCAATTAATGCTGATATTTTGTCCTTATTCCTATGGT TTTTTTTTTAAGGTTTATTGAAATGTGAGTTTAATTTTCACTTTCATAAATTTTAATTGTATATTTGGGCTTATTATCAT AAGAGATGGAGTAAAAGCTAAGTCAGTAGAACAAGATGCTTAGTAATTAGTATTACATTCTGAGTCTGGTACCTCCCCTT TTTTTTCTTATGAATCAGATGATGTCCTGATACAAGAGAGGAAGACACAGGATGTTTCTGCGTAAAACTCGCAGGAGACC CTTCTATGGGAAATCATGGGTTCCTCCACACTACAATTTTTGTCAATGTCTCACAGTAGGATAATGTATTTGTTAGGATC TAATTGTTACGGATTTAGATTTTTTAATTTTATTTTTAGAGTCTATCCTAGGATATTTTTTATTTTGGCATTGGGTTATC TTTTAAGATTTAGAGATTTTTTATATTAGGAGATTATCTTTTATTTTGGTTAGTATATCTTCTTTATTTCTTACGGGTTA AGTTATCTTAAATAGGAGTACCCTCCTAAGATTAGAATTATGAATTGAATTATTAAGTTGTAAAGGGACCAGCCCTATTG GAGAGGATCCAGCCTCTTGGTTAACTTGTGTCTTTTATTTTCCAGTTATATAATAAAAGTACCAAAAAAATTCTTTATCC TTATTTTTCTATCGATTGGCTGTTGGGATTTCACCAATCCTAACAATTGGTCCGACCTGCCGGATTCGAATCAGCGACCT GTGATCACTTGTCAAAAATTGTTCAAATAGAAATCGGAACTGAATCCCTGGCAAATGATTTATTCCTACTAATTTTTCCT CCTTCAAGAATTCTACACAAGCCTGTCTTTATTTACAAAGGCTTGTTTGAGAACACTGAAAGCATTTTGCTAGATTTGTG GCTGAGCAGTTTGTCAGATTGCAATATGATGTTAATGTGGACTACTATTTAACTGTCTTATATTGTATCTTGAGGTTTTT ATTGACTGTGTTACGAACCAAAATTAGTTATTACAACAACCTTGTAGTTCTTAAATGAATGTGTTGAAGCTGAGAACTGA CTTAGGTAGAAGCAGCAGCAGAAGGACTAACTCCCAAAATATGCCAATTCTGTACTATTGTCATAAATAAGAATAAAAGC AAAGGCTGTTGGTAGGTTTAATTCATGCTGTGGGTAGGTTGTATTCAGATTATTTAGGTATTTTCAGTTGTCCCTTGATG CGACCTTGCTCAATGTATTATTTATATAAGCCAGTCCAATTGGGGAAGGATTAGTTGTCACTCATTATCTCTTAGGAAAC ATTGGATTCTTATCATTATTTCTTTGTTAATTGTTCTTCTCTGTTTTCTTGTTACATTATATGTTTTACAAGGATAACCC AGCC
CDS sequence (LotjaGi3g1v0143100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGGCTCTCATCTATCAAGTAATGCAAAGCCTGATGGTGAATCAGTGGAGGCATCTTCTGATAGTCCATATAGAGG TACACTTGAGGAACTAGATGGTTTCTGCATGGAGGGTAAAGTGAAGGAAGCAGTTGAAGTTTTGGAATTGTTGGTAAAGC TTCATATTTCTGTGGATTTGCCTCGTTATTTGCAATTGATGCGCCAGTGTGCGGAAGCTAAATCTCTTGAAGAGGCAAAA ATTGTACACAGACATGTGTTGCATCATCTGTCACCTCTAACAGTTAGCACATACAATAGAATATTGGAAATGTATTTTGA ATGCGGTTCTGTAGATGAAGCAATCAATATGTTTGATAATATGCCTGAACGCAATTTGACTACTTGGGATACTATGATAA CACAGCTTACAAAGAATGGGTTTGCAGAAGACTCAATTGATCTATTTACTCAGTTTAAAAAATTGGGACTGAAACCTGAT GGTCAGATGTTCATTGCGGTTTTTTCTGCATGTAGTATGCTGGGAGATCTTGACGAGGGAATGCTGCACTTTGAATCCAT GAGGAAGGATTATGGAATTGGGCCATCTATGGCTCATTTTGCCAGTGTAGTAGACATGATTGGTAGTATTGGGCATCTTG ATGAAGCCTTTGAATTCATTGAAAAGATGCCAATTGAACCAAGTGCTGATGTATGGGAGTCTTTGATGAATTTCTGCAGA GTCCATGGAAACACTGAGCTTGGTGACCGTTGTGCTGAACTGGTTGAGCTGCTGGATCCCTCTCGCTTAAATGAGAAATC AAAGCCTGGCCTTTTACCGGTAAAACCGTCAGACTCAGACTTGAAATTAGCGAGCAAAAGTCTGCTGGAAGGTAGGAGCC GAGTCCATAGTTATCGAGCAGGAGATACTTCTCATCCTGAAAATGACCAGCTTTATGCTCTTCTTAGAGGTATGAAGCCA CAAATGAAAGAAGCTGGCTATATTCCTGAGACTAAATTTGTGTTGCATGACATTGACCAGGAAAGCAAAGAAGATGCTCT TCTTGCTCACAGTGAGAGACTTGCTGTCGCTGAAGCTCTGCTTAGCACTCCTGCTCGCTCTCCTATTAGGGTAATTAAGA ATCTCCGTGCTTGCGGTGATTGCCATACTGCACTAAAGATTATTTCTAAGCTTGTGGGAAGAGAACTCATCATTCGAGAT GCTAAAAGGTTCCACCATTTTAAAGATGGGCTATGCTCCTGTCGGGATTATTGGTGA
Protein sequence (LotjaGi3g1v0143100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGSHLSSNAKPDGESVEASSDSPYRGTLEELDGFCMEGKVKEAVEVLELLVKLHISVDLPRYLQLMRQCAEAKSLEEAK IVHRHVLHHLSPLTVSTYNRILEMYFECGSVDEAINMFDNMPERNLTTWDTMITQLTKNGFAEDSIDLFTQFKKLGLKPD GQMFIAVFSACSMLGDLDEGMLHFESMRKDYGIGPSMAHFASVVDMIGSIGHLDEAFEFIEKMPIEPSADVWESLMNFCR VHGNTELGDRCAELVELLDPSRLNEKSKPGLLPVKPSDSDLKLASKSLLEGRSRVHSYRAGDTSHPENDQLYALLRGMKP QMKEAGYIPETKFVLHDIDQESKEDALLAHSERLAVAEALLSTPARSPIRVIKNLRACGDCHTALKIISKLVGRELIIRD AKRFHHFKDGLCSCRDYW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 16 | 16 | - | – | |
| MobiDBLite | 1 | 25 | 25 | - | – | |
| Gene3D | 28 | 187 | 160 | 4.0E-28 | ||
| Pfam | 32 | 53 | 22 | 0.082 | ||
| ProSiteProfiles | 32 | 58 | 27 | 5.075 | ||
| PANTHER | 48 | 254 | 207 | 3.6E-36 | – | |
| ProSiteProfiles | 59 | 89 | 31 | 5.349 | ||
| ProSiteProfiles | 94 | 128 | 35 | 10.49 | ||
| Pfam | 96 | 125 | 30 | 7.3E-4 | ||
| TIGRFAM | 97 | 125 | 29 | 1.8E-4 | ||
| TIGRFAM | 128 | 160 | 33 | 0.0012 | ||
| ProSiteProfiles | 129 | 159 | 31 | 6.895 | ||
| Pfam | 148 | 208 | 61 | 8.9E-4 | ||
| ProSiteProfiles | 160 | 190 | 31 | 6.73 | ||
| Gene3D | 188 | 259 | 72 | 5.8E-7 | ||
| ProSiteProfiles | 196 | 226 | 31 | 6.248 | ||
| Pfam | 286 | 408 | 123 | 3.0E-39 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi3g1v0143100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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