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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0176100 |
| Transcript ID | LotjaGi3g1v0176100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT5G48910.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910; TrEMBL-Plants: tr|A0A151RMX8|A0A151RMX8_CAJCA Pentatricopeptide repeat-containing protein family; Found in the gene: LotjaGi3g1v0176100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:24479664..24481724) extracted from Lotus japonicus Gifu genome v1.2.
CGCGGAAGTTAGTTATTTCTGGTTATCATGAGTTCAACCTGTGTTTCTTCACTTCCACTTTCAGTTGCTACAAACCCAAA ATCAACAACGTTGGCATTGGAAAAATGCACAACACTGTCCCAGGTTCGCCAACTCCACGCTCACATCATCAAAACAAACC TCACCACTCACGCATCATGTGTCGCCAAACTCATCCACGCTTTATCTCGGAGCTGCAACCCCTACGACGCGGTTTCGGTA TATGCTCACGCGCTCTCATGCTTCCAGCTGAAGGAGATCGTGTTCTGCGTTCCCTCGGTTCTCAGAGCTTGCGGCAGATC GAGCGCGTTTGAGGAAGGGAAGCAAATCATGGGTTTTGTAGTGAAAACTCAATTGTGGTGTGACCCTTTTGTTGCGAACT CCGTGGTTCGAATGTGCTTGGAGGTTGGTGTCGTTGAGCTTGCGAGATCGGTGTTTGATAAAATGCCTGTGAGGGACTTG ATTTCATGGAATTCTTTGCTCACGGGGTACTTGAGGGCGGGTGAGATTGATATGGCGCGGGAGGTGTTTGAGAAAATGCC GCAAAGGGATTTGGTTTCGTGTAATGCGATGATTGATGGGTATGGGAAGCATGGCGAGTGTGAGCTTGCTGAGGAGGTTT TTAAGGTCTTGAGTGTCAGGGATGTTGTTACTTGGACGAGTATGATTTCAGCTTTTGTTCTTAATCGTCGCCCGAGGGAA GGGTTGTGTTTGTTTAGAGAAATGTTGAGTGAAGGGGTTCAGCCTGATGCCCCTGCTATTGTGAGTGTCCTTTCAGCTAT TGCTGATCTGGGTTTTGTTGAGGAAGGCAAATGGATACACAATTATGTATTAACTAACAAGATACGTCATCAAAGTTTTA GCTTTATTGGATCGGCACTCATAAACATGTATGCAAAATGTGGGCAGATAGAAAATGCTTATCATGTATTCAGGAGCGTT TCTCAGCGGGGAAATGTCGGCGATTGGAATTCTATGATATCTGGACTTTCTTTGCATGGATTGGGTCATGAAGCTATAGA GGTTTTTCTGGAGTTGGAAAGGGCAAAACTTGTTCCTGATGATGTCACTTTCTTGGGGCTTTTGAGTGCTTGCAACCATG AAGGCCTTATGGATGAAGGTCAATTTTACTTTGAAACAATGCAGTTGAAGTACAAGATAGTTCCTAAAATTCAGCACTAT GGGTGCATTATTGACCTTCTTGGTAGAGCAGGTCAGTTAGACGAGGCGCTTGGGGTTATCCGTGACATGCCTTTGGAGCC TGATGTTTTAATTTGGAAGACCATTCTCAGTGCCAGCATGAAGCACAATAACTTTGTAATGGGGCGCAAAGCTGCATTGC GAGCTATAGATTTGGCTCCACAAGATTCAAGTTGCTATGTTCTTCTTTCAAATATATATGCCAAACAAGGAAGGTGGGAT GATGTGACAAAAGTTAGATCAATGATGAGAAACAGGGGAGTAAGAAAGATTCCTGGCTGTAGCTCCATTTTTGTGGATGG TAAAGTTCATGAGTTCCTGGTGGGGAAGGCCATGGATTTGGGGCACAACCAAAACGTTATGTTTAAGTTAGAGGAGGTTG TATCGAGGTTGAAATTGGAGGGATATGAACCTGATCTGAATCAAGTGTTTCTAGATTTTGAAAGTGATGAGAAAGAGAGC CAACTAGTTCTTCACAGTGAGAAGGTGGCTCTTGCCTTTGGACTATTGAGTTTGCCACAGGGCCTTCCCATTCATATAGT GAAGAACTTAAGAATTTGTTGTGATTGTCACACATTTATGCAGCTGGTTTCCAAAATCTACAAACGTCGAATTGTTGTTA GAGATCAAAACCGGTTTCATCATTTTGATAAAGGTTGCTGTTCCTGCAGAAATCATTGGTAACTTTGCTATCATGATGAG TTCTTGCCATTGGTAAATTTGGTTGGAGTTCATAATTTATGTTGTAAATGGAGTAAATATTGTTTTCATCATTGATTGTA AATCGGGAACAGTTAAGCATTTCCTATATCTTTACCTCATTCTTTTCACATTTCCTCCTTC
CDS sequence (LotjaGi3g1v0176100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTTCAACCTGTGTTTCTTCACTTCCACTTTCAGTTGCTACAAACCCAAAATCAACAACGTTGGCATTGGAAAAATG CACAACACTGTCCCAGGTTCGCCAACTCCACGCTCACATCATCAAAACAAACCTCACCACTCACGCATCATGTGTCGCCA AACTCATCCACGCTTTATCTCGGAGCTGCAACCCCTACGACGCGGTTTCGGTATATGCTCACGCGCTCTCATGCTTCCAG CTGAAGGAGATCGTGTTCTGCGTTCCCTCGGTTCTCAGAGCTTGCGGCAGATCGAGCGCGTTTGAGGAAGGGAAGCAAAT CATGGGTTTTGTAGTGAAAACTCAATTGTGGTGTGACCCTTTTGTTGCGAACTCCGTGGTTCGAATGTGCTTGGAGGTTG GTGTCGTTGAGCTTGCGAGATCGGTGTTTGATAAAATGCCTGTGAGGGACTTGATTTCATGGAATTCTTTGCTCACGGGG TACTTGAGGGCGGGTGAGATTGATATGGCGCGGGAGGTGTTTGAGAAAATGCCGCAAAGGGATTTGGTTTCGTGTAATGC GATGATTGATGGGTATGGGAAGCATGGCGAGTGTGAGCTTGCTGAGGAGGTTTTTAAGGTCTTGAGTGTCAGGGATGTTG TTACTTGGACGAGTATGATTTCAGCTTTTGTTCTTAATCGTCGCCCGAGGGAAGGGTTGTGTTTGTTTAGAGAAATGTTG AGTGAAGGGGTTCAGCCTGATGCCCCTGCTATTGTGAGTGTCCTTTCAGCTATTGCTGATCTGGGTTTTGTTGAGGAAGG CAAATGGATACACAATTATGTATTAACTAACAAGATACGTCATCAAAGTTTTAGCTTTATTGGATCGGCACTCATAAACA TGTATGCAAAATGTGGGCAGATAGAAAATGCTTATCATGTATTCAGGAGCGTTTCTCAGCGGGGAAATGTCGGCGATTGG AATTCTATGATATCTGGACTTTCTTTGCATGGATTGGGTCATGAAGCTATAGAGGTTTTTCTGGAGTTGGAAAGGGCAAA ACTTGTTCCTGATGATGTCACTTTCTTGGGGCTTTTGAGTGCTTGCAACCATGAAGGCCTTATGGATGAAGGTCAATTTT ACTTTGAAACAATGCAGTTGAAGTACAAGATAGTTCCTAAAATTCAGCACTATGGGTGCATTATTGACCTTCTTGGTAGA GCAGGTCAGTTAGACGAGGCGCTTGGGGTTATCCGTGACATGCCTTTGGAGCCTGATGTTTTAATTTGGAAGACCATTCT CAGTGCCAGCATGAAGCACAATAACTTTGTAATGGGGCGCAAAGCTGCATTGCGAGCTATAGATTTGGCTCCACAAGATT CAAGTTGCTATGTTCTTCTTTCAAATATATATGCCAAACAAGGAAGGTGGGATGATGTGACAAAAGTTAGATCAATGATG AGAAACAGGGGAGTAAGAAAGATTCCTGGCTGTAGCTCCATTTTTGTGGATGGTAAAGTTCATGAGTTCCTGGTGGGGAA GGCCATGGATTTGGGGCACAACCAAAACGTTATGTTTAAGTTAGAGGAGGTTGTATCGAGGTTGAAATTGGAGGGATATG AACCTGATCTGAATCAAGTGTTTCTAGATTTTGAAAGTGATGAGAAAGAGAGCCAACTAGTTCTTCACAGTGAGAAGGTG GCTCTTGCCTTTGGACTATTGAGTTTGCCACAGGGCCTTCCCATTCATATAGTGAAGAACTTAAGAATTTGTTGTGATTG TCACACATTTATGCAGCTGGTTTCCAAAATCTACAAACGTCGAATTGTTGTTAGAGATCAAAACCGGTTTCATCATTTTG ATAAAGGTTGCTGTTCCTGCAGAAATCATTGGTAA
Protein sequence (LotjaGi3g1v0176100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSTCVSSLPLSVATNPKSTTLALEKCTTLSQVRQLHAHIIKTNLTTHASCVAKLIHALSRSCNPYDAVSVYAHALSCFQ LKEIVFCVPSVLRACGRSSAFEEGKQIMGFVVKTQLWCDPFVANSVVRMCLEVGVVELARSVFDKMPVRDLISWNSLLTG YLRAGEIDMAREVFEKMPQRDLVSCNAMIDGYGKHGECELAEEVFKVLSVRDVVTWTSMISAFVLNRRPREGLCLFREML SEGVQPDAPAIVSVLSAIADLGFVEEGKWIHNYVLTNKIRHQSFSFIGSALINMYAKCGQIENAYHVFRSVSQRGNVGDW NSMISGLSLHGLGHEAIEVFLELERAKLVPDDVTFLGLLSACNHEGLMDEGQFYFETMQLKYKIVPKIQHYGCIIDLLGR AGQLDEALGVIRDMPLEPDVLIWKTILSASMKHNNFVMGRKAALRAIDLAPQDSSCYVLLSNIYAKQGRWDDVTKVRSMM RNRGVRKIPGCSSIFVDGKVHEFLVGKAMDLGHNQNVMFKLEEVVSRLKLEGYEPDLNQVFLDFESDEKESQLVLHSEKV ALAFGLLSLPQGLPIHIVKNLRICCDCHTFMQLVSKIYKRRIVVRDQNRFHHFDKGCCSCRNHW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| Phobius | 4 | 15 | 12 | - | – | |
| Phobius | 16 | 23 | 8 | - | – | |
| Gene3D | 23 | 209 | 187 | 3.3E-27 | ||
| Phobius | 24 | 624 | 601 | - | – | |
| PANTHER | 69 | 179 | 111 | 2.2E-90 | – | |
| ProSiteProfiles | 119 | 149 | 31 | 7.3 | ||
| ProSiteProfiles | 150 | 184 | 35 | 11.926 | ||
| TIGRFAM | 152 | 182 | 31 | 1.3E-6 | ||
| Pfam | 152 | 181 | 30 | 5.7E-7 | ||
| TIGRFAM | 183 | 212 | 30 | 2.4E-5 | ||
| Pfam | 183 | 207 | 25 | 6.3E-6 | ||
| PANTHER | 185 | 279 | 95 | 2.2E-90 | – | |
| ProSiteProfiles | 185 | 211 | 27 | 5.481 | ||
| Gene3D | 210 | 279 | 70 | 3.6E-5 | ||
| ProSiteProfiles | 212 | 246 | 35 | 12.452 | ||
| Pfam | 212 | 249 | 38 | 2.2E-7 | ||
| TIGRFAM | 214 | 248 | 35 | 7.3E-9 | ||
| ProSiteProfiles | 247 | 281 | 35 | 5.316 | ||
| PANTHER | 267 | 481 | 215 | 2.2E-90 | – | |
| ProSiteProfiles | 284 | 314 | 31 | 6.588 | ||
| Gene3D | 285 | 508 | 224 | 1.4E-35 | ||
| Pfam | 289 | 315 | 27 | 0.039 | ||
| ProSiteProfiles | 316 | 350 | 35 | 9.832 | ||
| Pfam | 320 | 346 | 27 | 4.7E-5 | ||
| TIGRFAM | 320 | 351 | 32 | 3.0E-5 | ||
| ProSiteProfiles | 351 | 381 | 31 | 6.686 | ||
| ProSiteProfiles | 387 | 417 | 31 | 7.377 | ||
| TIGRFAM | 391 | 414 | 24 | 0.0023 | ||
| Pfam | 391 | 414 | 24 | 0.0066 | ||
| ProSiteProfiles | 453 | 487 | 35 | 9.416 | ||
| Pfam | 456 | 485 | 30 | 0.17 | ||
| Pfam | 489 | 613 | 125 | 1.7E-32 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi3g1v0176100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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