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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0164800 |
| Transcript ID | LotjaGi3g1v0164800.3 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cyclic nucleotide-gated channel; TAIR: AT2G28260.1 cyclic nucleotide-gated channel 15; Swiss-Prot: sp|A0A072VMJ3|CN15C_MEDTR Protein CNGC15c; TrEMBL-Plants: tr|A0A0L9UNQ9|A0A0L9UNQ9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0164800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:22441091..22445273) extracted from Lotus japonicus Gifu genome v1.2.
TTATAAGCTTTTAACAAGGAAATTAATGTTCTAGGCATGAAGATGATCCTGAAGTAGAAAAGTTCCCTTCAACTAGCGGT GAAAGTGGGATTAAGATTAAATACAACATTGATGGAACAAAAATACCTGAGCATAGTTCCAAAAGGGCTCAAAAGAGGGT AGCAGGGAAGACAGGGAAGTTCTTGAAAGCAAGAGTACTGTCAAGAGTGTTCTCAGAGGACTGCGAGAGAGTGAAGAGAA GGGTGTTAGATCCTCGCGGACAAACAATCCACCGTTGGAACAAGATTTTCTTAATAGCATCATTAGTGTCTTTGTTTGTA GACCCGTTGTTCTTTTATTTGCCAGTGGTTCAAGATGAAGTGTGCATAGACATTGGAACAACTCTTGAAGTTATCCTTAC AGTTGTTAGATCAGTTGGGGATGTGTTTTACATGATTCAGATTATGATGAAGTTTCGTACAGCTTATGTTGCTCCTTCTT CACAAGTATTTGGGAGAGGAGAACTTGTTCTAGGCTATTCTAAGATTGCTGTTAGGTACCTCAGAAAGGGATTCTGGTTA GACTGTGTAGCTGCATTGCCCCTTCCTCAGGTACCTCACTCTAAAATCTTCTTTAGTTTAATCAATATGATGATACTTTT ACGAATCAAGATCTTCTGTCCTCGTTTGGTGTCCCCTTATATGTCCCACTAATAAAATTGTGTTATGTCAATTAAAAAAT GGTATGAATATGACGGTTATTACCTTATTACATGTGTGTTGGTGGGTCAGAGAAAGGGTCATCAAATTGGGATAGAAGAT TTCAACCCTTAAGGGGCTGAATAATGAATAGCTCTTCTGTTATGTTTGTTTGTTCCAGGTATTGATTTGGATTATTATCC CAGTTCTTAGGGGTTCAACCATGGCAAACACGAAAAACGTGCTTCGCTTTTTCATCATTTTCCAATATGTTCCAAGACTT TATTTGATTTTCCCACTTTCATCACAAATTGTGAAAGCTACAGGGGTTGTGACAGAAACAGCTTGGGCAGGTGCTGCTTA CAACCTGATGCTTTACATGCTGGCTAGCCATGTAAGTAGAAATACTGCATTTTCTTATTGCTCAAGCAGCTGAAGCATTT TCCTTTTCATCATGTTTATCAAGGGAATTTAGTCTTGAAGATAAAACTTAAAAGTGTTTGGTGGAGACCAAATTTTATTT CCTCACAAGCTAAACTAGAATGTGGTTGAAGTTTTTGCCTAATGTTAACATTATATGACTTAAAAGAGTTAAAAGTACTC CTTCAGTCACATCTTGAGATTTCATCCACCAAGTAAACACTCCATCTACTCTTAGGATGAAAACATGTATTAGTCTTGCA AAAATAAATGTGTATTTGGATTTCTGTTGAACTCAATGCTGATCTACGCTAAAGTCAGAGTGACAAAATCTTGTTTCACC ATTTGTGTGTTGGGATATGTGCTTCTCAAGTGGGAAACCAAACACACTAAGTGCATGTTTCGAAACTCTTGTACAATTGA TTATGAAGTCATAATCAATTCCGGGGAGAAACTTTTGTGAGTAGCTTCTAGATTTCAGAATTGAATATGATGAAAGAAAA GCTGATCCAATTTCTGAAGCGACTGTTATGGATGTTTTAATTCTGTTGGCAAACTATGATTTATATTATATACAATATTG ATAATGCAGACAAATTTTACAAAAGAATAGTACAGAACAATTGAAACACCAAATTTTATTTCTTTTGTTTTGTTTTTTCT AATGGGAATTGGGGAATGTTGTGAATAGGTTTTAGGAGCTTGCTGGTACCTTCTATCAATCGAACGACAAGAAGCATGTT GGAAAAGTGCGTGCAATCTGGAGAATTCATCTTGTCATTATGGATTCTTTGATTGCCATAGGGTTAATGATGCTATCAGG GTGTCCTGGTTTACAGCTAGTAATATCACAGATTTATGTTCACCAAAAGCTGATTTTTATCCCTTTGGTATATATGCTGA TGCTGTGACTTCTCAAGTTACATCCTCTGCATTCTTCAATAAGTACTTCTTTTGTCTCTGGTGGGGTCTAAGAAATCTGA GGTAAGTTTCATGAAACGGTTCTACCTTGTTTTAGCACCTTGATTTGTTCAAAAGATTTTAATTTTAATCCTAATGTTCC AAAATTCTACTCATTTGTCTAGTTCATTTGTGTCATCATGCGGAGCAAAATATAATGCTTTTTTTCTGATTTGAGGGTGC AGTTCTTTGGGCCAAGGACTTTTTACTAGCACTTTTGTTGGAGAAATAATGGTAGCCATTGTTGTTGCAACCCTTGGATT GGTTCTTTTTGCGTTGCTGATTGGTAATATGCAGGTAAAAGCAGTTAAATTATGAGTCTAATTTTCCATCATTCCATAAG GCATACAAATAGAACTTGAAATTTGCAGACATACCTACAATCATTAACAGTTCGCCTAGAAGAGTGGAGAGTAAAAAGAA CTGATACAGAACAATGGATGCATCACAGGCAACTACCTCAAGAACTAAGAGAGTCTGTGCGTAAATATGATCAATATAAA TGGGTAGCTACACGAGGAGTAGATGAAGAAACTATTCTTAAAGGACTTCCATTGGATCTCAGGAGAGACATCAAGCGCCA CCTCTGTCTCGAATTAGTTAGAGGAGTAAGTCATGGGATTAAACTGTGTTCAAGCTAAGCTGATACCATGCCATGAACAA CTAACCCAAAAGCTTAAGTTGTTGGGTGAAAATAGATGAATGATTTTATATTATATTTCTAACGAGCACTGCAACTGAAG TTTTCCATTAACTCATTGTTAACAGGTTCCACTGTTTGATCAAATGGATGAGAGGATGCTAGACGCAATATGTGAAAGGC TAAAGCCTGCATTATGCACTGAGGGAACCTATCTTGTTCGTGAGGATGATCCTGTGAATGAAATGCTCTTCATAATTCGA GGAAACCTAGACTCCTACACTACCAATGGAGGCCGTGCTGGATTCTTCAACTCATGTCGAATCGGCTCAGGTGATTTTTG CGGTGAAGAGCTATTAACATGGGCTTTGGACCCGAGACCGAGTGTGATACTCCCTTCTTCAACTCGAACAGTTAAAGCCA TCTCAGAAGTAGAGGCCTTTGCACTTATAGCTGAAGACCTGAAGTTTGTTGCATCACAATTCAGAAGGCTACACAGCAAA CAACTAAGGCATAAATTCAGGTTTTACTCACACCAATGGAGAACTTGGGCTGCTTGTTTCATTCAAGCTGCATGGAGAAG GCACAAGAAAAGGAAAGGAGTTGCTGAGCTAAGGGCTAAGGAGAATGTGTTAGTTTCTGAGCCTGTAACACCAAAATCTG GTTCAGGTTTTGTTGGGTATCCAACAAGGATGGGTAGAAGCACTAGGAAAAGTGTCAATGTGCATTCTGGGACAAATTCT GGAGTAGTCACTTCTTTTCAGAAGCCAGCAGAGCCAGATTTTTCTGTTGTTGAATAACAATTGTACATTTCCCTTTAGTC TCAGATTGAAACCTTTGAGTTGTGTCTCATTCTCTATACCACCAATAAAATGTTGACATGTTCATTAAAAACCACCATGA AAGTTTGTAACAGCCCGACTCGTGTCTTTTTGAATTGGCACGGTAAGATTTCATTGATGGATCAGAAAATTTAGACCATT TTGGGGTCAAAAAATCTTGATCCCTTACTCTCTTGGACAAGTGTTTTCTTTTAGTATCATTTGTTCATCAAAATTTGAGA TAGGAATTTCTGTAACACAATGAATAACTAGATGAGCTAAGATCTTAAATTTAAAATCTGTTGTCAAGGAAGTCCTTCAT GTGGCTAATTTCCTTCATATCATTCCTTGATATATAGCTAGGAATTCATATGTGGGCTTTTGAGAAACACCATATAATAT ATATGATGTAACTGAAAAAATAAAACAGAAACAACATCATTGCAAGCAATAAAACAGAGATACACCATGATGCACCAAGA AAAAGAAGAATGATAACAGGGCCTCTAGGTGGCATTATGGCAAACCATTTTGGCATCAAACATTCAACGGAAGTCTGACT CACCTATATTCCATCATCAGTCTCCACTTTGAAGTTTCAACACCATGCGAAGGCAACATTTACAACGCCTTATTGGATAG CCCAACATTGCACTCACTCAATT
CDS sequence (LotjaGi3g1v0164800.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAAACACGAAAAACGTGCTTCGCTTTTTCATCATTTTCCAATATGTTCCAAGACTTTATTTGATTTTCCCACTTTC ATCACAAATTGTGAAAGCTACAGGGGTTGTGACAGAAACAGCTTGGGCAGGTGCTGCTTACAACCTGATGCTTTACATGC TGGCTAGCCATGTTTTAGGAGCTTGCTGGTACCTTCTATCAATCGAACGACAAGAAGCATGTTGGAAAAGTGCGTGCAAT CTGGAGAATTCATCTTGTCATTATGGATTCTTTGATTGCCATAGGGTTAATGATGCTATCAGGGTGTCCTGGTTTACAGC TAGTAATATCACAGATTTATGTTCACCAAAAGCTGATTTTTATCCCTTTGGTATATATGCTGATGCTGTGACTTCTCAAG TTACATCCTCTGCATTCTTCAATAAGTACTTCTTTTGTCTCTGGTGGGGTCTAAGAAATCTGAGTTCTTTGGGCCAAGGA CTTTTTACTAGCACTTTTGTTGGAGAAATAATGGTAGCCATTGTTGTTGCAACCCTTGGATTGGTTCTTTTTGCGTTGCT GATTGGTAATATGCAGACATACCTACAATCATTAACAGTTCGCCTAGAAGAGTGGAGAGTAAAAAGAACTGATACAGAAC AATGGATGCATCACAGGCAACTACCTCAAGAACTAAGAGAGTCTGTGCGTAAATATGATCAATATAAATGGGTAGCTACA CGAGGAGTAGATGAAGAAACTATTCTTAAAGGACTTCCATTGGATCTCAGGAGAGACATCAAGCGCCACCTCTGTCTCGA ATTAGTTAGAGGAGTTCCACTGTTTGATCAAATGGATGAGAGGATGCTAGACGCAATATGTGAAAGGCTAAAGCCTGCAT TATGCACTGAGGGAACCTATCTTGTTCGTGAGGATGATCCTGTGAATGAAATGCTCTTCATAATTCGAGGAAACCTAGAC TCCTACACTACCAATGGAGGCCGTGCTGGATTCTTCAACTCATGTCGAATCGGCTCAGGTGATTTTTGCGGTGAAGAGCT ATTAACATGGGCTTTGGACCCGAGACCGAGTGTGATACTCCCTTCTTCAACTCGAACAGTTAAAGCCATCTCAGAAGTAG AGGCCTTTGCACTTATAGCTGAAGACCTGAAGTTTGTTGCATCACAATTCAGAAGGCTACACAGCAAACAACTAAGGCAT AAATTCAGGTTTTACTCACACCAATGGAGAACTTGGGCTGCTTGTTTCATTCAAGCTGCATGGAGAAGGCACAAGAAAAG GAAAGGAGTTGCTGAGCTAAGGGCTAAGGAGAATGTGTTAGTTTCTGAGCCTGTAACACCAAAATCTGGTTCAGGTTTTG TTGGGTATCCAACAAGGATGGGTAGAAGCACTAGGAAAAGTGTCAATGTGCATTCTGGGACAAATTCTGGAGTAGTCACT TCTTTTCAGAAGCCAGCAGAGCCAGATTTTTCTGTTGTTGAATAA
Protein sequence (LotjaGi3g1v0164800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MANTKNVLRFFIIFQYVPRLYLIFPLSSQIVKATGVVTETAWAGAAYNLMLYMLASHVLGACWYLLSIERQEACWKSACN LENSSCHYGFFDCHRVNDAIRVSWFTASNITDLCSPKADFYPFGIYADAVTSQVTSSAFFNKYFFCLWWGLRNLSSLGQG LFTSTFVGEIMVAIVVATLGLVLFALLIGNMQTYLQSLTVRLEEWRVKRTDTEQWMHHRQLPQELRESVRKYDQYKWVAT RGVDEETILKGLPLDLRRDIKRHLCLELVRGVPLFDQMDERMLDAICERLKPALCTEGTYLVREDDPVNEMLFIIRGNLD SYTTNGGRAGFFNSCRIGSGDFCGEELLTWALDPRPSVILPSSTRTVKAISEVEAFALIAEDLKFVASQFRRLHSKQLRH KFRFYSHQWRTWAACFIQAAWRRHKKRKGVAELRAKENVLVSEPVTPKSGSGFVGYPTRMGRSTRKSVNVHSGTNSGVVT SFQKPAEPDFSVVE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 6 | 6 | - | – | |
| PANTHER | 2 | 492 | 491 | 6.5E-266 | – | |
| PANTHER | 2 | 492 | 491 | 6.5E-266 | – | |
| Phobius | 7 | 24 | 18 | - | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| Pfam | 13 | 201 | 189 | 1.4E-17 | ||
| SUPERFAMILY | 17 | 237 | 221 | 1.7E-17 | – | |
| Phobius | 25 | 43 | 19 | - | – | |
| TMHMM | 44 | 66 | 23 | - | – | |
| Phobius | 44 | 66 | 23 | - | – | |
| Phobius | 67 | 160 | 94 | - | – | |
| Phobius | 161 | 188 | 28 | - | – | |
| TMHMM | 166 | 188 | 23 | - | – | |
| Phobius | 189 | 494 | 306 | - | – | |
| Gene3D | 197 | 265 | 69 | 2.0E-14 | – | |
| SUPERFAMILY | 204 | 400 | 197 | 5.8E-34 | ||
| Gene3D | 272 | 392 | 121 | 2.0E-38 | ||
| CDD | 274 | 405 | 132 | 3.17436E-16 | ||
| SMART | 274 | 405 | 132 | 5.3E-11 | ||
| ProSiteProfiles | 274 | 371 | 98 | 12.349 | ||
| ProSiteProfiles | 410 | 438 | 29 | 6.668 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ion channel activity | Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size). | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Ion transport | The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi3g1v0164800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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