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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0152700 |
| Transcript ID | LotjaGi3g1v0152700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | U-box domain-containing protein; TAIR: AT5G01830.1 ARM repeat superfamily protein; Swiss-Prot: sp|Q9LZW3|PUB16_ARATH U-box domain-containing protein 16; TrEMBL-Plants: tr|A0A072UHQ2|A0A072UHQ2_MEDTR Plant U-box protein; Found in the gene: LotjaGi3g1v0152700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:20626731..20629438) extracted from Lotus japonicus Gifu genome v1.2.
TATTAAGTGACTATACATTTTTTTTAACAATATTATGTTTAAAGACTCCAACTATCTATCAACTATGTTAAACCTGGTGA TAAGATATTGTCAGCAGGTGAATTTTGACAAACAAATAAAACCAAAATAAACAGACAAATCAAAACAGTCAAAATTCAAA ACCACTATTATATCATTCATTGCTAGCTAGCATACCCATGTTTATTTGATTGAACAGGTTGAGTTTCACACGCAGAAAAC AAAGCCAAATTGTTTATGGATATGTATGTACTACACATTCAATGTTTTCCTTCAATTATTTGTTTTTTCCTTCATCTCTA ATCAATCAAAAGTCATCATCATCATCATCTTCATATCCTTCCTTTACTTCTTCCTTCTATTCCTTCCAACCTCTTAACTA ACACCAACCAATCACATTTCACAAATTGGCTATTGCATTATTCATAACAATTAAACATGGCGATTTCCCCAACGTTCCCA ACCAGAAAACGACCAACCCGAACGTCGTCGTTTCACTCTTCCAACCTTGCCGACTTAAGCCTCCTCCACTCTCTCCTCCA CCTCACCGACCAGATATGTTCCACCGCCACCGCCGCAACCAACTTCCTCCTCAGCCGCACTTCCTCCTCCACCGTCCGCA AAACGCACCTCCTCGGCGTCGTTTTCGAAGACCTCCTCCGCGTTTCATCTTCATCTTCTCCAACCTCAAGCTCCCTCCTC CTCTGCCTCGAGGAAATGTACATCGTGCTTCACAGAATCAAAACGCTCATCGAAGATTGCTCAAATCAAAGCAAATTCTC ATTCCTCATGCAAATCGAAACCGTCGCTGATAGCTTCCACAAGCTCACCGGAGAGTTATCCACTCTTCTCGATATCTTCC CTCTGCAAGAACTCGTCGACCTCAACGACGACGTTCGAGAACTCGTTCTCCTCATCAGACGGCAGTGCTCCGAATCCAAA CCGGTTCTCGGAGCGGAACAATCAGAGCTCCGGAACGACGTCGTTTCAATCCTCAACGGAATTAAGAGCGAGATTGTTCC TGATCAAGCACAATTAGCCTCAATCTTCGAGAAATTGGAGATTCGCGATTCTTCTACTTGTAGATCAGAGATTGAGAGCC TGCAACGAGAGATTCACAATCGGAGCGAGGAAGAACAACAACAACAATCGAGATCAGAAATCGTCGCGTTGATCGGACTT GTTCGTTACGCCAAGTGCGTTCTCTTCGGCGCGTCGACGCCGCCGCGAAGTGAGTGTCTACGGCGGAAGGAATCCTCATC GGAGTTATCAGTGCCGGCGGATTACCGGTGCCCGATAAGCTTAGAACTGATGCGTGACCCTGTCGTCGTGGCAACTGGAC AGACGTACGATCGGGTTTCCATCAAGCTCTGGATGGATGCAGGACACAACACGTGTCCCAAGACAGGTCAGATCCTGGCC CACACTGACCTCATCCCAAACCATGCGCTGCGGAACATGATAGCGTTATGGTGCCGCGAGCAGAGGATCCCGTTCGACGC GGAAACCGTTACAGGGAAAATCAACGGTGGCGTAACAAACAAAACCGCCTTAGAAGCCACCAAAATGATGTCAACGTTTT TAGTCAACAAACTCAACGTTTCGGATTTGGATGAATCAAACGCCGTCGTTTACGAGCTTCGGGTTCTGGCGAAAACAGAC TCGGATAGCCGAGCCTGCATTGCCGAAGCTGGAGCGATTCCGGTTCTGGTTCGGTATCTCACCACCGGTTCGCACCACCC GAGCCTCCAGGTGAACGCGGTGACCACGATTCTCAATCTCTCGATACTGGAAGCGAACAAGACGAGGATCATGGAGACTG ACGGCGCGTTGAACGGCGTCGCGGAGGTGCTGCGGTCTGGTGCCACGTGGGAGGCCAAGGCGAACGCGGCGGCGACGGTG TTCAGCTTGACTGGGGTCCCGGTTTACAGGAAGAAGCTCGGGAGGAAGATGCGTGTGCTGAGCGGGTTGGTCGAGCTTGC CAAGTGTGGGCCTGAGGGGGCTAGGAGGGACGCTTTGGCGGCGATTCTGAATCTCGCGGCGGACCGCGAGACGGTGGGGA GATTGGTGGAGGGCGGGGCGGTGGAGGTTGCGGCGGAGGTTATGGCGGTGATGCCGGAGGAGGCGGTGACGATTCTTGAG GCGGTGGTGAAGCGTGGTGGGTTGATGGCGGTGGCGGCGGCTTATGTGGGGATTAAGAAGTTGGGGAATGTGTTGAGGGA TGGGTCGGAGAGAGCGAGGGAGAGTGCGGCGGCGACGCTTGTTACGATGTGTAGGAAGGGTGGGTCGGAGATTGTGGCGG AGCTGGCGGCGATTCCTGGAGTGGAGAGGGTGATTTGGGAGTTGATGGCGGTGGGGAGTGTTAGAGGGAGGAGGAAGGCG GCGACACTGTTGCGGATACTAAGGAGGGGGGCGGCGGGGTTAGAGAGTGAAGAATTGTCAACTACCACGTTTGTCAATTC CTCAACTACTACTGTGGTTGTTCCAACTACCACAGTGGCAAACAATTGATTTGTAAATTTCTCAAATAAGCACTAATTCT TGTATCATTTTGATATTTGATTTTTTCAGATCCTGTAAAATGTAATATATGGAGCAATGTCTCGTGAAATACAACATTTT TCCATTCTTTCATTTGTTTGAGTTGAGTTTTCAAATTGTGAATGATAAATCTGAGTTTTGAAACATGC
CDS sequence (LotjaGi3g1v0152700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGATTTCCCCAACGTTCCCAACCAGAAAACGACCAACCCGAACGTCGTCGTTTCACTCTTCCAACCTTGCCGACTT AAGCCTCCTCCACTCTCTCCTCCACCTCACCGACCAGATATGTTCCACCGCCACCGCCGCAACCAACTTCCTCCTCAGCC GCACTTCCTCCTCCACCGTCCGCAAAACGCACCTCCTCGGCGTCGTTTTCGAAGACCTCCTCCGCGTTTCATCTTCATCT TCTCCAACCTCAAGCTCCCTCCTCCTCTGCCTCGAGGAAATGTACATCGTGCTTCACAGAATCAAAACGCTCATCGAAGA TTGCTCAAATCAAAGCAAATTCTCATTCCTCATGCAAATCGAAACCGTCGCTGATAGCTTCCACAAGCTCACCGGAGAGT TATCCACTCTTCTCGATATCTTCCCTCTGCAAGAACTCGTCGACCTCAACGACGACGTTCGAGAACTCGTTCTCCTCATC AGACGGCAGTGCTCCGAATCCAAACCGGTTCTCGGAGCGGAACAATCAGAGCTCCGGAACGACGTCGTTTCAATCCTCAA CGGAATTAAGAGCGAGATTGTTCCTGATCAAGCACAATTAGCCTCAATCTTCGAGAAATTGGAGATTCGCGATTCTTCTA CTTGTAGATCAGAGATTGAGAGCCTGCAACGAGAGATTCACAATCGGAGCGAGGAAGAACAACAACAACAATCGAGATCA GAAATCGTCGCGTTGATCGGACTTGTTCGTTACGCCAAGTGCGTTCTCTTCGGCGCGTCGACGCCGCCGCGAAGTGAGTG TCTACGGCGGAAGGAATCCTCATCGGAGTTATCAGTGCCGGCGGATTACCGGTGCCCGATAAGCTTAGAACTGATGCGTG ACCCTGTCGTCGTGGCAACTGGACAGACGTACGATCGGGTTTCCATCAAGCTCTGGATGGATGCAGGACACAACACGTGT CCCAAGACAGGTCAGATCCTGGCCCACACTGACCTCATCCCAAACCATGCGCTGCGGAACATGATAGCGTTATGGTGCCG CGAGCAGAGGATCCCGTTCGACGCGGAAACCGTTACAGGGAAAATCAACGGTGGCGTAACAAACAAAACCGCCTTAGAAG CCACCAAAATGATGTCAACGTTTTTAGTCAACAAACTCAACGTTTCGGATTTGGATGAATCAAACGCCGTCGTTTACGAG CTTCGGGTTCTGGCGAAAACAGACTCGGATAGCCGAGCCTGCATTGCCGAAGCTGGAGCGATTCCGGTTCTGGTTCGGTA TCTCACCACCGGTTCGCACCACCCGAGCCTCCAGGTGAACGCGGTGACCACGATTCTCAATCTCTCGATACTGGAAGCGA ACAAGACGAGGATCATGGAGACTGACGGCGCGTTGAACGGCGTCGCGGAGGTGCTGCGGTCTGGTGCCACGTGGGAGGCC AAGGCGAACGCGGCGGCGACGGTGTTCAGCTTGACTGGGGTCCCGGTTTACAGGAAGAAGCTCGGGAGGAAGATGCGTGT GCTGAGCGGGTTGGTCGAGCTTGCCAAGTGTGGGCCTGAGGGGGCTAGGAGGGACGCTTTGGCGGCGATTCTGAATCTCG CGGCGGACCGCGAGACGGTGGGGAGATTGGTGGAGGGCGGGGCGGTGGAGGTTGCGGCGGAGGTTATGGCGGTGATGCCG GAGGAGGCGGTGACGATTCTTGAGGCGGTGGTGAAGCGTGGTGGGTTGATGGCGGTGGCGGCGGCTTATGTGGGGATTAA GAAGTTGGGGAATGTGTTGAGGGATGGGTCGGAGAGAGCGAGGGAGAGTGCGGCGGCGACGCTTGTTACGATGTGTAGGA AGGGTGGGTCGGAGATTGTGGCGGAGCTGGCGGCGATTCCTGGAGTGGAGAGGGTGATTTGGGAGTTGATGGCGGTGGGG AGTGTTAGAGGGAGGAGGAAGGCGGCGACACTGTTGCGGATACTAAGGAGGGGGGCGGCGGGGTTAGAGAGTGAAGAATT GTCAACTACCACGTTTGTCAATTCCTCAACTACTACTGTGGTTGTTCCAACTACCACAGTGGCAAACAATTGA
Protein sequence (LotjaGi3g1v0152700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAISPTFPTRKRPTRTSSFHSSNLADLSLLHSLLHLTDQICSTATAATNFLLSRTSSSTVRKTHLLGVVFEDLLRVSSSS SPTSSSLLLCLEEMYIVLHRIKTLIEDCSNQSKFSFLMQIETVADSFHKLTGELSTLLDIFPLQELVDLNDDVRELVLLI RRQCSESKPVLGAEQSELRNDVVSILNGIKSEIVPDQAQLASIFEKLEIRDSSTCRSEIESLQREIHNRSEEEQQQQSRS EIVALIGLVRYAKCVLFGASTPPRSECLRRKESSSELSVPADYRCPISLELMRDPVVVATGQTYDRVSIKLWMDAGHNTC PKTGQILAHTDLIPNHALRNMIALWCREQRIPFDAETVTGKINGGVTNKTALEATKMMSTFLVNKLNVSDLDESNAVVYE LRVLAKTDSDSRACIAEAGAIPVLVRYLTTGSHHPSLQVNAVTTILNLSILEANKTRIMETDGALNGVAEVLRSGATWEA KANAAATVFSLTGVPVYRKKLGRKMRVLSGLVELAKCGPEGARRDALAAILNLAADRETVGRLVEGGAVEVAAEVMAVMP EEAVTILEAVVKRGGLMAVAAAYVGIKKLGNVLRDGSERARESAAATLVTMCRKGGSEIVAELAAIPGVERVIWELMAVG SVRGRRKAATLLRILRRGAAGLESEELSTTTFVNSSTTTVVVPTTTVANN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 14 | 678 | 665 | 7.8E-301 | – | |
| PANTHER | 14 | 678 | 665 | 7.8E-301 | – | |
| SUPERFAMILY | 77 | 621 | 545 | 9.05E-5 | ||
| Coils | 219 | 239 | 21 | - | – | |
| Gene3D | 264 | 355 | 92 | 3.8E-27 | ||
| SUPERFAMILY | 269 | 352 | 84 | 2.25E-28 | – | |
| ProSiteProfiles | 278 | 352 | 75 | 41.638 | ||
| Pfam | 279 | 350 | 72 | 8.3E-19 | ||
| SMART | 282 | 345 | 64 | 1.3E-30 | ||
| CDD | 283 | 325 | 43 | 6.36804E-25 | – | |
| SUPERFAMILY | 381 | 656 | 276 | 5.4E-25 | ||
| SMART | 408 | 450 | 43 | 4.1E-4 | ||
| Pfam | 409 | 449 | 41 | 2.0E-6 | ||
| ProSiteProfiles | 419 | 463 | 45 | 13.177 | ||
| SMART | 495 | 535 | 41 | 190.0 | ||
| SMART | 572 | 613 | 42 | 480.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ubiquitin-protein transferase activity | Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Protein ubiquitination | The process in which one or more ubiquitin groups are added to a protein. |
Expression pattern of LotjaGi3g1v0152700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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