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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0178700 |
| Transcript ID | LotjaGi3g1v0178700.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | rRNA-processing protein FCF1-like protein; TAIR: AT1G26530.1 PIN domain-like family protein; Swiss-Prot: sp|Q32PD0|FCF1_BOVIN rRNA-processing protein FCF1 homolog; TrEMBL-Plants: tr|I3T9S6|I3T9S6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0178700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:24910845..24915089) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGTAAAGCTAAGAAGGGACCCAAATTTGCGGTTAGGAAGAAGCTTGTTACTTCCAAAGCAATTAAAAAGTGAGTTTT TATATGTTTGTTCCTCCAGTATGCCTTTTTTGTTCTATTTTCATTCCCAAATTTGCGGTTAGGAAGAAGCTTGTTACTTC CAAAGCAATTAAAAAGTGAGTTTTTATATGTTTGTTCCTCCAGTATGCCTTTTTTGTTCTATTTTCATTCCCTGAATTTC TGTCACATTCAGCTATAAAGAAGAAGTTTTGAACCCAGAAAAGAAGAACCTTCTAAAGGAAAAGTTACCCAGAAACATGT AAGCCTTCATTCTCACCCTTTTCTTTCACTTCTTATTCCTCTTGAATATATCAGCTTCCCGAATCGCTTTTTTTGTTTTA ATAATCTATGGTTTAAACTTCCATTGTTTAGTCCAAGTTATTCTTCAGCTCTTTTCTTTCAATACAATACTGCATTGGGA CCCCCTTATCGTGTTCTGGTGGATACCAACTTCATCAATTTCTCTATCCAGAATAAAGTAAGTTTTTGTTTTCCTCTTTT AACTAAGTTAATGAAGTATTATATGATTTTACCTGGTTCTGCATGCCTAGTAGTTTCTCATGGAGTTTGTTTGTTTAAAG TTAAACTCATAATATATGATGCTGATGATGTTTGTGACTGTATTTTGATGATATCGATATGGTTCTTATGACTTATGAGC TTTTCCTCAATGGATTGAAATGATAAATCGAAAGTTCAGTCTTCACTACAAATTTGAAACAATTAAAGCATTATAGTGTG TAGTTGATCTCATTAGAATCATACGAGTGACATCCTCTTTTTTTGGTTGGTTGCTCACATGATTCTTTGGCCATGTTTAT GCAGTTGGATCTGGAGAAGGGAATGATGGACTGCTTATATGCGAAATGTGAGTTTAAACAGATGGTTTCATGTGTTGGTT TATGAATTTCTTGTTTAATTTTAGTTGAATGTTAGGATTCAGATAGGAACCTGTTATTTTATTAGAAAGAATAGGGAAAA TCTTCCCTGCTTACAACAATGCAGATCCTGAAGGGTTTGCCCCTCCTTACCCTTACGTCTCAATCTTGCAACTCTAGTAG GTTCCTGCACTGACTGAGGTTTGTGTAACCTCACTGATTTCTCCAAGGGACATAAAAAATACTTAAAGCCATAGAATCTT TGAAGAAGTTCTTGCTAGTAATTCATCAAAACCCTCCAAACGTTCCTTTAAAGTACATGTTCGTTTCACACTTAATAGCT CTCATAGTAGTCAATCCCGGATAGCGGCGGACCCCAAAAGTGGGATAGCGGGATGGCCGCTATTTTGATTTTTCATATAT AATTTTATATAATTAATAGTAGAAAATTAAAGAGGAAAAGAAAGGAAAGAAAAATAGAGGAATAGAAAAAAAAACAGAGC AGAACAGAGGCCCAAGGGAAACAGGGGCACTGGTCGCCGGAGATAGGCTGAAAGTCACCGCACAGAGTTCACCGGAAGTT GGACGGTGCTTGTCGGAGGTCGGGAGGTGGCCATGGGTGCTGATCGAAGGTGGCTGAAGGAGATCGCACAGTGGCCATGG GTTCTGGTCGCAGAAGAAGAAGATGAATAGTGACAGATGAAACACGCGTTTCATTTATTTATGATGAAATCCCAAAAATG CCCTCAAAGTTTAACCTAATTATAAAATTTCAAGGGCAATTTAGGTTTTTCCACAACTTCACCTTATCTTCTTCTTGTGG CGCCGCGATCTGGCCGCGATTTGCGGCGCGACGGCTTCAGTAGCGCCGCGATCGATAACTATGATAGCTCTAATAGTGGG TCATTATAGTCACAGTTGCCGAATTGACTTTCAGCATCATAAAGAATCTATCTCGAATTCAGATTTTCTTTATCCATTCG TGCTGCATAACGTCTCTGCCAAGTGCCAGCCTTTGTCTCCACTCTCCATGGCCCATCAACAGGTTCACTTTCTGATTATT GGGCACTTCTTCAAGCATGAAGTATTGTTCGCACATAGCCCTCCTCTCCCTGTACCTCGAACCATCGAATGATAGAAAAT ATATTTTGGGCTCCTCTGTTACCTATTTACATCCAAGACCACTTTCTCTTCATCTCCCCCTATGCTAACACGAGAAGGGA TTGGGTCACTTCCCTTGTCACGTTCCATCCTCGCCTCGAGTGCTGTGATGTTATGTTCTATTGCATCCATCCCTGATGTC ATCCTGTTTTTGCATAGATGCTATATTTAATAATATCTTTGATTCTTCTCTCCTAGTTACTATATTTGATAGTATCTTTA ATTATTCTTTCCTATTTACTATATTTAATATGGCTATTGAGTATTGAGTATTACTCACCCAGTCATCCTTATTTCTCCTT TTATACTATCCTAATAAACTTTTAAGTAGCAGATACCCAACAGATTCCTATCAGGTTTTAGATCTTATATGATAACCTTT TCAAGATTAAAAAAAATTATATTTGAATAAAACATCACATACTCTATTCTTACTCTTGTTCTGTTGACGCTTTGGATTTT CAGGTACCCCTTGTATCACAGACTGTGTGATGGCAGAACTTGAGAAGTTAGGACAGAAATATCGTGTAGCTTTAAGGTAC ACATTCTTTCATGCTTCTTAATTATCATTGCTCTTTATTTTCACACACTTGGGATATGCATGTAAAATATCAAGGCTTAA CAATACTTTTGGTGAAATTTCTGCTTCAGTATGTGCATTATCAATTGGATTTATGTTTGAGATATTTTATTTCTATGCTA AAATCCCTAATTTTCACGTACAAGTGGATTTAATCACAAAGGGCAAAACATTCTCTTTAAATGACTGATATAGGACAAAC CAAATTGCTGGACTCCCTGACTTTATTTTGCTTTGAATACCATGGATTTTTGTTTAGGTAAGAAATCATACTTTTCCAGT TTCAGCTTCCTGATAATTTATCTTTTTTATACATGACAGGATTGCGAAAGATCCTCGATTTGAGAGAATACTATGTACTC ATAAAGGGACCTATGCTGATGACTGCCTTGTTGAGAGAGTTACTCAGGTCAGTGTAATTTAAGCATCTGTTAAATGTTCA GAAACATGTTGGATCACCTTGATTATTAAGATTAATTTGTCTTTTTTTGGCTGGATAAAAATTATTTATTTACCCCGCAT GTCTTGATATCTTTGAGAAAAGGAAAACATATTCACATTTTTGTTTTGTTCAATAATGAAGGCAAGATCCTTCTACGATA ATAATAACTTTTTTTTTTGGTTGTCAGCTGTTTGTTTCCTATTTTGTTGGCCTGGGATCTTTTAAATCTCTTAGTTTCAT ATGGTTTTCTAGATCTGTAAACTCATTTCTGTTGCTATTGTCCGATGGAAATTGAATTTATAGAATTTCGGGATACTTAC ATTTGGGAGTTCCTTTCCCTCTGCCCTATGTTCCTTGTCATTTTGAACTTTGAAAAATTGCGCAAGTTTTTTCCAATTTT GAATTCATAATTGGATATGATTGAGTATTATTTGCTTCATTCTCGGTATTTGTGAGCATCATTTTCCAAATTCTTGGCCT TTGCAGTGTATATTCATTTAAGTGAACACTTCTACTAGAAATAGTTCCAAATAAAAGTTATGTAACTATAACACATCTGC TGCTTATTTTATTTTATTTTTTGCAGTTTACTTGCACTAACCAATTTCTTGAATGCAGCATAAGTGCTACATTGTTGCAA CATGTGATCGGGACTTGAAGAGAAGGATCCGGAAGGTAAAGCCACTAATCATTTCTCCATCTTTGATTGTTTTGCTATTG GACCTGGATACATGACCCATAATCTGGATTTCTGTATTGCAGATTCCTGGTGTGCCAATAATGTACATCACCAAACACAA GTACTCAATTGAGCGGTTGCCTGAAGCAACAATTGGTGGAGGTAATTACTCTGTATTATATGCCGTAATACTCTCGTAGT CTCATCTATTTGCTGTCAAGGTTGATAGCCAAGAAAACATATTTATAGGTTATAGCTAACCACTAACTGTGGATTTGAGC TTAGTTAATTAGACTGAGGGATCTTATATTGTAATAAATAGAAAAAGCTAAGATTCATTCAGTTTACCTCATCAGCTCCC AGGCTGTTTTGTTGTAATAATTAATAAATAGAAAATACTAAATTCGAGTGTTCTGCTTGAATTCATGAGAAAAGGGATGA TATGA
CDS sequence (LotjaGi3g1v0178700.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTAAAGCTAAGAAGGGACCCAAATTTGCGGTTAGGAAGAAGCTTGTTACTTCCAAAGCAATTAAAAATCCAAGTTA TTCTTCAGCTCTTTTCTTTCAATACAATACTGCATTGGGACCCCCTTATCGTGTTCTGGTGGATACCAACTTCATCAATT TCTCTATCCAGAATAAAGGAAAATCTTCCCTGCTTACAACAATGCAGATCCTGAAGGGTTTGATTGCGAAAGATCCTCGA TTTGAGAGAATACTATGTACTCATAAAGGGACCTATGCTGATGACTGCCTTGTTGAGAGAGTTACTCAGCATAAGTGCTA CATTGTTGCAACATGTGATCGGGACTTGAAGAGAAGGATCCGGAAGATTCCTGGTGTGCCAATAATGTACATCACCAAAC ACAAGTACTCAATTGAGCGGTTGCCTGAAGCAACAATTGGTGGAGGGATGATATGA
Protein sequence (LotjaGi3g1v0178700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGKAKKGPKFAVRKKLVTSKAIKNPSYSSALFFQYNTALGPPYRVLVDTNFINFSIQNKGKSSLLTTMQILKGLIAKDPR FERILCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITKHKYSIERLPEATIGGGMI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 24 | 59 | 36 | 3.9E-62 | – | |
| PANTHER | 24 | 59 | 36 | 3.9E-62 | – | |
| Gene3D | 27 | 146 | 120 | 1.3E-28 | – | |
| CDD | 33 | 139 | 107 | 1.42467E-65 | – | |
| SUPERFAMILY | 41 | 141 | 101 | 4.12E-18 | ||
| Pfam | 74 | 140 | 67 | 2.8E-26 | ||
| PANTHER | 75 | 148 | 74 | 3.9E-62 | – | |
| PANTHER | 75 | 148 | 74 | 3.9E-62 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Small-subunit processome | A large ribonucleoprotein complex that is an early preribosomal complex. In S. cerevisiae, it has a size of 80S and consists of the 35S pre-rRNA, early-associating ribosomal proteins most of which are part of the small ribosomal subunit, the U3 snoRNA and associated proteins. |
Expression pattern of LotjaGi3g1v0178700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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