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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0180200 |
| Transcript ID | LotjaGi3g1v0180200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Leucine-rich repeat-containing protein 1; TAIR: AT5G22320.1 Leucine-rich repeat (LRR) family protein; Swiss-Prot: sp|Q6DIQ3|PP1R7_XENTR Protein phosphatase 1 regulatory subunit 7; TrEMBL-Plants: tr|I3STN1|I3STN1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0180200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:25070346..25074941) extracted from Lotus japonicus Gifu genome v1.2.
GGTTTTTCTGAAGCATTTAGGTTAGAAAGCTCAGAGGCATCGCGTTGCGAGTTGAAGCAGTGAGCTGAGGGAAGAAACAA CCGGCAATGACTCGCCTGAGCTCCGACCAGGTATTGAAGGAACACAACGGCGGCGATCCAAGCTCCGTCACCAGTCTTCA GCTCACTTTCAAAGCTCTTTGCGATGTGAGATTTCCATTTCCATTCCCTTTTATGTTTCTGTACCCTTAACAAGTTATCA CCCCCAAAAATTTGAACTTTGGAAATTACTCAGGTGTCATGCTTGGCCATCTTCAGTAACTTGGAAAAGCTTGACCTCAA GTTCAACAATCTCACTTCACTTGAGGTTTTTTTTTTTATTTATTAGCTCTTCTTTTTTTCATGTTAAGATTGAAAAAGAT GAAATTGTAGGTGTGTGTGTGTGCATTTCTGATTGTGTTTGTTATGCATGTTACATCAGGGGTTGAAGTCATGTGTTAAT TTGAAGTGGTTATCAGTTGTAGAAAACAAATTAGAAAGCTTAGAAGGGATTCAAGGACTTACTAAGCTCACTGTAAGTAC CTGCTTTGTTAATATCATTTAAGCTCTGTTTTTTGTTCCCTTTTACTTATCAATTATTAGTTTAACTGCTTGCACTATGT ATATGTAGCATAGAACAGTGTTTCTTGTTGATAGTTTTTCTTGTGCTCTTACTTGTGTGTGGACTGTGGACTGTGGTGTG CATTTGTTTTCCCTTCAATAACAATCTTTATCGGCTGGGGGGAATAATTCTTTATCTTTATAAAATCGTAGGTTTTGGGA TACGTTGATTCGCTGGCCTCTACTGATGGGTTGTTTTAACTTTTAATTGTATTTGGAAAAATATTCTGCATGAATGAGGT CATGGAGAGATGAGATTGGTATGATTGTGGCATCATAGAGCTCGTTTGAATGCGGATCAGAAAGCACTTGATAGAGCTTA TTCAGTGTTTTTTCTAGTAAATAAGGTTCAATAAGTGTTTTTTAGTCTGTATCCAAATAGGATCATAGCCTTAAATCCCA AGTGTTGTGACTCCCCACATGTTGCTGGAAATTTAACTGGCTCATAGATTTATCATGATCAATGCATGAAATTGTTTATT TTCTGATGAATAGCCTGTTTCCTTTTGCCAACCACATTACTGTTGTTGTTTATGACTTATGTGCATCTTGTCTATATACA TGTTATTAGTATCCTCATTCTAAGTATAATGTTGGCTTATCCAAGGGCTCAGTCAAATCTTTATTTATTGAGACTAAATT TGCTAGAAACCTTTCATTTCCCAGTTCATGATATATGTTTCAGTATTATTAAGTATAGTATACTATTCTTATAATTTTAT TACTGTTTGTAAAGCTTGTAGAAAGAGTAGCACTCCGCTGAGTTCTTTTCTCAAATGTGGATTCTTCTGTCCTTCTCTTA TGCCTGTCTTGTTTCCTCATGCACCAGCATAATGTTGTCCAATAGCGCATGATACTTGAAATAAACTGAGTTACATGAGG ATTTAGGAGTCACTTTTATATGCATATGTGAACCAGGTGCTTAATGCAGGCAAAAACAAGCTTAAATCTATTGATCAGGT CAGCTCCCTTGTTGGACTCCGGGCACTGATTTTGAATGGTGAGACTTCTTATATTACCACCTGAATCTGTGTCAAAAGGT TGAACTTAGAACCATGCAAAATATATTAGTAGTGAATCTTTCTATACAAATACATCTTTTTTTTTTCCTAACACTATTTT TTGTTTTGGCAGATAACGAGATTACCTCCATTTGCAAATTTGATCAGTTGAAAGAATTGAATACTCTTGGTATGACTAAT TATACTTTGCATATTTTTTGAAGTTTTCAAATTTTTTTACTCTGCCTAATGGGATAAGGTTTGGTTGTTGTCTGTCATTA TTAGTGATTGGTATGGCTTGAATGTTATGCTTCCATCACCATAGGCTGGTTATATTTGAATTTTAATTCATTATCCAATT TACAAGAAGGATGCACTTCTTGAAGCAAATATTACATGAAAATCCTACAAGTAAAATCAGGATGAAACCATATGAATTGT AAAGTAATTGAACCAATCCCAACCTTCTCTATAGATCCCAACACACACATATCTGTTGTTTGCTTGAAATGCAAAATTAT TTGTGGCCAAACAATATCTTAGTGATATTTCAACTTGAATAATCTTTCGAACATCTCTAAATTCTCCTGCAGTTCTATCC AAAAATCCTATCCGTAAAATTGGTGAGGCTCTGATGAAGGTGAAATCTATCACAAAGGTAAAGGGAACCCCATGTTGTTG AGCTCTTTCAGTGCTTATTTCAGTATTGTATTCCTATTGCTCACAATACCTCTCCTGGTTCCAGCTTTCCCTCTCTTATT GTGAGCTTCAGGGTATTAACACATCACTCAAATCTTGTGTTGAGTTGATAGAGCTCCGCCTTGCTCACAATGAAATTAAG GTGTGCTTTATATCAGTGGCTTTCCTTTTTAATTCCACATCAACTAATGAATTGTATTTGTATTGGGAATGTTCCATATA GTGCATTCATATTTCATATTTATTTCATATCTTTATGACATCTTACTAACATATGGATTTCAGACTCTCCCGGATGAATT AATCCACAATTCAAAGCTCCAGAATTTAGATTTGGGGAATAATGTGATCACTACGTGGTCAGAAGTAAAGGTTAGATATG CTTATCTGGAATTTTCTCTTTTTCTGACATTTCACAGTTGTCTAGGACACTCTTTGTTAGAGTCCCACATTGGCTAGAGA TGTGGCCAAGCAATTGCTTATATATGGTTGTGCAAACCTTAACTCTTGAGCTAGCTTTTGGGTTAAGTTAGGCCTCCTTC ATGGTATCAGAGCCAATGGTTGATTGACCATGGGCCTGGGCCCCTATCCTAGATCCATTTGTTGTGGAGACCTCCCATAT TTGGGCCACCCGTTTCATTCCACGCTCCAGATGTTCTACACTGGGCGTGAGGGGGTGTGTTAGAGTCCCACATTGGCTAG AGATGTGGCCAAGCAATTGCTTATATATGGTTGTGCAAACCTTAACTCTTGAGCTAGCTTTTGGGTTAAGTTAGGCCTCC TTCACTCTTTACCATGTATGTGCCTTAATCATGTATTGCAACTGCAGGTGCTGAAATCACTCACGAACCTAAAAAATCTC AATCTACAAGGAAATCCTGTTGCCTCAAGTGATAAAATTACAAGAAAGGTGATCCCTCTGTTTCTTTGGTCCACATGTTA ACTTATACTTGATAGTTGATTCTAAAACCTCATACTTAAAACTACCATGGGTTTCAATGTTACAGATTAAGAAAGCACTG CCGAAACTACAGATATTCAATGCTAGACCAGTACATAAAGATGCCAAGAATGAAAAAGGTGACACAGTTGATGGTGATCA TGATTTTTCAGCAGCAGATCGTGTGGGTCAAAATTTGAGAGATAGCACCAAAGAAAAGAAGAGTCAAAATGAGGATGATC ATCCTAAAACTGCTGATGATCCTGACTTGGGGAGAAAGTCTAGTAAGAAAAGAAAGAAAACTGTTGTTGATGAAGAAGAT ACAGGTCATAACAAGGATAGTGCTGATGGAAAGAAAGACAGTCTTATAGGTGCCGTTGATCCTGACACACTGAAGAAATC ATCTAAGAAAAAGCTAACAAAGGATGACAAGCCCTTGGACAAGGGTTTGGCTCTTGAGGAGAATGTCAATATGATTGAGA AGAAAAGGAAGAAGAAACAAAAGAATGAGGAACCAAGTGAGCTTGATGTTATTGATGATGCAGAAACTTCATTTGTAGAG CTATTTAACATCAAGGGTGCAGAAAATCTGAACCATGGTGGGGAAAAGAAACCCAAAGATGTCAAATTGGTGGATAGCAC AATAACCTCATTTTCGAAGCACAAGAGTGCTAAAACACCAAACTTGGGGTCTCTATCATCTCCGGTGACAGAAATTGGAA TGGGAGGGGCATCAACATGGGGTGATGAGATAAACTGATAATATCTGAAGATATGCTGATGCTTCAAAAAGCAGACTAAT TTTGGTGAAGTGTTGCTCTCAATTGCACTTATTCTCTGCATTAGGTGCAGTTGGTAAAACTTTTGAAATTTTGTACCATC TCTTTTGCATATTTTACATGACTGATGTGAAATTCAGTTAGTAATGTTGTGTTACTTTTTCAATTGGAACTGCTTGTGCA AAGCGGTGGACAACCACAAAAACTAAAGAAAGTTACTTCTATCCGCTGTGATTTTGGGTTAACTATGATTTTTCTATGTA TCCAACAAACATGCATGCAGTTGTTTCTTGACAAGTTGTCATTGTGATAAGTATTGATTGCCATGTACAAGCACGTTTGT CCAATTTGAAAATATCGTGGCGGAATGCGGATACTAGAATTTATTAATCAATTATTGAAAGCAGATTAGACAGAAAAAAA TCGGCAGAAGCAACAAAACGTCATGTAGAGGCAAGATAACTACTACGTTCTGAGTCAATTGCTGACGTAGTAATAGTACG TGCAGTAAGCTGCCAATCGACAATTTCTTTTAGCAC
CDS sequence (LotjaGi3g1v0180200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTCGCCTGAGCTCCGACCAGGTATTGAAGGAACACAACGGCGGCGATCCAAGCTCCGTCACCAGTCTTCAGCTCAC TTTCAAAGCTCTTTGCGATGTGTCATGCTTGGCCATCTTCAGTAACTTGGAAAAGCTTGACCTCAAGTTCAACAATCTCA CTTCACTTGAGGGGTTGAAGTCATGTGTTAATTTGAAGTGGTTATCAGTTGTAGAAAACAAATTAGAAAGCTTAGAAGGG ATTCAAGGACTTACTAAGCTCACTGTGCTTAATGCAGGCAAAAACAAGCTTAAATCTATTGATCAGGTCAGCTCCCTTGT TGGACTCCGGGCACTGATTTTGAATGATAACGAGATTACCTCCATTTGCAAATTTGATCAGTTGAAAGAATTGAATACTC TTGTTCTATCCAAAAATCCTATCCGTAAAATTGGTGAGGCTCTGATGAAGGTGAAATCTATCACAAAGCTTTCCCTCTCT TATTGTGAGCTTCAGGGTATTAACACATCACTCAAATCTTGTGTTGAGTTGATAGAGCTCCGCCTTGCTCACAATGAAAT TAAGACTCTCCCGGATGAATTAATCCACAATTCAAAGCTCCAGAATTTAGATTTGGGGAATAATGTGATCACTACGTGGT CAGAAGTAAAGGTGCTGAAATCACTCACGAACCTAAAAAATCTCAATCTACAAGGAAATCCTGTTGCCTCAAGTGATAAA ATTACAAGAAAGATTAAGAAAGCACTGCCGAAACTACAGATATTCAATGCTAGACCAGTACATAAAGATGCCAAGAATGA AAAAGGTGACACAGTTGATGGTGATCATGATTTTTCAGCAGCAGATCGTGTGGGTCAAAATTTGAGAGATAGCACCAAAG AAAAGAAGAGTCAAAATGAGGATGATCATCCTAAAACTGCTGATGATCCTGACTTGGGGAGAAAGTCTAGTAAGAAAAGA AAGAAAACTGTTGTTGATGAAGAAGATACAGGTCATAACAAGGATAGTGCTGATGGAAAGAAAGACAGTCTTATAGGTGC CGTTGATCCTGACACACTGAAGAAATCATCTAAGAAAAAGCTAACAAAGGATGACAAGCCCTTGGACAAGGGTTTGGCTC TTGAGGAGAATGTCAATATGATTGAGAAGAAAAGGAAGAAGAAACAAAAGAATGAGGAACCAAGTGAGCTTGATGTTATT GATGATGCAGAAACTTCATTTGTAGAGCTATTTAACATCAAGGGTGCAGAAAATCTGAACCATGGTGGGGAAAAGAAACC CAAAGATGTCAAATTGGTGGATAGCACAATAACCTCATTTTCGAAGCACAAGAGTGCTAAAACACCAAACTTGGGGTCTC TATCATCTCCGGTGACAGAAATTGGAATGGGAGGGGCATCAACATGGGGTGATGAGATAAACTGA
Protein sequence (LotjaGi3g1v0180200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTRLSSDQVLKEHNGGDPSSVTSLQLTFKALCDVSCLAIFSNLEKLDLKFNNLTSLEGLKSCVNLKWLSVVENKLESLEG IQGLTKLTVLNAGKNKLKSIDQVSSLVGLRALILNDNEITSICKFDQLKELNTLVLSKNPIRKIGEALMKVKSITKLSLS YCELQGINTSLKSCVELIELRLAHNEIKTLPDELIHNSKLQNLDLGNNVITTWSEVKVLKSLTNLKNLNLQGNPVASSDK ITRKIKKALPKLQIFNARPVHKDAKNEKGDTVDGDHDFSAADRVGQNLRDSTKEKKSQNEDDHPKTADDPDLGRKSSKKR KKTVVDEEDTGHNKDSADGKKDSLIGAVDPDTLKKSSKKKLTKDDKPLDKGLALEENVNMIEKKRKKKQKNEEPSELDVI DDAETSFVELFNIKGAENLNHGGEKKPKDVKLVDSTITSFSKHKSAKTPNLGSLSSPVTEIGMGGASTWGDEIN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 123 | 123 | 1.8E-19 | ||
| MobiDBLite | 1 | 20 | 20 | - | – | |
| PANTHER | 6 | 437 | 432 | 5.3E-79 | – | |
| SUPERFAMILY | 14 | 256 | 243 | 2.38E-43 | – | |
| SMART | 40 | 61 | 22 | 1.8 | – | |
| SMART | 40 | 62 | 23 | 41.0 | ||
| ProSiteProfiles | 42 | 63 | 22 | 8.898 | ||
| Pfam | 42 | 81 | 40 | 3.9E-6 | ||
| SMART | 62 | 83 | 22 | 28.0 | – | |
| ProSiteProfiles | 64 | 85 | 22 | 7.643 | ||
| SMART | 84 | 105 | 22 | 16.0 | – | |
| SMART | 84 | 106 | 23 | 110.0 | ||
| ProSiteProfiles | 86 | 107 | 22 | 7.312 | ||
| SMART | 106 | 127 | 22 | 110.0 | – | |
| ProSiteProfiles | 108 | 129 | 22 | 7.666 | ||
| Pfam | 108 | 164 | 57 | 5.3E-7 | ||
| Gene3D | 124 | 277 | 154 | 1.2E-30 | ||
| SMART | 128 | 150 | 23 | 660.0 | – | |
| SMART | 128 | 151 | 24 | 140.0 | ||
| ProSiteProfiles | 130 | 152 | 23 | 5.933 | ||
| SMART | 174 | 197 | 24 | 22.0 | ||
| ProSiteProfiles | 176 | 197 | 22 | 6.657 | ||
| Pfam | 177 | 234 | 58 | 9.8E-8 | ||
| SMART | 197 | 218 | 22 | 18.0 | – | |
| ProSiteProfiles | 199 | 220 | 22 | 7.75 | ||
| SMART | 222 | 244 | 23 | 370.0 | ||
| SMART | 222 | 243 | 22 | 550.0 | – | |
| ProSiteProfiles | 224 | 245 | 22 | 5.71 | ||
| MobiDBLite | 259 | 374 | 116 | - | – | |
| MobiDBLite | 441 | 474 | 34 | - | – | |
| MobiDBLite | 441 | 462 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0180200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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