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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0156900 |
| Transcript ID | LotjaGi3g1v0156900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | tRNA dimethylallyltransferase; TAIR: AT5G20040.1 isopentenyltransferase 9; Swiss-Prot: sp|Q9C5J6|IPT9_ARATH tRNA dimethylallyltransferase 9; TrEMBL-Plants: tr|I1M325|I1M325_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0156900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:21455108..21463625) extracted from Lotus japonicus Gifu genome v1.2.
CTTAAAGGAACGCTGCCTTGGGCTTGCCTGAAAACGCCGAAGATGATTAACAATGGAGTATGCAGCCTCCGCACATGCCT CCGTCTCCCGGAGAGACCCCTATTCCGAGCATCTCCGCTCTCATTCAGTCGGCGGCTGCGGTTTATCGCCACCGCAGCCG AAACGAAGAAGAAAGAGAAGGTGATAGTCATTTCTGGACCTACCGGTTCCGGCAAGAGCCGCCTCGCAATGGAGCTCGCA AAGCGCCTCAATGGCGAAATCGTCAGTGCCGACTCTGTCCAGGTACGTGCACATTCTAACAAACAAAGCTCTATTCGTAG CGCTGCTTCTTCTTCTTCTCGCGTTGCTGCTCTGCGTATGAAGTGTTAGTAGCAGGCTTGTTAATAGCGCGCTATAGCGG CGCAATAGCCTATAGCCTAGCGCCCTAGGGTTCACCGCTACTCAACTATTCACCGCTATTTCCCGCTATAGCGCTCGAAA TAGCGTTTTTTGGGCTTGCCGCGACACCACGCTATATCCGCATTTAACAAGTTCGTGTAGGGTTTTAGGCTCCAAGGGTA TTGAAAAACACTGTTCAGCCAAATTATGGATACTGAAGTTTGTTGAGATGTTTGCTAATTTTTATTTTTTCTCTGGAAAT GGTATTCTTGTTTTAAATTGTTGCATGATAGTAATTGGTAAGTGAAAAATCAGTTGTTAGAAGTCTTGCATTGGCTAGAG ATATGACATAGTAACACACTGACATAGATATAGTTTATAAAGGGTATAACAAGTCTCGACTCTTGAGCTAGCTTTTAGGT TGAGTCAGGTCTCCCACTTTCTAATATCAGTAATGGGGATGCTACAAGGTTTCATGAAAGTTTTTTGGATATGGAATGAT ATTTTTCTTGTAATTGTAAATTAAAGTTGCATAGCAGCATAGCGCTTATCCATGAATTTATTTGGAAGCTTATTTACATA AGCTCAAGAGTTTATAGCTATGTCATAAGTTATTTCTTATGAGTTTAATTAAGTGCTTATAAGATAAGTCCGAAAAGGAT TAACAAAAACTCTTCCAAACCCGATAATGGAGCAAGTATTTTCTTTTATTGATTCAATTGGATTCTTTGGCTTGTATTGC AGGTTTATCAGGGTCTTGATATTGGATCTGCGAAGCCTTCCTTAGATGATAGAAAGGTGTGTGTAATTGTGAAGAGATGT TTTATTTTACATTGGCCTCTGTTTGAGATGTATGGACTTTATTGCTTGCAATGTGACTTGGGTTATAAGTATTAGGATTT CCTATTTTGCTTGATTAATCACGTTGGCATCCTTGTATCTAGTTTTTCACTATTGTTTTGTTTGTTGTTCTTGTTAGGAG GTACCGCATCATCTTGTTGATATACTGCACCCATCTGAAGGTGTGTTTTGCCGATGGACTGAAATTTAATTGTTGAAGCA TAAATTTGAATATGGTTTTCTTGAGATTGATTTTTCTGTTGTTGAATTTTTGAATGACATTTATTTTCTCCAATTAAAAC TAATTATTATTTATCAGACTATTCTGTTGGGCAGTTTTTTGAAGATGCAAGGCAAGCTACAAAATGTATTTTTGACAAAG GCCGTGTTCCCATAGTTGTTGGGGGCACTGGATTGTATTTAAGATGGTATGTGTTTTACTGTTACCTGTTCTAAGTTTGT TGACTAGTTTTTCTTTCAAATGGAACTCCTTAATTATTGCATAGTGGTTGTGTGATGTTTCTGTAACATTAGTAAGAGAA CATAAATAGGAAATGAAATCTGTTTTTCATATTTCTGCAACCTGCTGATGGAATCATTCATTTAAATAGCAATCTCACGG ATATTTATGTACTTAATAATAGGGAGAAAATTAACAGGGGTGGAAGTAGCATGGTTAGACACTAATATAGTTGGAAAATG TGAGGAAAAAGTAATGCTGACTTAGTTCTGAGTATTTCATAACTTGTGTTCTCGAAGGATATGTACACACTTGTAGTCTA TTATGGTAGTTCACTAATCTTCTTAATGTTCGGTTACCAGTAGGATATACAGGTAAAGGTCTTAATTAGCTTGACTTTTC TAGAATATAAATAAACTTCTGTCAAATGCTGCTGAGTGAGCATCCACTTTATTAGTGAATTTTTACTGTTTTATTTTAAA CCATAATTAAGTTTCTTTTCTGTAAGTTCTTATTGACCATGTTACATGGAACATATACATCAGAGTTCTTTTGTTTGTTC TTTGAAATGAAAGGTTCATATATGGAAAGCCAGATGTGCCTAAAGCCTCTGCAGAGGTTTCATCTCAAGTACATCTGGAA TTAGCCAAACTGCAGAGAAATGAAGACTGGGATGCTGCTGTGCAGTTGGTGGTAAAAGCAGGTGATCCAAAGGCCCAATT TGTGGCATCGAATGATTGGTACCGATTACGTCGTAGCCTAGAGATTATTAGGGTAAGCTTGAAATGTTGTAAGTAAGTTA CACTTAGTCAGTCATGAAACACTAATTCAGAGCTGGCTACTAACCTTTACTGAAACATTAAAAAAAACTCACTTACTATC TTTTCTTTCCTGTCTTTATCTGTCTCAATTGTTGCACATAGGTTCAGATATGAGATTTGAATACAAGCACCATTACATTA CCAAACGTTCACGAGAATATCCAATTTTTTTTTTCCAATGTGGTGCTATCTCTTTCACATGTGCTTAATTGTAACCAACT ACTGAGTGAACTAGCTCTTTTTACCTGAACTTTTCTGTGGATGTATGCTTGAAATGTATGATTTCTTTTGATTACTAAGT TGTCTGAAGTATTTATATATAAATTTACCATTTATTTATATTCTTTTTGAATGGCAGTCTAGTGGATCACCTCCTTCTGC TTTTCGGGTACCATATGAATCTTTCACGGAACAGGATGGTTGTAGTGTTGCTGATGGTTCTGAGCCGTCTCATATGACCA CTTATGGTGATGCAATGGAAACCGACTCATCAAAGTTAGACTACGACTTTTTGTGTTTTTTCCTTTCTAGCAACAGACTT GACCTCTATAAGTCACTTGATTATCGGTGTGAAGATATGCTATTAGGTATATCATGAACTGGAAACACCCATAATTTGCA TGTGAATCTCATGCAATACATTTTGTAGAAAAATCTTCTGTATGCGTATGCATGTGCAAGTTCATTTGTTTTTTCTGTTA TAACAATACATGACATGCTCTTCAATGAGTATTTTACTGCAACTAAAGTCTTCGTTCTCTTTCTGCAGGAAGGCATGGGA TTTTGTTGGAGGCTCAGTGGCTTCTTGATATTGGTCTTCATCCAAACTCCAATTCTGCAACTCGAGCAATTGGTTACAGA CAGGTATACCATTATATTTTTCACATTTACATTTCAATGTTACTACTTGCTTATTTCAAATAATAAAATAGATTTGGTTG AAAGTGATTAAATTATAAAGTTTAATCTTTAAGGTATAGAAAGTGGAAAAAGAAATAAAGAAATACAGTGAATCAAATTG TATTGATATAGTGTGTTGGGTTACAAAAGACAACACTTGCCCTTATTTATGCTAATGGTAGTCTCATAATCCTCATCAAT AGAGAAACTAATTAAAATTCCTAGTCTAAATTAAACTAAACCAAAAAACAAATTAATATAAATAGGGAAAGAAAGAAACT AAAGAACAATCTAGATTGCCCAAAGTTACTCTAAGATGTGATCAATATATTATAATATATTCTCTTATATTACGGAGAGA TCTGCGTGTTGTGTACCACAGTTTGAAGTTCTTTATGATTTAGGAACAAGAAATATTTTGGGCTGAAGATTCTCCAATTT GTTAACGTTATGTTGATATTAGCAATTGTTGATAGCCTATATGATTATGTATGTATTAATTTCATTGTTGTATCTGCTTT ATAAATAGTTGGAGTCATTTTACTTATAATTTTCATTTGCGATTCACTAATTTCAGGGCATGGAGTACTTGCTAACATGC AGAGAGCAAAGGGGTCAGAGTTCAGCTCGAGAATTTTACAAATTCTTGGCTGAATTTCAAAAAGCTTCACGGTAATGCTT TTCTTTTCCCATAAGATTATGGTAGCAGAGCATTTTTTTTTCTTCACTTAAATTTTCTGTATTGATCAACATTGCATATT ATTTGAAATGAATTTCATTTGAATAAATCTTTGTTCAGTTGGTGTTTCTAGTTTCTACTGTGTAAAATATTATCCAGGAA AGTAGATGTTCCGTTTTCTTCTTTATTCCCTGGTGAATGATGTCCAGTGTAGTTGGTTTGGATACAACATTGTGTTATTG GGGAGGACTTTCTGATCCACATTTATGGTGCTATAAGAGTTGTTCTTGATCTGGATTTTTCCTTTGCTACCCTTGTTTTA AGGAGCCTTTCCTGGTTCGATGGACTTTTTTTCTTCAGCTTGCTTCTGGCTTTGGCTCTTGTGAGCGTGGGTTTTTTCAG CAGAGGAGAGATGTCCCGTTGGTGTTGTTGGGGGTTCCTTGTCTGCTCTCTGTTTCAATGCAGATTCGTATGGTTTTGGC ATCCCTTCCTTATCTCCAGGGAGTTGCCTTGGCTCAGATTGCATGGAAGATGTTGCTGTAGTTGCAGCAAGTGTTTGCGG ATCAGGTGAAGCAAGCAATGTTGTCTCAGTTTCTTGCGGGCTGCAGCAGTTTGTTACTTCTCCTGGTGCCTGCATCATTG AGAGGGGTTTGTCTGGAGTTGTGGAGGGGTATACCATTTCGCCTTCAGAGGTTGCTTCTCCTGCTGGTGGCTGCATATTT AAGAAGGGGGAATCTTCATCGTCTGAGGCACCTTTTGCTTCTCTTCCTTGTCGGAGAGGGCGTCCTTAAAAGGTCAAGAG AGGGTGTAAGCCCCGCCAGGTGCCCGCGGCCATCTGTGTGGATTTGGTTGTGGTTGATGGTGGTGAGTTTGTCCCTGGTG CAATTACGCCATCGGTTCCTTTTGCATCTTTGGATCCGGGGAGTGCTCTGGGTGGTGGTTACTGAGTGCGGGCCATTAAA ATTCAAATAACAGTCTGACAAGTACTGGCTAAGGAAGATTTTAGATGATGAGTCCAGTGAGATTTTTTTTTTGATAAAAC TCTCTGATTCTCTAGAATTAGAAAAAATAGGGGAAAACAAAGGTTACCAAGAATATATTGCCCCGTAGAAAAATAGGGGG AAAAATGGCTGATGTATTCCACTTCCTCCCTGATCCCACTGCTCTTCTTAATTGCTCACATTAATAGTCAACTCCATAGA TTCAGCAAAAGCATGGAAGTCTCCCAATCTCTTTCCACAGCAGTTGCAAAATCCTGTGATTCTATGGAGTGATTTCTGGT TCCCTGCTGCCTCATGTAAATGGGTAAATGGAGTTTGAGCCCAAAATATGATAAAATGGCCTAACATACATGGATGATAC AGTTGTTCTTAAATACAAAACTGTGTAATAGATTGGCTCCACTATTTTGCAAGGCCCAACCTTCCCCTTTAGTGCCATGG GCTTGACCCATTCGGTTAGGAGAGGTTCAGCTCTTGTTGTCACCTCTATTGCCGTTACCGAAGTGCCGAACTTTGCAGGA GAACTGTGCTCCGGTGGATTGATAGAACTCTCATATATAGGCTCTTCGGGCCAATTGTCCACACCGACCCAATTATTGAA GTAACTAATCGGAGGCCCAGGATTTGGCAAGTTTACTCTAGAAGAAAAATAGTGAGGTAAAGTGGAGAGAACGAGAGTTA GTTAGAGAACTTAGAGTGCTGGCATGATGCCCATTATTAGGGGGATTCGGGTATATTTGCAGGGAGAGATAAATGATACG GAGGCATGCTTGTGAGTACTTGGTAAGGAGAGAATATCTCTCTGGTAGGAGTCTTAGACTCTAGTATTTACCCCCATTGT AAGAGCTCTTAGCTCACTGATTTCGATATAATCAATATATTTCTGTTTCTGAAATTACCTGGTTATATCACGGATTCTAC GATGGAGGCAGGTCCTACAACATTGGACAAAACCCTTCTTCATTTCATCCTCCTCTCTCTTCCCCGTTGTTACACGACCT GTGACGAACAATTCTGCTGTCATCGTCGCCATAGAGCTCGTTGTTAGGTGGTTTGTCCGGTGGATATTTGGCGATTTCTG GCTTGCAAAGGGGCGTGTTTGGCAGTTTCCGTGGTGACTGCTTGGTCATCTCATTCGATGCCTCCACCGAACATGCTTGA GTAACCGTGCAAACTGCCCCGCTGCTTTGGAATCGCAGGGTACTTAGGTAGACTCACAGTATGACGGTGGCCAGTGCTTG ACGCGCAATTTCGGCCGCCTTGTTCCGTTGAACCCTAAATCGATGTTTTGCAGCCAAATGGTGAATTCATTCTTCTTTTC TCTTTGAAGGTTGCAATTCTGGATTTCCTCCATTGACTAGCCTTCTTGCAATAGTTGGATGAAAACGACTACCTCTGTTG TTCTTCTCACACTTTTCTGATGATGACGTGCGATCCATGACAAATATTGCAGCTGGTTGACTCTGTGACACCACCGCCGC TGCTCACTCTTCTTCCGCTGTGATCTCTGATTCTCTCTGCGGCCTCTCTGCCGCTGCTCGGTCTGCCTCGGTTGCAGCCT CCAATTCTCTTCTTTCTTGTTTCTCCTTTTGCTTTCTTTCATAAAATTCTCTTAACCAGACTGGAAGCAACCTTGAATCC CTCCTTGCTTCCTCTTCCTTCCTTCTTCTCTCATCTTCCTTTCTCCAATCTGCGATTTCTTTCTGCCACTCTCCCAAAAG TGCATGAATTTCCTCCTTCACTTGTGGTGCCAGTATTTTTCTTGCTAGCCATCTGCTTCATATGCTGTTTGTTGTAGGAT CTTCACGGTCAGGGCACCTGCATTGGTGCTCTGATACCAATGTAAGACCCAGCCAAGAACAAGAGCAGAAACGGAATTTA TTTTTATAACAGAGAACTACAACAGTGCTGAGTTTAGCAAGAGTCACGGCTCCTCTCCCTAACCCAATTCCAAAATGATC CAAAAGATGATAATACTCTCTTACTATCCATTTATAGTCTCACTCTCTCACTAACTCACCAACTAAGTGAAACTCCCTCA ACTAACTAACTAACCTATGGGATAACTCCCTCAACTAACTAAACCGTGTTATATATGGGTACGTATCAGTTTCACTCTCT AATTAACTCACCAACTAAGTGAAACTCCCTCAATTAACCAAACCATGTTATATGCTGGTACCTATCAATATCACACATAA ATGATATTATATTTTGACAGGGTTATATAGCATTGCTCTGACATGAGACTTTTCTGCAGGAATTTTGCAAAAAGACAGTT GACATGGTTTCGCAATGAACGTATATACCACTGGCTTGATGCTTCTAAACCTCTGGTATAATTGAATCTTTTGCCTTTGG TATAAATGAACATACAACTCTAGCTTTTTCTTACTTTCAAGTAGGGATAAAAATTGGTCAGCCTCATCGTAAGGTCTCTG GCATAGCCTCCATTAGGCTCACACCATAACATAAATAGGGTCAATTTAAAAAAAAAACCTATTTGCTAAAAATGCTACCA GACAGACATTGGATGTAATACCCAGTGTCTATTATGTTGAGGGGTTTTTAAGAAGCTGTTTATTAAACGTAAGTAGTTGT TTCCATCAGTATATAGTTTTTTTGATATATATATTTTCTTTAGAGGAAAATGTTTGCTATTCTGTTGATCAATCCATTAT TAATGTTTACGTTATGCTGATTTTGAGATGAACAACTCATGCCAGGAAACCGTTCTTAACTTCATTCACGATGCATACAA TTATGGAAATGGAAGTCTTCTTGTGCCTGAACACCTAAGCATGCCGAGAGATATTTCAGATCGCCGGGTAGCTGCTAAAC TTAAGTCTTACCGCTCCAAAAATAGGTACTTCTTTTCCTATACAGAATGAGTAATTTACTGATAAAGACGCAATATTGAT TACTTTCCTTGTTGTTTTCTTATGAAGGCATTTTGTGAACGGGGAAGATTGTTCTCATATACTCAACTGGATAAGAGAGA CTCAAAGGTGAAGGGATGGAAATTTTCGTTTTGCATTCCCTTGAGCTGGCCGGGCATTCATTGGGCTCAATTTTTGTATT ATGAAGCTGAATTTTTATTTTTTTTTTATAAATTTGCTTTCTTGTTTTATCTTTTCTTCAATATTTGTTTTTTGTGGTTC AGCTATATTTAAAAATGATTGCTTCTCCCTTTTTGGGTAGCATGCACGACTTATGTAACCGACCAATAAGAAGTAGAGGA AATGTTTTAGGCCTTGCTTTCTCTTTTACCTTCAAGTGTTAAATTTGGCAACCCATGACCCAATTTGGCAACCCACTTTT AATGCAGTAATTTTATTTTTTTATAACACCCTTGTTGGCTTTACTTTCCGGGATTTGTAATATCAGAATACCGTACGAGT AACTCTCCGAGATTTAAATCTCGGAACACATGCATGGC
CDS sequence (LotjaGi3g1v0156900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTAACAATGGAGTATGCAGCCTCCGCACATGCCTCCGTCTCCCGGAGAGACCCCTATTCCGAGCATCTCCGCTCTC ATTCAGTCGGCGGCTGCGGTTTATCGCCACCGCAGCCGAAACGAAGAAGAAAGAGAAGGTGATAGTCATTTCTGGACCTA CCGGTTCCGGCAAGAGCCGCCTCGCAATGGAGCTCGCAAAGCGCCTCAATGGCGAAATCGTCAGTGCCGACTCTGTCCAG GTTTATCAGGGTCTTGATATTGGATCTGCGAAGCCTTCCTTAGATGATAGAAAGGAGGTACCGCATCATCTTGTTGATAT ACTGCACCCATCTGAAGACTATTCTGTTGGGCAGTTTTTTGAAGATGCAAGGCAAGCTACAAAATGTATTTTTGACAAAG GCCGTGTTCCCATAGTTGTTGGGGGCACTGGATTGTATTTAAGATGGTTCATATATGGAAAGCCAGATGTGCCTAAAGCC TCTGCAGAGGTTTCATCTCAAGTACATCTGGAATTAGCCAAACTGCAGAGAAATGAAGACTGGGATGCTGCTGTGCAGTT GGTGGTAAAAGCAGGTGATCCAAAGGCCCAATTTGTGGCATCGAATGATTGGTACCGATTACGTCGTAGCCTAGAGATTA TTAGGTCTAGTGGATCACCTCCTTCTGCTTTTCGGGTACCATATGAATCTTTCACGGAACAGGATGGTTGTAGTGTTGCT GATGGTTCTGAGCCGTCTCATATGACCACTTATGGTGATGCAATGGAAACCGACTCATCAAAGTTAGACTACGACTTTTT GTGTTTTTTCCTTTCTAGCAACAGACTTGACCTCTATAAGTCACTTGATTATCGGTGTGAAGATATGCTATTAGGAAGGC ATGGGATTTTGTTGGAGGCTCAGTGGCTTCTTGATATTGGTCTTCATCCAAACTCCAATTCTGCAACTCGAGCAATTGGT TACAGACAGGGCATGGAGTACTTGCTAACATGCAGAGAGCAAAGGGGTCAGAGTTCAGCTCGAGAATTTTACAAATTCTT GGCTGAATTTCAAAAAGCTTCACGGAATTTTGCAAAAAGACAGTTGACATGGTTTCGCAATGAACGTATATACCACTGGC TTGATGCTTCTAAACCTCTGGAAACCGTTCTTAACTTCATTCACGATGCATACAATTATGGAAATGGAAGTCTTCTTGTG CCTGAACACCTAAGCATGCCGAGAGATATTTCAGATCGCCGGGTAGCTGCTAAACTTAAGTCTTACCGCTCCAAAAATAG GCATTTTGTGAACGGGGAAGATTGTTCTCATATACTCAACTGGATAAGAGAGACTCAAAGGTGA
Protein sequence (LotjaGi3g1v0156900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MINNGVCSLRTCLRLPERPLFRASPLSFSRRLRFIATAAETKKKEKVIVISGPTGSGKSRLAMELAKRLNGEIVSADSVQ VYQGLDIGSAKPSLDDRKEVPHHLVDILHPSEDYSVGQFFEDARQATKCIFDKGRVPIVVGGTGLYLRWFIYGKPDVPKA SAEVSSQVHLELAKLQRNEDWDAAVQLVVKAGDPKAQFVASNDWYRLRRSLEIIRSSGSPPSAFRVPYESFTEQDGCSVA DGSEPSHMTTYGDAMETDSSKLDYDFLCFFLSSNRLDLYKSLDYRCEDMLLGRHGILLEAQWLLDIGLHPNSNSATRAIG YRQGMEYLLTCREQRGQSSAREFYKFLAEFQKASRNFAKRQLTWFRNERIYHWLDASKPLETVLNFIHDAYNYGNGSLLV PEHLSMPRDISDRRVAAKLKSYRSKNRHFVNGEDCSHILNWIRETQR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 35 | 446 | 412 | 3.4E-194 | – | |
| PANTHER | 35 | 446 | 412 | 3.4E-194 | ||
| TIGRFAM | 47 | 224 | 178 | 4.7E-50 | ||
| Hamap | 47 | 385 | 339 | 25.722 | ||
| SUPERFAMILY | 47 | 175 | 129 | 6.12E-19 | ||
| Pfam | 80 | 369 | 290 | 8.5E-60 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | TRNA processing | The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group. |
Expression pattern of LotjaGi3g1v0156900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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