Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0164800 |
| Transcript ID | LotjaGi3g1v0164800.5 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cyclic nucleotide-gated channel; TAIR: AT2G28260.1 cyclic nucleotide-gated channel 15; Swiss-Prot: sp|A0A072VMJ3|CN15C_MEDTR Protein CNGC15c; TrEMBL-Plants: tr|A0A151S5I1|A0A151S5I1_CAJCA Putative cyclic nucleotide-gated ion channel 15; Found in the gene: LotjaGi3g1v0164800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:22441777..22445343) extracted from Lotus japonicus Gifu genome v1.2.
TTAAGAGTCTTCAACGTAACAATCAAATGCATTCTTTGAATAACTCAATAAATAAATTTCTTTTTATAGTTTATAAGCTT TTAACAAGGAAATTAATGTTCTAGGCATGAAGATGATCCTGAAGTAGAAAAGTTCCCTTCAACTAGCGGTGAAAGTGGGA TTAAGATTAAATACAACATTGATGGAACAAAAATACCTGAGCATAGTTCCAAAAGGGCTCAAAAGAGGGTAGCAGGGAAG ACAGGGAAGTTCTTGAAAGCAAGAGTACTGTCAAGAGTGTTCTCAGAGGACTGCGAGAGAGTGAAGAGAAGGGTGTTAGA TCCTCGCGGACAAACAATCCACCGTTGGAACAAGATTTTCTTAATAGCATCATTAGTGTCTTTGTTTGTAGACCCGTTGT TCTTTTATTTGCCAGTGGTTCAAGATGAAGTGTGCATAGACATTGGAACAACTCTTGAAGTTATCCTTACAGTTGTTAGA TCAGTTGGGGATGTGTTTTACATGATTCAGATTATGATGAAGTTTCGTACAGCTTATGTTGCTCCTTCTTCACAAGTATT TGGGAGAGGAGAACTTGTTCTAGGCTATTCTAAGATTGCTGTTAGGTACCTCAGAAAGGGATTCTGGTTAGACTGTGTAG CTGCATTGCCCCTTCCTCAGGTACCTCACTCTAAAATCTTCTTTAGTTTAATCAATATGATGATACTTTTACGAATCAAG ATCTTCTGTCCTCGTTTGGTGTCCCCTTATATGTCCCACTAATAAAATTGTGTTATGTCAATTAAAAAATGGTATGAATA TGACGGTTATTACCTTATTACATGTGTGTTGGTGGGTCAGAGAAAGGGTCATCAAATTGGGATAGAAGATTTCAACCCTT AAGGGGCTGAATAATGAATAGCTCTTCTGTTATGTTTGTTTGTTCCAGGTATTGATTTGGATTATTATCCCAGTTCTTAG GGGTTCAACCATGGCAAACACGAAAAACGTGCTTCGCTTTTTCATCATTTTCCAATATGTTCCAAGACTTTATTTGATTT TCCCACTTTCATCACAAATTGTGAAAGCTACAGGGGTTGTGACAGAAACAGCTTGGGCAGGTGCTGCTTACAACCTGATG CTTTACATGCTGGCTAGCCATGTAAGTAGAAATACTGCATTTTCTTATTGCTCAAGCAGCTGAAGCATTTTCCTTTTCAT CATGTTTATCAAGGGAATTTAGTCTTGAAGATAAAACTTAAAAGTGTTTGGTGGAGACCAAATTTTATTTCCTCACAAGC TAAACTAGAATGTGGTTGAAGTTTTTGCCTAATGTTAACATTATATGACTTAAAAGAGTTAAAAGTACTCCTTCAGTCAC ATCTTGAGATTTCATCCACCAAGTAAACACTCCATCTACTCTTAGGATGAAAACATGTATTAGTCTTGCAAAAATAAATG TGTATTTGGATTTCTGTTGAACTCAATGCTGATCTACGCTAAAGTCAGAGTGACAAAATCTTGTTTCACCATTTGTGTGT TGGGATATGTGCTTCTCAAGTGGGAAACCAAACACACTAAGTGCATGTTTCGAAACTCTTGTACAATTGATTATGAAGTC ATAATCAATTCCGGGGAGAAACTTTTGTGAGTAGCTTCTAGATTTCAGAATTGAATATGATGAAAGAAAAGCTGATCCAA TTTCTGAAGCGACTGTTATGGATGTTTTAATTCTGTTGGCAAACTATGATTTATATTATATACAATATTGATAATGCAGA CAAATTTTACAAAAGAATAGTACAGAACAATTGAAACACCAAATTTTATTTCTTTTGTTTTGTTTTTTCTAATGGGAATT GGGGAATGTTGTGAATAGGTTTTAGGAGCTTGCTGGTACCTTCTATCAATCGAACGACAAGAAGCATGTTGGAAAAGTGC GTGCAATCTGGAGAATTCATCTTGTCATTATGGATTCTTTGATTGCCATAGGGTTAATGATGCTATCAGGGTGTCCTGGT TTACAGCTAGTAATATCACAGATTTATGTTCACCAAAAGCTGATTTTTATCCCTTTGGTATATATGCTGATGCTGTGACT TCTCAAGTTACATCCTCTGCATTCTTCAATAAGTACTTCTTTTGTCTCTGGTGGGGTCTAAGAAATCTGAGGTAAGTTTC ATGAAACGGTTCTACCTTGTTTTAGCACCTTGATTTGTTCAAAAGATTTTAATTTTAATCCTAATGTTCCAAAATTCTAC TCATTTGTCTAGTTCATTTGTGTCATCATGCGGAGCAAAATATAATGCTTTTTTTCTGATTTGAGGGTGCAGTTCTTTGG GCCAAGGACTTTTTACTAGCACTTTTGTTGGAGAAATAATGGTAGCCATTGTTGTTGCAACCCTTGGATTGGTTCTTTTT GCGTTGCTGATTGGTAATATGCAGGTAAAAGCAGTTAAATTATGAGTCTAATTTTCCATCATTCCATAAGGCATACAAAT AGAACTTGAAATTTGCAGACATACCTACAATCATTAACAGTTCGCCTAGAAGAGTGGAGAGTAAAAAGAACTGATACAGA ACAATGGATGCATCACAGGCAACTACCTCAAGAACTAAGAGAGTCTGTGCGTAAATATGATCAATATAAATGGGTAGCTA CACGAGGAGTAGATGAAGAAACTATTCTTAAAGGACTTCCATTGGATCTCAGGAGAGACATCAAGCGCCACCTCTGTCTC GAATTAGTTAGAGGAGTAAGTCATGGGATTAAACTGTGTTCAAGCTAAGCTGATACCATGCCATGAACAACTAACCCAAA AGCTTAAGTTGTTGGGTGAAAATAGATGAATGATTTTATATTATATTTCTAACGAGCACTGCAACTGAAGTTTTCCATTA ACTCATTGTTAACAGGTTCCACTGTTTGATCAAATGGATGAGAGGATGCTAGACGCAATATGTGAAAGGCTAAAGCCTGC ATTATGCACTGAGGGAACCTATCTTGTTCGTGAGGATGATCCTGTGAATGAAATGCTCTTCATAATTCGAGGAAACCTAG ACTCCTACACTACCAATGGAGGCCGTGCTGGATTCTTCAACTCATGTCGAATCGGCTCAGGTGATTTTTGCGGTGAAGAG CTATTAACATGGGCTTTGGACCCGAGACCGAGTGTGATACTCCCTTCTTCAACTCGAACAGTTAAAGCCATCTCAGAAGT AGAGGCCTTTGCACTTATAGCTGAAGACCTGAAGTTTGTTGCATCACAATTCAGAAGGCTACACAGCAAACAACTAAGGC ATAAATTCAGGTTTTACTCACACCAATGGAGAACTTGGGCTGCTTGTTTCATTCAAGCTGCATGGAGAAGGCACAAGAAA AGGAAAGGAGTTGCTGAGCTAAGGGCTAAGGAGAATGTGTTAGTTTCTGAGCCTGTAACACCAAAATCTGGTTCAGGTTT TGTTGGGTATCCAACAAGGATGGGTAGAAGCACTAGGAAAAGTGTCAATGTGCATTCTGGGACAAATTCTGGAGTAGTCA CTTCTTTTCAGAAGCCAGCAGAGCCAGATTTTTCTGTTGTTGAATAA
CDS sequence (LotjaGi3g1v0164800.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTCAGATTATGATGAAGTTTCGTACAGCTTATGTTGCTCCTTCTTCACAAGTATTTGGGAGAGGAGAACTTGTTCT AGGCTATTCTAAGATTGCTGTTAGGTACCTCAGAAAGGGATTCTGGTTAGACTGTGTAGCTGCATTGCCCCTTCCTCAGG TATTGATTTGGATTATTATCCCAGTTCTTAGGGGTTCAACCATGGCAAACACGAAAAACGTGCTTCGCTTTTTCATCATT TTCCAATATGTTCCAAGACTTTATTTGATTTTCCCACTTTCATCACAAATTGTGAAAGCTACAGGGGTTGTGACAGAAAC AGCTTGGGCAGGTGCTGCTTACAACCTGATGCTTTACATGCTGGCTAGCCATGTTTTAGGAGCTTGCTGGTACCTTCTAT CAATCGAACGACAAGAAGCATGTTGGAAAAGTGCGTGCAATCTGGAGAATTCATCTTGTCATTATGGATTCTTTGATTGC CATAGGGTTAATGATGCTATCAGGGTGTCCTGGTTTACAGCTAGTAATATCACAGATTTATGTTCACCAAAAGCTGATTT TTATCCCTTTGGTATATATGCTGATGCTGTGACTTCTCAAGTTACATCCTCTGCATTCTTCAATAATTCTTTGGGCCAAG GACTTTTTACTAGCACTTTTGTTGGAGAAATAATGGTAGCCATTGTTGTTGCAACCCTTGGATTGGTTCTTTTTGCGTTG CTGATTGGTAATATGCAGACATACCTACAATCATTAACAGTTCGCCTAGAAGAGTGGAGAGTAAAAAGAACTGATACAGA ACAATGGATGCATCACAGGCAACTACCTCAAGAACTAAGAGAGTCTGTGCGTAAATATGATCAATATAAATGGGTAGCTA CACGAGGAGTAGATGAAGAAACTATTCTTAAAGGACTTCCATTGGATCTCAGGAGAGACATCAAGCGCCACCTCTGTCTC GAATTAGTTAGAGGAGTTCCACTGTTTGATCAAATGGATGAGAGGATGCTAGACGCAATATGTGAAAGGCTAAAGCCTGC ATTATGCACTGAGGGAACCTATCTTGTTCGTGAGGATGATCCTGTGAATGAAATGCTCTTCATAATTCGAGGAAACCTAG ACTCCTACACTACCAATGGAGGCCGTGCTGGATTCTTCAACTCATGTCGAATCGGCTCAGGTGATTTTTGCGGTGAAGAG CTATTAACATGGGCTTTGGACCCGAGACCGAGTGTGATACTCCCTTCTTCAACTCGAACAGTTAAAGCCATCTCAGAAGT AGAGGCCTTTGCACTTATAGCTGAAGACCTGAAGTTTGTTGCATCACAATTCAGAAGGCTACACAGCAAACAACTAAGGC ATAAATTCAGGTTTTACTCACACCAATGGAGAACTTGGGCTGCTTGTTTCATTCAAGCTGCATGGAGAAGGCACAAGAAA AGGAAAGGAGTTGCTGAGCTAAGGGCTAAGGAGAATGTGTTAGTTTCTGAGCCTGTAACACCAAAATCTGGTTCAGGTTT TGTTGGGTATCCAACAAGGATGGGTAGAAGCACTAGGAAAAGTGTCAATGTGCATTCTGGGACAAATTCTGGAGTAGTCA CTTCTTTTCAGAAGCCAGCAGAGCCAGATTTTTCTGTTGTTGAATAA
Protein sequence (LotjaGi3g1v0164800.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIQIMMKFRTAYVAPSSQVFGRGELVLGYSKIAVRYLRKGFWLDCVAALPLPQVLIWIIIPVLRGSTMANTKNVLRFFII FQYVPRLYLIFPLSSQIVKATGVVTETAWAGAAYNLMLYMLASHVLGACWYLLSIERQEACWKSACNLENSSCHYGFFDC HRVNDAIRVSWFTASNITDLCSPKADFYPFGIYADAVTSQVTSSAFFNNSLGQGLFTSTFVGEIMVAIVVATLGLVLFAL LIGNMQTYLQSLTVRLEEWRVKRTDTEQWMHHRQLPQELRESVRKYDQYKWVATRGVDEETILKGLPLDLRRDIKRHLCL ELVRGVPLFDQMDERMLDAICERLKPALCTEGTYLVREDDPVNEMLFIIRGNLDSYTTNGGRAGFFNSCRIGSGDFCGEE LLTWALDPRPSVILPSSTRTVKAISEVEAFALIAEDLKFVASQFRRLHSKQLRHKFRFYSHQWRTWAACFIQAAWRRHKK RKGVAELRAKENVLVSEPVTPKSGSGFVGYPTRMGRSTRKSVNVHSGTNSGVVTSFQKPAEPDFSVVE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 546 | 546 | 1.1E-280 | – | |
| Phobius | 1 | 40 | 40 | - | – | |
| PANTHER | 1 | 546 | 546 | 1.1E-280 | – | |
| SUPERFAMILY | 2 | 250 | 249 | 7.59E-15 | – | |
| Pfam | 3 | 255 | 253 | 2.9E-18 | ||
| Phobius | 41 | 62 | 22 | - | – | |
| TMHMM | 41 | 63 | 23 | - | – | |
| Phobius | 63 | 73 | 11 | - | – | |
| Phobius | 74 | 91 | 18 | - | – | |
| Phobius | 92 | 111 | 20 | - | – | |
| TMHMM | 111 | 133 | 23 | - | – | |
| Phobius | 112 | 133 | 22 | - | – | |
| Phobius | 134 | 219 | 86 | - | – | |
| Phobius | 220 | 242 | 23 | - | – | |
| TMHMM | 220 | 242 | 23 | - | – | |
| Phobius | 243 | 548 | 306 | - | – | |
| Gene3D | 251 | 319 | 69 | 2.3E-14 | – | |
| SUPERFAMILY | 258 | 454 | 197 | 7.19E-34 | ||
| Gene3D | 326 | 446 | 121 | 2.4E-38 | ||
| SMART | 328 | 459 | 132 | 5.3E-11 | ||
| CDD | 328 | 459 | 132 | 5.24391E-16 | ||
| ProSiteProfiles | 328 | 425 | 98 | 12.349 | ||
| ProSiteProfiles | 464 | 492 | 29 | 6.668 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ion channel activity | Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size). | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Ion transport | The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi3g1v0164800.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…