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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0154400 |
| Transcript ID | LotjaGi3g1v0154400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Calcium ion binding protein, putative; TAIR: AT1G53210.1 sodium/calcium exchanger family protein / calcium-binding EF hand family protein; Swiss-Prot: sp|Q8L783|CAX5_ARATH Vacuolar cation/proton exchanger 5; TrEMBL-Plants: tr|V7BXV4|V7BXV4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0154400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:20961368..20967131) extracted from Lotus japonicus Gifu genome v1.2.
TTCCTAAATTAGGGATCCGAAGCAAAATCCGCAGAAAAATGGGTGTTTAGGGGTGTTTCTACTGTATAGTGGTCCAGGAA TCATTTTTCTATTTTTTTTCTATTTTATACTCTTCCCGGATCCCGTTTAGTTTCTTCCCACTTTTATACTGACTCAGAAA AGTAAACACACGTGACACACACGGAAACCACACACACTGACACCTATTATAACACACTAGTCATTACTCTCACTCTCACC CCACATAACACAACCACCAACCATGTCTCTCTCTTCCCCTTCCCACCGCACCCTCTTCATCTTCTTCCTTCTGATCCTCT GCGGTCACACCCACGCTCGCTTCTTCACTCCTCTTGATCCGGTTTCAGACGGTGGCTGGAGCAGCATCATTCGCCTCCCC ACGGCGGAGGAATCCACCTGTGAGCAGACCTACGGCTTCTTACCCTGCACCACCACCGTGCTTGGAAACTTGTTCCTCAT TCTCATCTATGGCTTCCTCATGTTCAAAGCCGCTACGTTTTTATCCAACGGTAGTGAGCTCTTGCTTGAGATCTTGGGTC CCGGCATTGTTGGTGGCTTGTTTCTTCCCATTCTCGGTGCTCTCCCTGATGCCATGCTCATTCTCGGTCGGTAACAATCC ATAAACAAACATTCATTTCCTTTTCAATTTCGTCGTTTGATTTGAAAATTTAGAGTTGTATGTTGTAGTGATTTTGGTTT TTCTGATGATTCTCTCTGTTTTCTTCAATTGTTGAATTGATTCGTTACTGTTGAGAATTGTTACTTTCTGAATCTGAACC TTGTTGTTCATGGCATATATTTTCTATTTTTACTGCGTATTATCCCATTTTTGAGGTATTTGCAAGTTGAAATGGATGGG GAGGTCCAGGGATCAACCTTGATCAACCTTGATCCCTGAAGAGTGCAATTTATCTTTCTGATGTACCAAAAAAAAAATTG AAATAAATTTTCATTGGTTATTTCTGGTGGATTCTTCTGTTTCCCTTCATATAATCATGTGTGGTATACTTTTATTGAGT TTTTTTTTTTTCTGGGTTCCTATGCTGTTGCTTTTGGTCTTCACTTTTATGGATCACTATGAACTCCAACTGTCTAGTCA AAATTTCACTGATTTATTATAATCTTGTAACATCGTATTTGGTATCTCGTTGACGAGGGTTTGTGCTAATGTGCTGTTTT ATTTGTGCTATTTGTATCCCTTTTGATTTTTAATCCGTGTTTCGTGATTTTTCTAGTGTCTGGGCTTTCTGGGAGTAAAG AAACTGCTCAGAGTCAGGTATCTGTTGGAATGGGGCTGCTAGCTGGGTCAACAGTGCTGCTTCTCACTATAATATGGGGA ACCTGTGTAATTGTTGGCAAGTGTGACATTGAGGGTACAATTGCAATTGATTCACAAGACACCCGGGGATTTAGTTTAAC TGGTATGTCATTTCATGTTGTTCACTATTCATGATTTTTTTTTGTTTTTTAGATTAAGCACAGATAACTTCTCCTCGCCC AATGCCCAACTATTGAAATTATAGTGCTTCATTCTCTTTGTTGTCATCCAAGGAGTCAACTTTCATTGGGAGTTTCTTCG TAAAAAACATTAACTATGTAGAATCTAAAACTGTACTTACCCTGAATATTTATTTGTTGATTAATTTTGATTGGTTTTTG AGAAGTGTCATGAACTACCCAAAAAGCCTAATCTCTAACATCTCTGACATGGAGCCCATTTAGATGCAAATGAAAAAGCT CTTATCAGAGCTTATTTAGTGCTTTTTAAAGTAGATAACTTCCAATAAGCTCTTATAAGCTGGTATCCAAATATGCCCAT GATCCCTCATGCTAGAGCCCTTTTGGGCATAATTCACAGATTCTGCACTTGCCTACCTATTTTGTGCTTAATTTCATCAT TTCTGGTCTTTTTATTTAGAAGAATGGGGATGTCAAGTATAGAACTCTACACTACTTGGTCATAGAGGCTATGATGTTAT GCCACCAGCCAACTATACCCAAAAGGTTTAATGCATTAGGCGTGAAGGAAAATGAATGGTTTTATACTTTTATAAGGTCT CTAACAAGGGGTAATACTTCTGAGATAGTTAATATAGTAATAAATGTGAGTACCTTTCTTCTTCCTTGATTTTAGATCAC TGATCATATAATGCATTCAAATGACTGGAGGTGTTCCTAGATCATTATTATTGTCTTAATTATAAATTTGATAAAATTGG CATGCTGGTTGAACCGTTGAAGCAATATTGTGATTCCCCATTTTGTTTTTTTAATTTATTATTTTATTTCTAAACCATGA CTTCTGTGTATATCCTGTTGTGTTGTATGTTCACATGTCTGGAATTTTTGATTAATTTTGATCCTCAGTTGATTACAATC TTCATATGCAGGTTCTGGTGTTAGCACTGATATTTGGACCAGTTATGCTGCAAGGATTATGGTTCTATCTATTGTTCCAT TTTTAATTGTTCAATTACCACAAGCTCTCGATTCAACTTCTGGAAGACACTTGGCTGTTTTGATTGCTCTTATCGTCTCT GTCTGTTTATTGATTTCTTATTGCCTTTACCAGGTAGTTTTCTTTTTATGGTATACTTGCTCCTCTGCATTACAATAGGT GTTTCTTCATCAACTAGCATGATTTATTTAAACTCTGATGGTTCACATGATCCCTTTTTAATGCTATTGTTTGGCACTTT CAGCAACTTCATGACTGGATGAAATTTGACTCCTGTTAAACTTCTCGCCAATATATTTGCATCTTTCAGAAATTGAGAAA ATAAAAAAATTGTGCAGATTTTTCAGCCCTGGATACAAAGGAGAAAACTGGAATATATTGAACACAAGCATGTTATTTTA GGATTTTTGAAACATTTGAAGATGCGTTCATTAGGAAGGTTGTTGAGAGAAGATGGTCAACCTGATACAGAAGTTATTAA AAAGTAAGTCTATCTCTGTTTTGACTTGAGATTTGAGAAGTTTGCTAGAATCGTTTTATATGTTTTTGGTTGTCACTGAC TTCATTTTCACATATCCAGGTTGTTTACAACAATTGATGAAAATAAAGATGGCAGTCTTACTCATGGTGAACTGAGAGCA CTGGTTGTTGGAATTCAATTTGAGGAAATTGATCTGGATCATGATGATGCTGTGAAAAGAATAATGGTGGATTTCGATAC TTCTAATAATCAACTTATTGATGAAGAAGAATTTGTTAGTGGTGTCTGTAGATGGCTTCAAAGGGCCAGGGGTGCTCGAG TTGCATCCGGTGATGCTGGTCCACACACAATGAAGTTTTTAAGTGATTATCACACAGTAAGTTGTGCATTGCTTAACTTC CTGAACATGTTCCTTTTGGTGCTTAAGGCTAACTGGGATTTGTGCACAGGAAACAAAGATGGAACACGATCTTCTGGATG TGGGAGTGGGAGGTCAGAGTGAAGAAGTTGCTGAGGGTGTTGAGAATGCAAGATGGACTTCAACCAAAGCAGTACTGTTA CTGCTACTTGGTGCCATTATTGCTGCTGCTTTTGCTGATCCGCTGGTCGATGCAGTCGATAACTTTTCAGAGGCTACAAC TATTCCTGCTTTCTTCATTTCCTTCATTTTTCTTCCTTTAGCAACCAATTCAAGTGAAGCAGTGTCTGCAATAATATTTG CTAGTCGTGATAAGAGACAAACAGCCTCGTTAACATTTTCTGAGGTTTGTTTACTTGCCTCATGCTTTTGGTGTCTTTTA GGCATTAGGATGCATGAATTTAGTATAAACTGCATAGCAATGTATGCTGCTGGATAGGTCCTTCCATGTTCTCTCAAAGA CTCAAAACAATATAATACATATTCCTGTAGAAAAATATATTTTAAGGATGCAATTGGGAGCGGACAATAGTAAGTAGTAA CGCTATGGGGGAGTCGATCTGAAACCGTACTTTCCTAAATCCTACTACAGCTACTTCATATTCTCTTTAGTGATATCTTT TGACCAGACTTTCGGGTTGGGAAGATCAGAAATTCCTAAGCCTTGATTTTCATAGCCGTATTTAGCTGTATGAATGGCTA CAGTGATTAAAAATGATAATTGTAATTCAACTTGTTGGCATCAGCATATTTGTTGTGTTCATGGTTACTGCATTGTATAT TTTCTGACCCTATCAATTCAATGGTGGCTGCATGCCCTGGCCTTTCAAATTACTGGTATCCCTGGGAATTAATAGTAATG GCTGTGATGATTGCCGCAGTAGGACTGGAAGACTAGCAGTTTTTGTCAGTTAATTGGTTTGTTTCCAAACATAGGTGGTC TTTGGGATTTCTTGCGTGGTGGTTTGAAGCTTTATGACTTAATAATGGTTAATTCTTGTTATTTTGGGATACATTAAGAG GGAACAACGTTAATTTTGGCCATTAACATAGTCATGGTGTTTTTTTTTCTTGTCCTTTAACATGCTTCTGTTTCATTAAA CATTGTGTTGTCCAACACATGAACACCTCTTTGACAGGTGGATTGTATAAAGTATACACCTCTCTATAGTAATTAATTAC TCTAATATTTTTTTCTTAGGATTAGTAAGGTATTTAAAAATGTTTTCCATTGTTTTTGCAGATATATGGTGCAGTGACAA TGAATAATGTGCTTTGCCTATCAGTCTTCTTGGCGCTTGTTTACGCGAGGGGATTGACTTGGGACTTCTCTTCAGAAGTG TTGGTTATTTTCATTGTTTGCATTGTCATGGGTGTCTTCGCCAGTTTCCGCACCGTCTTTCCTCTATGGACATCTATACT GGCCATACTTCTCTATCCCTTCTCCCTGGCATTAGTATATGTTCTTGATTATGTTTTTGGTTGGTCATAGACCAAGTAGT GTTTCATATGTTTCTGTACTGGTGTGGTTCTTAACCGTCTTGGGGTGTATGGATATTATAGTTCTTTGTGAGAAACTACA GTGTTGTTGACTTCTGCTTAGTTTGGTGGAATTAAACATCCGTTGAGAACGGTTGAGTGGGTACAGTTTTGACTCTGAGC TCATGAGGAGAGCAATCATAAAAATAAATCATTGTTAAAAATTATTGTGTAGTTAGTTTTGTCATGCATGCGATTGTGTT TTGAATCTCATCACTGCAAAACATGTGAAAGAAATGAGAAGAAAATAACAAGAAAATGGAGGGCAAAGTCTAAGTCCTTT TTCATGGCTTAGATGTGACTGTTGGAAGGGATGCAATTTGTTTGAGATAGGTTTTGCACTTCTAGCTGTCATGGTGTCAT TTTCTTACTTATGTCAATGAAAGCAACCTTGACTTGTTGATCTGCTGTGTGTTCTTCTAAAATTGTCTTCTAAGCTGCAT TCTGATGTCTTCTGTATGTGTCCAAAACCTTGAAATGTTTCATAGATACTAGCCTAAGAGGTCCATAGATATAACTTTAA TTATCTCGAGTTTGTAGAATGCTCAGAAGCCTGACCCTTCTGATGAATAACTTTTTTTTTTATCCTGACCTTCTGATGGT ATTTCACAAGAGTGATGCTTCATTCAAAATCCGATATCCAATTAAATCTTCCTTCTTATTTGCATTTGATGGGGTCTTAT ATCTCTTGTTTTATCTTTAGAAGTCTTTTTACAATCAAGTTTTCTTCAAATGATGTGAACTTTTGTTCCATAGCCTTCTA ATGAGTTCTTCAGCTTTTTAATTTTTACGAACCTATTTCCTCTTTCCTCTCAAGTCTCAAGCAATCTGAAGGACGACAAA CATT
CDS sequence (LotjaGi3g1v0154400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTCTCTCTTCCCCTTCCCACCGCACCCTCTTCATCTTCTTCCTTCTGATCCTCTGCGGTCACACCCACGCTCGCTT CTTCACTCCTCTTGATCCGGTTTCAGACGGTGGCTGGAGCAGCATCATTCGCCTCCCCACGGCGGAGGAATCCACCTGTG AGCAGACCTACGGCTTCTTACCCTGCACCACCACCGTGCTTGGAAACTTGTTCCTCATTCTCATCTATGGCTTCCTCATG TTCAAAGCCGCTACGTTTTTATCCAACGGTAGTGAGCTCTTGCTTGAGATCTTGGGTCCCGGCATTGTTGGTGGCTTGTT TCTTCCCATTCTCGGTGCTCTCCCTGATGCCATGCTCATTCTCGTGTCTGGGCTTTCTGGGAGTAAAGAAACTGCTCAGA GTCAGGTATCTGTTGGAATGGGGCTGCTAGCTGGGTCAACAGTGCTGCTTCTCACTATAATATGGGGAACCTGTGTAATT GTTGGCAAGTGTGACATTGAGGGTACAATTGCAATTGATTCACAAGACACCCGGGGATTTAGTTTAACTGGTTCTGGTGT TAGCACTGATATTTGGACCAGTTATGCTGCAAGGATTATGGTTCTATCTATTGTTCCATTTTTAATTGTTCAATTACCAC AAGCTCTCGATTCAACTTCTGGAAGACACTTGGCTGTTTTGATTGCTCTTATCGTCTCTGTCTGTTTATTGATTTCTTAT TGCCTTTACCAGATTTTTCAGCCCTGGATACAAAGGAGAAAACTGGAATATATTGAACACAAGCATGTTATTTTAGGATT TTTGAAACATTTGAAGATGCGTTCATTAGGAAGGTTGTTGAGAGAAGATGGTCAACCTGATACAGAAGTTATTAAAAAGT TGTTTACAACAATTGATGAAAATAAAGATGGCAGTCTTACTCATGGTGAACTGAGAGCACTGGTTGTTGGAATTCAATTT GAGGAAATTGATCTGGATCATGATGATGCTGTGAAAAGAATAATGGTGGATTTCGATACTTCTAATAATCAACTTATTGA TGAAGAAGAATTTGTTAGTGGTGTCTGTAGATGGCTTCAAAGGGCCAGGGGTGCTCGAGTTGCATCCGGTGATGCTGGTC CACACACAATGAAGTTTTTAAGTGATTATCACACAGAAACAAAGATGGAACACGATCTTCTGGATGTGGGAGTGGGAGGT CAGAGTGAAGAAGTTGCTGAGGGTGTTGAGAATGCAAGATGGACTTCAACCAAAGCAGTACTGTTACTGCTACTTGGTGC CATTATTGCTGCTGCTTTTGCTGATCCGCTGGTCGATGCAGTCGATAACTTTTCAGAGGCTACAACTATTCCTGCTTTCT TCATTTCCTTCATTTTTCTTCCTTTAGCAACCAATTCAAGTGAAGCAGTGTCTGCAATAATATTTGCTAGTCGTGATAAG AGACAAACAGCCTCGTTAACATTTTCTGAGATATATGGTGCAGTGACAATGAATAATGTGCTTTGCCTATCAGTCTTCTT GGCGCTTGTTTACGCGAGGGGATTGACTTGGGACTTCTCTTCAGAAGTGTTGGTTATTTTCATTGTTTGCATTGTCATGG GTGTCTTCGCCAGTTTCCGCACCGTCTTTCCTCTATGGACATCTATACTGGCCATACTTCTCTATCCCTTCTCCCTGGCA TTAGTATATGTTCTTGATTATGTTTTTGGTTGGTCATAG
Protein sequence (LotjaGi3g1v0154400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSLSSPSHRTLFIFFLLILCGHTHARFFTPLDPVSDGGWSSIIRLPTAEESTCEQTYGFLPCTTTVLGNLFLILIYGFLM FKAATFLSNGSELLLEILGPGIVGGLFLPILGALPDAMLILVSGLSGSKETAQSQVSVGMGLLAGSTVLLLTIIWGTCVI VGKCDIEGTIAIDSQDTRGFSLTGSGVSTDIWTSYAARIMVLSIVPFLIVQLPQALDSTSGRHLAVLIALIVSVCLLISY CLYQIFQPWIQRRKLEYIEHKHVILGFLKHLKMRSLGRLLREDGQPDTEVIKKLFTTIDENKDGSLTHGELRALVVGIQF EEIDLDHDDAVKRIMVDFDTSNNQLIDEEEFVSGVCRWLQRARGARVASGDAGPHTMKFLSDYHTETKMEHDLLDVGVGG QSEEVAEGVENARWTSTKAVLLLLLGAIIAAAFADPLVDAVDNFSEATTIPAFFISFIFLPLATNSSEAVSAIIFASRDK RQTASLTFSEIYGAVTMNNVLCLSVFLALVYARGLTWDFSSEVLVIFIVCIVMGVFASFRTVFPLWTSILAILLYPFSLA LVYVLDYVFGWS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 25 | 25 | - | – | |
| SignalP_EUK | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 9 | 9 | - | – | |
| Phobius | 10 | 20 | 11 | - | – | |
| TMHMM | 12 | 29 | 18 | - | – | |
| PANTHER | 13 | 572 | 560 | 5.0E-250 | – | |
| PANTHER | 13 | 572 | 560 | 5.0E-250 | – | |
| Phobius | 21 | 25 | 5 | - | – | |
| Phobius | 26 | 57 | 32 | - | – | |
| TMHMM | 57 | 79 | 23 | - | – | |
| Phobius | 58 | 81 | 24 | - | – | |
| Pfam | 70 | 246 | 177 | 1.5E-7 | ||
| Phobius | 82 | 92 | 11 | - | – | |
| TMHMM | 92 | 114 | 23 | - | – | |
| Phobius | 93 | 114 | 22 | - | – | |
| Phobius | 115 | 133 | 19 | - | – | |
| Phobius | 134 | 161 | 28 | - | – | |
| TMHMM | 140 | 162 | 23 | - | – | |
| Phobius | 162 | 194 | 33 | - | – | |
| TMHMM | 195 | 214 | 20 | - | – | |
| Phobius | 195 | 212 | 18 | - | – | |
| Phobius | 213 | 223 | 11 | - | – | |
| TMHMM | 224 | 246 | 23 | - | – | |
| Phobius | 224 | 246 | 23 | - | – | |
| Phobius | 247 | 418 | 172 | - | – | |
| Gene3D | 269 | 369 | 101 | 1.2E-10 | – | |
| SUPERFAMILY | 286 | 359 | 74 | 2.87E-11 | ||
| ProSiteProfiles | 286 | 321 | 36 | 11.054 | ||
| Pfam | 289 | 353 | 65 | 2.4E-8 | ||
| SMART | 290 | 318 | 29 | 0.2 | ||
| CDD | 291 | 355 | 65 | 3.64835E-7 | ||
| ProSitePatterns | 299 | 311 | 13 | - | ||
| ProSiteProfiles | 326 | 361 | 36 | 8.014 | ||
| SMART | 330 | 358 | 29 | 11.0 | ||
| ProSitePatterns | 339 | 351 | 13 | - | ||
| Phobius | 419 | 438 | 20 | - | – | |
| TMHMM | 419 | 438 | 20 | - | – | |
| Pfam | 419 | 563 | 145 | 6.6E-14 | ||
| Phobius | 439 | 449 | 11 | - | – | |
| Phobius | 450 | 476 | 27 | - | – | |
| TMHMM | 453 | 475 | 23 | - | – | |
| Phobius | 477 | 487 | 11 | - | – | |
| TMHMM | 488 | 510 | 23 | - | – | |
| Phobius | 488 | 511 | 24 | - | – | |
| Phobius | 512 | 522 | 11 | - | – | |
| TMHMM | 515 | 537 | 23 | - | – | |
| Phobius | 523 | 543 | 21 | - | – | |
| TMHMM | 542 | 564 | 23 | - | – | |
| Phobius | 544 | 549 | 6 | - | – | |
| Phobius | 550 | 569 | 20 | - | – | |
| Phobius | 570 | 572 | 3 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi3g1v0154400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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