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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0176800 |
| Transcript ID | LotjaGi3g1v0176800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb family transcription factor APL; TAIR: AT3G04030.3 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q9SQQ9|PHL9_ARATH Myb-related protein 2; TrEMBL-Plants: tr|I1LTV8|I1LTV8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0176800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:24592569..24595643) extracted from Lotus japonicus Gifu genome v1.2.
CAAGACAAGAGCAACAAGCATTCAGAAATTCTCTTGTTTGTTAGTTTAAGGGCCTTCAACAATACCTGAAAATAGAGTTC TATCTAGTTTTCACCTTCCACATAGGAAGAAAAGTGATTCAGAGAATAAAAGTCATCAGGTAGTATACACAACTGGTTTT CAGCATTGGGGGTTAACTGTTAAGTTGTGAGTTTTTATATGTCAGGGTGCTAACACATGGCTTATGTAGGTGGCATGTAC CATCATCACCAACACCAAGGAAAAAATATCCATTCTTCTTCCCGAATGCCGATCCCATCAGAGAGACACATGTTCCTTCA AACAGGAAATGGGTCTGGTGATTCAGGACTTGTGCTCTCAACTGATGCTAAGCCTAGATTGAAATGGACACCTGATCTTC ATACCAGGTTTATAGAAGCAGTCAATCAGTTAGGTGGAGCTGACAGTGAGTATTAAACACATCTGTTTGTGGATCATCAA ATCTTGAGGAACATAGAATTTGAATTCACTAATGTGAAGTACAATCTTTCTATTGCAGAGGCTACTCCGAAAACGGTAAT GAAACTCATGGGGATTCCTGGGCTGACCTTATACCATCTAAAGAGCCATCTTCAGGTAAGAACATTAGTGAACTGTATTA CAAATTTACAACCTTTTAATGGTTAGATTCCATTCATTTTATGCTAATCAAATATAGATTTTGCTAATCAAAATCTCTAC CATAGGATACCTGAATTTTCGTTTCAATGAATAGTAAATTCTTCTTCATTTAAGACTTCCACACACCTTAAGCAAGTTGC TCACCAAAGTTTTTGTTTCCTCTTTTGCTAAATGTTCTTTTGGAACTGGCATAAATGTTTTCCTACACTCTTTCATGTAA ACAAATTCATATATTGTGTATATAGAAGTTATGTACAAATTATGATTATTCCTTCACCATGGTTGATAATATTCTTAAAA TTTCTTCAAAATAATATTGAAATTACTAGTCTCTTGGTTTCAGACCTTATAACGGATGTCCATACTTCTCCTGAATTCTA TATCATATGTTTGGAAACTTTTACTGTCTCATACATCATATAAATCTGAAAAATTGTAATTTGATGAAACAATTGTCATA TACATGTTATGCACAAAATCACAAACCCTGAATCACTTTTTCACCTTAACTTGTATGGTGCAATCACTGATCATCCTTTT CTTTTCGTTACCAGAAGTACAGATTGAGCAAGAATCTGCATGGACAAAGCACCAACGTGACACAAAAAATAAGTAAGAGA ACAATCCCTTCATTTTTTTATAATCTACTTATGAACCGGGTAGTTGTTTTTGAAGAACAAACTGATCTTACCAGCAACAA ATGCAGGTGCAGGAACTGCGGAGAGACTTGCTGAACCCAGTGGAACTCACATGAACAAATTAAGCCTTGCACCGCAGCCT AACAAGTAATATAAACAGAACCTTTTTCACATGCTTCATGTAATCTTACTTGACATGAACATTCTACAGCTTTAAGATTT TACACTAACGTGCAAAAGCCTTTGTGCCCCCAGAGATCTACATATTGGCGAGGCACTGCAGATGCAGATTGAAGTTCAGA GAAGGCTCAATGAACAACTAGAGGTGAGTCTTAGCAAACCTACTATACATGCATTATCCATCCCATCATTATATCACCTG TGCTATTTAGTTCATTGAAATTTGCTGCCAAAGAGGGTAAAAAAATAGAAAAGCATATCCATATAAAAGTTGTTTTGAAA ATGACTCTATACCCCAAATTTTCTACACTCAAACAATCATATTCTTTCATACAACTTCACCAAAATCTCTTAGTACTGAC AATCACTTTTCTTATAACTATATTAACAGTTTTTCTATTTGATATGTGATGAAGAGTATCAATGATATCTTTGAGAGAAA AGAGAGGTTGGGAAACACAAATCACATAAGAGAAAAAAAAGTTATTTTAACAGTTACTTCTAGAACAATTACACATTTCC TTATACTAAAACCAGTACCCCTAGCTTCTTGTTTTTTGACTTCTTAAACTCTAACAAATCATTCTGAACCTCTCCAGGTA CAGAGACACTTGCAGCTTCGTATAGAGGCACAAGGGAAGTACCTTCAGTCTGTGCTGGAGAAAGCTCAGGAAACTCTTGG AAGACAGAATTTGGGAATAGTAGGACTAGAAGCTGCCAAAGTTCAACTCTCGGAGCTCGTGTCTAAAGTATCTTCTCAGT GCCTGAACTCGGCATTTTCAGAGCTGAAGGAACTACAAGGATTTTGCCCGCAGCAAAACCAAACCAATCAACCAAACGAC TGCTCCATGGACAGCAGTTGCCTCACATCCTCTGAGAGATCACAGAAGGAGCAAGAGATTCAAAATGGAGGCCTTGGCAT GAGACCCTTCAATGGTCATGTGTTCATGGAACAACGAAAGGAAACCGCGACAACAGAACTTCCTCACCTTCGAAACGCAG AACTCAAGTGGCATGATGAAGTGAAAAAGAACACCTTTCTCACCCCATTGGGGAAGAACGAAGAAAGAATTACTTATGCT GTAGAAAGCAGTTCTAACAACTTATCTATGACAATTGGACTTGAAAGAGAAACACAGAATGGCATCAGCATGTATCCTGA AAGAGTAATCAGGGAAGGCAACTCAGATGGTCATGAATTCCAGCACAGGAACAGCAACATGACAGAAAAATTGAAACCAG TGGATGAGAGGTTGCCTTCTTACTTTGCAGCAGCAAGATTGGACTTAAACACTGAAGCTGCAACCAGTTGTGGTAAGCAA CTGGACTTGAACAGATTCAGTTGGAACTGAGTTGAGAAGCTTAAAACTTCACACTGAGTGAAGAAGAGATACAGAAAACA ATGCTTCTCCAAAATTTGATTCTGAATAATCAAGAGGAGGGTAGTTAGTTGGACTTGGATAAAGTGTAATATCAGCTGCT AATTCTTTCAAATCAACACGCATCCAGATAATATGTAATTTTTAGGTGAATGAAATAAGTTGCAGCAACAAAGACCAATG ATCATTTTGTAATCAATCATTAAAAAGGAGATAGC
CDS sequence (LotjaGi3g1v0176800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTATGTAGGTGGCATGTACCATCATCACCAACACCAAGGAAAAAATATCCATTCTTCTTCCCGAATGCCGATCCC ATCAGAGAGACACATGTTCCTTCAAACAGGAAATGGGTCTGGTGATTCAGGACTTGTGCTCTCAACTGATGCTAAGCCTA GATTGAAATGGACACCTGATCTTCATACCAGGTTTATAGAAGCAGTCAATCAGTTAGGTGGAGCTGACAAGGCTACTCCG AAAACGGTAATGAAACTCATGGGGATTCCTGGGCTGACCTTATACCATCTAAAGAGCCATCTTCAGAAGTACAGATTGAG CAAGAATCTGCATGGACAAAGCACCAACGTGACACAAAAAATAAGTGCAGGAACTGCGGAGAGACTTGCTGAACCCAGTG GAACTCACATGAACAAATTAAGCCTTGCACCGCAGCCTAACAAAGATCTACATATTGGCGAGGCACTGCAGATGCAGATT GAAGTTCAGAGAAGGCTCAATGAACAACTAGAGGTACAGAGACACTTGCAGCTTCGTATAGAGGCACAAGGGAAGTACCT TCAGTCTGTGCTGGAGAAAGCTCAGGAAACTCTTGGAAGACAGAATTTGGGAATAGTAGGACTAGAAGCTGCCAAAGTTC AACTCTCGGAGCTCGTGTCTAAAGTATCTTCTCAGTGCCTGAACTCGGCATTTTCAGAGCTGAAGGAACTACAAGGATTT TGCCCGCAGCAAAACCAAACCAATCAACCAAACGACTGCTCCATGGACAGCAGTTGCCTCACATCCTCTGAGAGATCACA GAAGGAGCAAGAGATTCAAAATGGAGGCCTTGGCATGAGACCCTTCAATGGTCATGTGTTCATGGAACAACGAAAGGAAA CCGCGACAACAGAACTTCCTCACCTTCGAAACGCAGAACTCAAGTGGCATGATGAAGTGAAAAAGAACACCTTTCTCACC CCATTGGGGAAGAACGAAGAAAGAATTACTTATGCTGTAGAAAGCAGTTCTAACAACTTATCTATGACAATTGGACTTGA AAGAGAAACACAGAATGGCATCAGCATGTATCCTGAAAGAGTAATCAGGGAAGGCAACTCAGATGGTCATGAATTCCAGC ACAGGAACAGCAACATGACAGAAAAATTGAAACCAGTGGATGAGAGGTTGCCTTCTTACTTTGCAGCAGCAAGATTGGAC TTAAACACTGAAGCTGCAACCAGTTGTGGTAAGCAACTGGACTTGAACAGATTCAGTTGGAACTGA
Protein sequence (LotjaGi3g1v0176800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAYVGGMYHHHQHQGKNIHSSSRMPIPSERHMFLQTGNGSGDSGLVLSTDAKPRLKWTPDLHTRFIEAVNQLGGADKATP KTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQSTNVTQKISAGTAERLAEPSGTHMNKLSLAPQPNKDLHIGEALQMQI EVQRRLNEQLEVQRHLQLRIEAQGKYLQSVLEKAQETLGRQNLGIVGLEAAKVQLSELVSKVSSQCLNSAFSELKELQGF CPQQNQTNQPNDCSMDSSCLTSSERSQKEQEIQNGGLGMRPFNGHVFMEQRKETATTELPHLRNAELKWHDEVKKNTFLT PLGKNEERITYAVESSSNNLSMTIGLERETQNGISMYPERVIREGNSDGHEFQHRNSNMTEKLKPVDERLPSYFAAARLD LNTEAATSCGKQLDLNRFSWN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 23 | 23 | - | – | |
| PANTHER | 9 | 421 | 413 | 1.1E-147 | – | |
| PANTHER | 9 | 421 | 413 | 1.1E-147 | – | |
| Gene3D | 48 | 110 | 63 | 6.6E-28 | – | |
| ProSiteProfiles | 49 | 109 | 61 | 10.057 | ||
| SUPERFAMILY | 51 | 107 | 57 | 1.59E-16 | ||
| TIGRFAM | 52 | 107 | 56 | 7.8E-23 | ||
| Pfam | 54 | 105 | 52 | 2.0E-8 | ||
| Pfam | 151 | 197 | 47 | 4.7E-24 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi3g1v0176800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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