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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0174400 |
| Transcript ID | LotjaGi3g1v0174400.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT2G27610.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610; TrEMBL-Plants: tr|I1LTU4|I1LTU4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0174400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:24163420..24166504) extracted from Lotus japonicus Gifu genome v1.2.
GTCTTAAAGAATTGAGGTTAGTGAGACTGCTTCACGGTAGGGCTTTGAAGAGTGGGTTTTTCACACACCCTAATGTCCAT ACTGCACTCATGGTGGCATTGATCAAGTGCAAGGAAATGGACGGTGCCTTTCGTCTATTCTCCTTGATGCCCGAGGGTCA AAGCGTGGTGTCATGGACTGCCATGATCAGTGGATACGTGCAGAATGGTGACATTGATCAGGCTATGAACTTGTTTTCCC AAATGAGGAGGGGATATGTGAAACCAAACCATTTCACATACTCTACGATTCTAACTGTTCAAAATGCTGTTTTCATTTCT GAAATACATGCGGAAGTTATCAAAACTAATTATGAGAAATCATCTTCAGTAGGAACTGCACTTTTAGATGCTTATGTTAA GTTAAGAAATATGAATGATGCTATTAAGGTTTTTGAGCTAATTGAAGTGAAGGACATAATAGCCTGGTCAGCAATGCTGG TGGGATATGCACAAACTGGAGAAACCGAAGAAGCTGCGAAATTTTTCTGCCGATTGACGAAGGAGGGGATCGAACCAAAT GAATTTACCCTCTCCAGCATCATTAATGCATGTGCTGCTCCTACAGCAGCAGTGGAACAAGGTAGACAATTCCATGCCTG TGCAATTAAAATGAGATTAAATAATGCTTTATGTGTGAGTAGTGCTCTTGTCACCATGTATGCAAAGAGAGGCAATATTG ATAGTGCATATGATGTTTTCAAAAGGCAAGATGAGAGGGACTTGGTTTCTTGGAACTCAATGATCTCTGGGTATGCACAA AATGGCCAGGCTAAGAAAGCATTAGATGTATTTGAGGAGATGCAAAATCTGAACTTGGACATTGATGCTGTAACATTCAT CGGTGTTATTACTGCCTGCACTCATGCTGGCCTAGTGGACCAAGGCCAATATTACTTCAATGTCATGATCAATGATCATC AGATTATGCCAACAATGGAGCTCTACTCTTGCATGATTGATCTATATAGTCGTGCAGGGATGCTGGAAAAAGCCATGGAT ATCCTAAATGGGATGTCATTTCCCCCAGGTGCAACTGTGTGGCGCACTCTCTTGGCAGCTTCTCGAGTGCACCGCAATAT AGAGCTTGGAAAACTTGCTGCTGAAAAACTTATTTCACTTCAGCCACAAGACTCGGCTGCATATGTCCTCTTATCCAATA TGTATGCTGCGTCAGGAAATTGGCAAGAGAAAACCAATGTGAGAAAACTAATGGATAAGAGAAAGGTGAAAAAGGAACCT GGGTATAGCTGGATAGAGGTTAAAAATAAGACATACAAATTCTTAGCCGGTGATTTTTCACATCCTTTCTCAGACCATAT TTACTCAAAACTTTCAGAGTTAAATAACCGGTTGAAGGATGCAGGTTATCAACCTGATACGAACTATGTTTTTCATGATA TTGAAGATGAACAAAAAGAAACTATTCTGTCTCATCATAGTGAAAGGCTGGCCATTGCCTTTGGGTTAATATCTACACAT CCTGGAATTCCAATCCACATTGGGAAGAATCTTCGAGTCTGTGGAGATTGTCATAACTTCATAAAGTTAGTATCACAGGT TGAACAGAGATATATTGTTGTTAGAGATACAAACCGGTTTCACCACTTTAAAGGTGGTGTGTGCTCATGTGGAGACTACT GGTGATGTTTGGGCTATCATATGTTTGCTGAATTTAAAATTTACTCAGAGGATCAAACAGATCATATACATTTAGATACA GATTACATACAATGTAGATGAATTGTGTGGTGTCATTTTGGTAAGCTACTCTTATTCTTAATACAACACCATGTGACTAG TTGTACATAACCTTATTTCTTACTATTTTATGTACATTTTTACTCTTTATTCCTCTTAATAAGTATTATTGTTAAAAATT AAGTTAATCATAATTTTTGTAACAGTGAATGCCAAAACTTTTCAAACCTATAAATTTCACATTTGAAGTTAGTGAATTTA AATTTTGATAAACCATATATATGAAATTAATAAATACAGTTAGCGGTGTTTTTCGATTCACAATTTGTTTAACGATTTAA AAGGTCCTATATTCGTTATTTACGCATATCTTTATTGTCAGAAGTAATATGAAACCATTCATGTGTCCTTACCCAATAGC TTAAGCTTTTGGAATAATTGGTTGTTTGACATGGTATCAAAGCCTCTATGACTAAGTGGTCTAGAGTCCGAATCTTATTG CCCCCATTATTCTAATAAAAAGTTGAATTTCAATACATGGTAGGTGAGTCTGTGCATTATCCACACTTCAAACCCAAGTG GGCTCTTGCGTGAGGGGGCGTGTTAGAAATAATATAAAACCTTTCATGTGTCATTTACCCAACAGCTTAAGGTTTTGGGA TTGATTCTTGACATTTATATATAGAAGTTCAAGTAATTTATTATTCCCCTAAATTTATGTAAGCATTTTGTAAGGAAATT TCACTAATGAAATGCATGTTTTGATGATTTAATTATCATTTTCATTTGTTTATTGATGGAAGCTATGCCTTTTGTTGAAA ACTAATTAGAAATTAGAATATTTACTTTACTAAGAACTAACTATGAATGGGGACCTTACGAATGTTGTGAAGTGAGCAAT GTAAGATTTTTTGGCTGGTTATATGTGTAAATTACTTTTTTCTTTCTCTTGGTCAAGCTATATTATCAGTATATTCTAAA GGGAAAGAAGGAATATCTTATGTTGTGTAGGAAGCTGGAAACGGAGGAAAGTGGTTGGCTGGAAGGCCTTTTTGCTTCGC AATGGAATGGCAAGATTGAAAAGGGAGTAGATTTTACTTGACTGGAATGAACTTGCTGAAAATATGGCAAGTTTCTTCTC GCTTCAACATTTTTTCTTTAGTATTTCCATTCCTTTTTTATACCAGTGGTTTTAGTGAGGGGAAAAGGCTTGTTTGTTGT TGTATAGTTGACAATATAGTTCCTGATGCAGGGCAGCCCACGTTGGAAGTTGGAACATGTAGAGTTTGATATGATCACAA CTACCTTGCATACACAGTTGATAATTTTGGGGGTGAAAGGCTCTC
CDS sequence (LotjaGi3g1v0174400.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGGCATTGATCAAGTGCAAGGAAATGGACGGTGCCTTTCGTCTATTCTCCTTGATGCCCGAGGGTCAAAGCGTGGT GTCATGGACTGCCATGATCAGTGGATACGTGCAGAATGGTGACATTGATCAGGCTATGAACTTGTTTTCCCAAATGAGGA GGGGATATGTGAAACCAAACCATTTCACATACTCTACGATTCTAACTGTTCAAAATGCTGTTTTCATTTCTGAAATACAT GCGGAAGTTATCAAAACTAATTATGAGAAATCATCTTCAGTAGGAACTGCACTTTTAGATGCTTATGTTAAGTTAAGAAA TATGAATGATGCTATTAAGGTTTTTGAGCTAATTGAAGTGAAGGACATAATAGCCTGGTCAGCAATGCTGGTGGGATATG CACAAACTGGAGAAACCGAAGAAGCTGCGAAATTTTTCTGCCGATTGACGAAGGAGGGGATCGAACCAAATGAATTTACC CTCTCCAGCATCATTAATGCATGTGCTGCTCCTACAGCAGCAGTGGAACAAGGTAGACAATTCCATGCCTGTGCAATTAA AATGAGATTAAATAATGCTTTATGTGTGAGTAGTGCTCTTGTCACCATGTATGCAAAGAGAGGCAATATTGATAGTGCAT ATGATGTTTTCAAAAGGCAAGATGAGAGGGACTTGGTTTCTTGGAACTCAATGATCTCTGGGTATGCACAAAATGGCCAG GCTAAGAAAGCATTAGATGTATTTGAGGAGATGCAAAATCTGAACTTGGACATTGATGCTGTAACATTCATCGGTGTTAT TACTGCCTGCACTCATGCTGGCCTAGTGGACCAAGGCCAATATTACTTCAATGTCATGATCAATGATCATCAGATTATGC CAACAATGGAGCTCTACTCTTGCATGATTGATCTATATAGTCGTGCAGGGATGCTGGAAAAAGCCATGGATATCCTAAAT GGGATGTCATTTCCCCCAGGTGCAACTGTGTGGCGCACTCTCTTGGCAGCTTCTCGAGTGCACCGCAATATAGAGCTTGG AAAACTTGCTGCTGAAAAACTTATTTCACTTCAGCCACAAGACTCGGCTGCATATGTCCTCTTATCCAATATGTATGCTG CGTCAGGAAATTGGCAAGAGAAAACCAATGTGAGAAAACTAATGGATAAGAGAAAGGTGAAAAAGGAACCTGGGTATAGC TGGATAGAGGTTAAAAATAAGACATACAAATTCTTAGCCGGTGATTTTTCACATCCTTTCTCAGACCATATTTACTCAAA ACTTTCAGAGTTAAATAACCGGTTGAAGGATGCAGGTTATCAACCTGATACGAACTATGTTTTTCATGATATTGAAGATG AACAAAAAGAAACTATTCTGTCTCATCATAGTGAAAGGCTGGCCATTGCCTTTGGGTTAATATCTACACATCCTGGAATT CCAATCCACATTGGGAAGAATCTTCGAGTCTGTGGAGATTGTCATAACTTCATAAAGTTAGTATCACAGGTTGAACAGAG ATATATTGTTGTTAGAGATACAAACCGGTTTCACCACTTTAAAGGTGGTGTGTGCTCATGTGGAGACTACTGGTGA
Protein sequence (LotjaGi3g1v0174400.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVALIKCKEMDGAFRLFSLMPEGQSVVSWTAMISGYVQNGDIDQAMNLFSQMRRGYVKPNHFTYSTILTVQNAVFISEIH AEVIKTNYEKSSSVGTALLDAYVKLRNMNDAIKVFELIEVKDIIAWSAMLVGYAQTGETEEAAKFFCRLTKEGIEPNEFT LSSIINACAAPTAAVEQGRQFHACAIKMRLNNALCVSSALVTMYAKRGNIDSAYDVFKRQDERDLVSWNSMISGYAQNGQ AKKALDVFEEMQNLNLDIDAVTFIGVITACTHAGLVDQGQYYFNVMINDHQIMPTMELYSCMIDLYSRAGMLEKAMDILN GMSFPPGATVWRTLLAASRVHRNIELGKLAAEKLISLQPQDSAAYVLLSNMYAASGNWQEKTNVRKLMDKRKVKKEPGYS WIEVKNKTYKFLAGDFSHPFSDHIYSKLSELNNRLKDAGYQPDTNYVFHDIEDEQKETILSHHSERLAIAFGLISTHPGI PIHIGKNLRVCGDCHNFIKLVSQVEQRYIVVRDTNRFHHFKGGVCSCGDYW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 23 | 23 | 5.207 | ||
| Gene3D | 1 | 74 | 74 | 4.8E-17 | ||
| PANTHER | 5 | 70 | 66 | 2.2E-94 | – | |
| Pfam | 25 | 68 | 44 | 5.1E-14 | ||
| ProSiteProfiles | 25 | 59 | 35 | 12.31 | ||
| TIGRFAM | 27 | 55 | 29 | 2.3E-7 | ||
| Gene3D | 75 | 187 | 113 | 1.6E-18 | ||
| PANTHER | 79 | 191 | 113 | 2.2E-94 | – | |
| ProSiteProfiles | 91 | 121 | 31 | 6.511 | ||
| TIGRFAM | 96 | 123 | 28 | 0.003 | ||
| Pfam | 121 | 169 | 49 | 1.5E-10 | ||
| ProSiteProfiles | 122 | 156 | 35 | 11.641 | ||
| TIGRFAM | 125 | 158 | 34 | 5.0E-6 | ||
| PANTHER | 175 | 391 | 217 | 2.2E-94 | – | |
| ProSiteProfiles | 193 | 223 | 31 | 6.237 | ||
| Pfam | 198 | 219 | 22 | 0.4 | ||
| Gene3D | 199 | 411 | 213 | 6.0E-36 | ||
| SUPERFAMILY | 203 | 379 | 177 | 2.21E-5 | ||
| ProSiteProfiles | 224 | 258 | 35 | 12.386 | ||
| Pfam | 224 | 270 | 47 | 1.1E-12 | ||
| TIGRFAM | 226 | 259 | 34 | 7.1E-9 | ||
| ProSiteProfiles | 259 | 289 | 31 | 6.5 | ||
| ProSiteProfiles | 295 | 325 | 31 | 7.706 | ||
| TIGRFAM | 298 | 322 | 25 | 4.5E-5 | ||
| Pfam | 299 | 322 | 24 | 8.6E-5 | ||
| ProSiteProfiles | 361 | 395 | 35 | 7.3 | ||
| Pfam | 397 | 521 | 125 | 6.4E-43 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi3g1v0174400.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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