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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0147200 |
| Transcript ID | LotjaGi3g1v0147200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT1G53600.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9C8L6|PPR80_ARATH Pentatricopeptide repeat-containing protein At1g53600, mitochondrial; TrEMBL-Plants: tr|A0A0B2ST92|A0A0B2ST92_GLYSO Pentatricopeptide repeat-containing protein, mitochondrial; Found in the gene: LotjaGi3g1v0147200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:19770493..19774397) extracted from Lotus japonicus Gifu genome v1.2.
ACGAAATTGAATATTTATAAAAGAGCCTCATTTTAGAAGTCACCAACTAGTTAACCCTTATTTTTTTTTGGGTCTTCTGC ATTAAAACAAAACATAACATGAATGATGAAACACCGCGCCAGAAACTTGCACCAAAAAATCCTTAACTTGAGTTTCCACT CACATTCCAACAGGAACAGCAACTTTCCGACGCAGTGCAACATTCAGATCTCCGAAAATGGACGAAACGGCAACGTTGGA GCAGCAGAAGCAGTGTTCCACAGAATGCCCCGAAAGAACACTGTCTCTTGGACCGCCATGCTCACAGTCTATGCACAAAA CGGTCAAATTGGAAATGCCCGCAAAGTGTTCGACGAAATGCCTGAACGAACCACTGCTTCCTACAATGCCATGATATCGG CTTACATCCGAAATGGTTGCAATGTGACTGAAGCTTACAAGCTTTTCTCAGCTATGGCTGAGCGAAACACCGTGTCGTAT GCTGCCATGATAACGGGTTTTGTTAAGGCGGGGAAGTTTCACTCGGCTGAAGAACTGTACGTTGAAGCCCCACGTGAGTT TTGTGACCCTGTGTGCTCCAATGCTTTGATAAACGGGTATTTGAAAATGGGTGAAACGAACGAGGCGATGAGGGTTTTCG AGAACATGGGTGAGAGGGATGTGGTTTCTTGGAGTGCTATGGTTGGTGGTTTGTGCAAGGATGGGAGAGTTGTTGGTGCT AGGAGATTGTTTGATAGAATGCCAACGAGAAACGTGGTTTCCTGGAGTGCAATGATTGATGGGTATATGGAGAAAGGGTT ATTTGAGAAAGGGTTTTGTTTGTTTTTGGACATGAGGAGGGAGGCTGTGGTGGGAGTTAACTCCACTACCTTGACCATAA TGTTTAAAGGGTGTGGAAGCTGTGGTGGGATAGCAGAGGGAATGCAGGTACATGGGTTGGTTTCGAGGATGGGATTTGAG TTTGATAGTGTTTTGAGTAATTCTGTTATTACTATGTATTGCATGCTTGGTTGCACTGACATGGCAAGGAAAGTGTTCTG CGCCATGACTAACAAGAATGTAGTTTCTTGGAATTCTTTGATTTCTGGATATGTTTATAACAATGAAGTGGAAGCAGGTT ATGAGCTTTTTGAGGTTATGCCGAAGAAAGACTTGATTTCATGGACAGCCATGATCACGGGGTTTGCTAAGAGTGGAAGA GTTGGAAAGGCCTTAGAGTTGTTTGATATGTTGAAAGAGAAGGATGATTTTGTTTGGACAGCTGTTATATCTGGGTTTGT GAGTAACAAAGAGTATGAGGGAGCCTTGCATTGGTTTAGCCGGATGAACCAGGAGGGCTGCAGGCCTAATCCTTCAACTA TTAGCAGTGTTCTAGCAGCTTCTGCTTCTTTGGCAGCACTGAATGAAGGACTTCAGGTTCATGCTCGTGCTCTGAAGATG AACCTAGAATATGATGTATCTATACAAAATTCTCTTATTTCATTTTACTCTAAGTGTGGAAATGTAATTGATGCCTACAG GATCTTCATAGATGTTGTTGAACCAAATGTCATTTCATATAACTCAATCATCAACGGATATGCACAAAATGGCTTTGGCG AAGAGGCTCTTACTATCTATAAAAGAATGCAGAGTCAAGGGCATGAACCCAACCATGTTACTTTCCTTGGTGTTCTTTCA GCCTGTACTCATGCAGGACTAGTTCAAGAGGGATGGAATTTATTTAACACCATGAGATCTCGTTATCAACTTGAGCCTGA AGTTGATCACTATGCCTGCATGGTTGATCTCCTTGGCCGTGCTGGTTTCCTAGATGAAGCTGTTGATCTAATCCGTTCTA TGCCATTCGAACCCCATTCTGGGGTTTGGGGAGCAATTCTTGGTGCAAGCAAGACCCACCAACGTCTTGACCTTGCTAAG CTTGCAGCTCAACATATTACTCTGCTGGAGCCTGAAAATGCAACTCCGTATGTGGTATTATCGAACTTGTATTCTGCTGC TGGGAAAAAAATTGAGGGTGACATAGTAAGAAAGACCAAGAAGTCAAAAGGAATTAAAAAAAGTCCAGGTTGTAGTTGGA TTACTATGAAAGATAAGGTTCATATGTTTCTTGCGGGGGATCGATCACACAGGAGTATGGAAGAGATAAAAGCCACTATA TTGACTATGGATAAGGAGATGCAGTGGTTGCATTATTGTGGGGTCTAACTAGCAGTCTCTTGATTACTTTCTCTCTACCA ATGTAACTTCTCTCTGTTGCAGAAGTGTCATCATTACCTGAGCAAGCAAGCTTGGTTCACTTGGTGTAAGACCATTCTCT TACCCCTCACTACTTAGTGTGTGACATATCTGCTTTGTCGATCATAATTGTGCTAGACTTCAGCTATTGTATTTATTATT ACTAACAATGTAAGTGCTACAATTAGTGTTTTGGAGATATTAGAAACTAAAAAGCTTAGTCTCTTATATAGCTGATATGG TAACATACTACATATAAAAATGGCTTAATCCAGTTTTTGGTCCCCATCCTTTGTCATAAATATGGCTTTAGTCCCTCGCC GGAGCAAAGGTGGGGATTGGTCCCCAGTTTTTGGCAAAATAGTTGGCTTTGGTCCTTCCGGTCGGTTGGGTCAACGCCGG AGCTCCGCCAGCTGATGTGGCTCTTGCCACGTCAATTAATGAGCTTAGGTGGAATATTTATTTATTTTTTATTTAATTTA AAAAAAAAACTCAGATTAATCACCATCATTCAATCTTCATCTTCATCTTCATCATCCTCAACTTCATCTTTTCTTTCCCA GAAACCCAATTTGAAACTTCCCCTAATTAAATTAAGGGTTAACTATCAGATTGGTCCCTGTCTTTGTTTCGCCGTCTGAG GTAAGTCCCTCCCCGGAAAATTTATTGTCTTTGGTCCTCATGTTTGAAAAACTTTTGGAGCGGATCCTCGCCGGAGCCCG GAGCTCCGGCGAGTAATGAAATGGCATGCTGAGTGGATTAACGGTGCTTATGTGGAATAAAAAAAATTAAAATAATAAAC ACATCAGAAAAAAAAAATTAAAGCCCAAAACTTTTCATAACTCACAAGTTAACCCCCAAATCAAAGAAACCCTAAATCCC TAAATCAGAAGATTCAAACCCAGTAACACTAAACCTAAAATCCCAAAATTTCTATTAAAACCAAATTCAGATTTCTCATA GCACCAACAGAAACCTAACAAATCAAACCCAGCAACACTACACCACTCTTTCCAGTTTGCACCGATTTCCCACTCTCCCA CCACCGATTCCCCACTCTCCCACCACCTCCACTCTCCCACCACCTCCACTCTCCCACCACTCACTCAAGAGCGACGAGAT CGAGATTGACAGAAGAGGAAGAAGTCGAGAAAGAGGAAAGAGCGCGCGGGAGGAGAAGCGCTGAACCAGATCTTCGTCGC CTTCGTTCATGCTGTTCATCATCACCGTCATCTTCGTCGCCGTCGGCGGCGACGGTCTGAGACGACAGGACGCGAGAGGC ACCATGTTGTGGCGAAACGACGTCGTTGTAATGGGTTCACGGGAGGGAAGACTGAAGGTCGAAGGTTTTCTTCATCTCCT CCCTGTTGGAATTGTGGTTTGGGGTTGTGTTTCAGGTTCGACGATCTGTGACCTCTGTATTGTGCTGTTGGTGCTCTTCC GGCTGGGAGCTGTGGGAAGCGTTTTTGTTTCTTGCTCTTCTTTTGCTAGTGTTTTTGTTTCTTTTTCTTTCTCTGAGATG TAACTGGGTTTGTGCCCCCTTTTATTAATTCAATTTTTGCCCAGATTATTAGTTCTATTTTTACCCAGATGTTGCCCAAG TTATAATTTTTACCCAGATCTTGTACGGTGAATGATGTGGGTGAAGGGGTAGGAAATGGTTTTTG
CDS sequence (LotjaGi3g1v0147200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGAAACACCGCGCCAGAAACTTGCACCAAAAAATCCTTAACTTGAGTTTCCACTCACATTCCAACAGGAACAGCAA CTTTCCGACGCAGTGCAACATTCAGATCTCCGAAAATGGACGAAACGGCAACGTTGGAGCAGCAGAAGCAGTGTTCCACA GAATGCCCCGAAAGAACACTGTCTCTTGGACCGCCATGCTCACAGTCTATGCACAAAACGGTCAAATTGGAAATGCCCGC AAAGTGTTCGACGAAATGCCTGAACGAACCACTGCTTCCTACAATGCCATGATATCGGCTTACATCCGAAATGGTTGCAA TGTGACTGAAGCTTACAAGCTTTTCTCAGCTATGGCTGAGCGAAACACCGTGTCGTATGCTGCCATGATAACGGGTTTTG TTAAGGCGGGGAAGTTTCACTCGGCTGAAGAACTGTACGTTGAAGCCCCACGTGAGTTTTGTGACCCTGTGTGCTCCAAT GCTTTGATAAACGGGTATTTGAAAATGGGTGAAACGAACGAGGCGATGAGGGTTTTCGAGAACATGGGTGAGAGGGATGT GGTTTCTTGGAGTGCTATGGTTGGTGGTTTGTGCAAGGATGGGAGAGTTGTTGGTGCTAGGAGATTGTTTGATAGAATGC CAACGAGAAACGTGGTTTCCTGGAGTGCAATGATTGATGGGTATATGGAGAAAGGGTTATTTGAGAAAGGGTTTTGTTTG TTTTTGGACATGAGGAGGGAGGCTGTGGTGGGAGTTAACTCCACTACCTTGACCATAATGTTTAAAGGGTGTGGAAGCTG TGGTGGGATAGCAGAGGGAATGCAGGTACATGGGTTGGTTTCGAGGATGGGATTTGAGTTTGATAGTGTTTTGAGTAATT CTGTTATTACTATGTATTGCATGCTTGGTTGCACTGACATGGCAAGGAAAGTGTTCTGCGCCATGACTAACAAGAATGTA GTTTCTTGGAATTCTTTGATTTCTGGATATGTTTATAACAATGAAGTGGAAGCAGGTTATGAGCTTTTTGAGGTTATGCC GAAGAAAGACTTGATTTCATGGACAGCCATGATCACGGGGTTTGCTAAGAGTGGAAGAGTTGGAAAGGCCTTAGAGTTGT TTGATATGTTGAAAGAGAAGGATGATTTTGTTTGGACAGCTGTTATATCTGGGTTTGTGAGTAACAAAGAGTATGAGGGA GCCTTGCATTGGTTTAGCCGGATGAACCAGGAGGGCTGCAGGCCTAATCCTTCAACTATTAGCAGTGTTCTAGCAGCTTC TGCTTCTTTGGCAGCACTGAATGAAGGACTTCAGGTTCATGCTCGTGCTCTGAAGATGAACCTAGAATATGATGTATCTA TACAAAATTCTCTTATTTCATTTTACTCTAAGTGTGGAAATGTAATTGATGCCTACAGGATCTTCATAGATGTTGTTGAA CCAAATGTCATTTCATATAACTCAATCATCAACGGATATGCACAAAATGGCTTTGGCGAAGAGGCTCTTACTATCTATAA AAGAATGCAGAGTCAAGGGCATGAACCCAACCATGTTACTTTCCTTGGTGTTCTTTCAGCCTGTACTCATGCAGGACTAG TTCAAGAGGGATGGAATTTATTTAACACCATGAGATCTCGTTATCAACTTGAGCCTGAAGTTGATCACTATGCCTGCATG GTTGATCTCCTTGGCCGTGCTGGTTTCCTAGATGAAGCTGTTGATCTAATCCGTTCTATGCCATTCGAACCCCATTCTGG GGTTTGGGGAGCAATTCTTGGTGCAAGCAAGACCCACCAACGTCTTGACCTTGCTAAGCTTGCAGCTCAACATATTACTC TGCTGGAGCCTGAAAATGCAACTCCGTATGTGGTATTATCGAACTTGTATTCTGCTGCTGGGAAAAAAATTGAGGGTGAC ATAGTAAGAAAGACCAAGAAGTCAAAAGGAATTAAAAAAAGTCCAGGTTGTAGTTGGATTACTATGAAAGATAAGGTTCA TATGTTTCTTGCGGGGGATCGATCACACAGGAGTATGGAAGAGATAAAAGCCACTATATTGACTATGGATAAGGAGATGC AGTGGTTGCATTATTGTGGGGTCTAA
Protein sequence (LotjaGi3g1v0147200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMKHRARNLHQKILNLSFHSHSNRNSNFPTQCNIQISENGRNGNVGAAEAVFHRMPRKNTVSWTAMLTVYAQNGQIGNAR KVFDEMPERTTASYNAMISAYIRNGCNVTEAYKLFSAMAERNTVSYAAMITGFVKAGKFHSAEELYVEAPREFCDPVCSN ALINGYLKMGETNEAMRVFENMGERDVVSWSAMVGGLCKDGRVVGARRLFDRMPTRNVVSWSAMIDGYMEKGLFEKGFCL FLDMRREAVVGVNSTTLTIMFKGCGSCGGIAEGMQVHGLVSRMGFEFDSVLSNSVITMYCMLGCTDMARKVFCAMTNKNV VSWNSLISGYVYNNEVEAGYELFEVMPKKDLISWTAMITGFAKSGRVGKALELFDMLKEKDDFVWTAVISGFVSNKEYEG ALHWFSRMNQEGCRPNPSTISSVLAASASLAALNEGLQVHARALKMNLEYDVSIQNSLISFYSKCGNVIDAYRIFIDVVE PNVISYNSIINGYAQNGFGEEALTIYKRMQSQGHEPNHVTFLGVLSACTHAGLVQEGWNLFNTMRSRYQLEPEVDHYACM VDLLGRAGFLDEAVDLIRSMPFEPHSGVWGAILGASKTHQRLDLAKLAAQHITLLEPENATPYVVLSNLYSAAGKKIEGD IVRKTKKSKGIKKSPGCSWITMKDKVHMFLAGDRSHRSMEEIKATILTMDKEMQWLHYCGV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 28 | 58 | 31 | 5.568 | ||
| Gene3D | 29 | 184 | 156 | 1.1E-32 | ||
| PANTHER | 40 | 146 | 107 | 8.1E-116 | – | |
| ProSiteProfiles | 59 | 89 | 31 | 10.095 | ||
| TIGRFAM | 61 | 89 | 29 | 1.1E-4 | ||
| Pfam | 61 | 89 | 29 | 4.8E-6 | ||
| ProSiteProfiles | 90 | 125 | 36 | 10.435 | ||
| Pfam | 93 | 122 | 30 | 0.0081 | ||
| Pfam | 124 | 148 | 25 | 0.0023 | ||
| TIGRFAM | 124 | 154 | 31 | 2.3E-4 | ||
| ProSiteProfiles | 126 | 152 | 27 | 5.557 | ||
| ProSiteProfiles | 155 | 185 | 31 | 9.81 | ||
| PANTHER | 159 | 213 | 55 | 8.1E-116 | – | |
| TIGRFAM | 160 | 188 | 29 | 2.5E-5 | ||
| Pfam | 184 | 213 | 30 | 3.1E-7 | ||
| Gene3D | 185 | 247 | 63 | 6.8E-9 | ||
| ProSiteProfiles | 186 | 220 | 35 | 11.279 | ||
| TIGRFAM | 188 | 219 | 32 | 5.1E-6 | ||
| PANTHER | 206 | 276 | 71 | 8.1E-116 | – | |
| Pfam | 216 | 264 | 49 | 1.2E-10 | ||
| TIGRFAM | 219 | 247 | 29 | 4.9E-5 | ||
| ProSiteProfiles | 221 | 251 | 31 | 6.456 | ||
| Gene3D | 248 | 380 | 133 | 1.0E-28 | ||
| ProSiteProfiles | 253 | 287 | 35 | 7.563 | ||
| PANTHER | 273 | 348 | 76 | 8.1E-116 | – | |
| ProSiteProfiles | 288 | 318 | 31 | 7.618 | ||
| Pfam | 293 | 320 | 28 | 0.0027 | ||
| ProSiteProfiles | 319 | 349 | 31 | 9.514 | ||
| TIGRFAM | 321 | 350 | 30 | 3.0E-4 | ||
| Pfam | 321 | 350 | 30 | 3.0E-5 | ||
| ProSiteProfiles | 350 | 380 | 31 | 10.49 | ||
| Pfam | 352 | 380 | 29 | 3.9E-7 | ||
| TIGRFAM | 352 | 380 | 29 | 5.1E-6 | ||
| Pfam | 381 | 426 | 46 | 5.0E-9 | ||
| ProSiteProfiles | 381 | 415 | 35 | 11.038 | ||
| Gene3D | 381 | 478 | 98 | 1.6E-17 | ||
| TIGRFAM | 384 | 416 | 33 | 1.1E-6 | ||
| ProSiteProfiles | 416 | 450 | 35 | 5.568 | ||
| PANTHER | 433 | 646 | 214 | 8.1E-116 | – | |
| ProSiteProfiles | 451 | 481 | 31 | 7.037 | ||
| Pfam | 456 | 477 | 22 | 0.098 | ||
| Gene3D | 479 | 669 | 191 | 7.9E-31 | ||
| Pfam | 481 | 528 | 48 | 2.2E-12 | ||
| ProSiteProfiles | 482 | 516 | 35 | 13.055 | ||
| TIGRFAM | 484 | 517 | 34 | 3.4E-10 | ||
| ProSiteProfiles | 517 | 547 | 31 | 7.892 | ||
| ProSiteProfiles | 553 | 583 | 31 | 7.256 | ||
| Pfam | 557 | 580 | 24 | 0.039 | ||
| ProSiteProfiles | 619 | 653 | 35 | 5.251 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0147200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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