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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0183400 |
| Transcript ID | LotjaGi3g1v0183400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT3G18970.1 mitochondrial editing factor 20; Swiss-Prot: sp|Q9LJ69|PP243_ARATH Pentatricopeptide repeat-containing protein At3g18970; TrEMBL-Plants: tr|I1M490|I1M490_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0183400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:25700962..25703540) extracted from Lotus japonicus Gifu genome v1.2.
ATTTAGCACAAATAAAACTAAAACATCCTCTGCTTCTCTGACGAATGTTGCTGCAAAACTAGCAAAGAGAAGTTGATAGA TGACAGGACAGCAGAGAAATTAGAAAGAAAAAAAAAAGAGAGAAGCAAACAGGGTTGAGGGTGAACGGCCACGACTGGAA ACGGACAGCTAACGGTGCTTCAGATGCTGCGACTCAATATTTCATCCTTGACAAATAGAGAGAGGTAATTGAATGAATGT GTCACTCATGGTTAGGATTTCAAAACCTAGCTTTCACGTTTTCTATATTATATTTGTAATGAGAACGAACCCATTGAATT CATCATGGTTAAGCAAAATCACAAACAACATTTTCATTGTATATTCTTACTTCAGTTGCTTGTGATTAGGTTTTTATTCT TTTCAAATGAAGAATTGGCTCAAAAGCCTATCAACTGAAATGAATTGAGGATCTTACAGATGAAAAAGGATACTCCTTGT AGAAATTTTTCAAACAGTCAGATAGATGCAGCTGAGTGCATGAATATGGGGATGTTGCTTCCGCAAAATATTTATAGGGC CCTAGATCATCATCATCATCATCATCTGTCATATATGATCTGCAAATATAACTTCTGGGGGATTTCCATGTGTGACTTTC AAATTTCCAAAACCTATTTCTTGAACCAAGAATGTTAGTCTTTGGCCTCATGCTGACCGGTCTTCCAAGGCTTAGATGTT TAGAATTCTTGTATTCTTTTCCCAAATTGACCAACAGTGTAAAGCAAATCCATGCTCAATTGATCACTAATGGCCTGAAA TCTCCCTCCTACTTTGCCAAGTTAATTGAGCATTATTGTGACTCACCATACCAACACATTGCCTATAATGCGCATTTGGT GTTTGAAAACTTCGATAAACCAGACTTGCTTCTCTTCAATACTTTGATAAGATGTGTTCAACCCAAGGACTCTATTCTTA TTTTTCAAAATGAGTTTTCAAGGGGTGTCATGGTTTTTGATGATCACACTTACAATTTTGTTCTCGGAGCCTGTGCTCGC TTTCCTTCACCTTCAACATTATGGGTAGGTAGACAGCTACATCCTTTGATAGTAAAACATGGGTTTGAGCCAAATGTTTT GGTTCAGACTACCCAAATACATTTTTATGCTTGCAACAAAGATATTATATCAGCCCGGAAAGTGTTTGATGAAATGCTGG AGAAAAATAGTGTAACATGGAATGCTATGATAGCAGGTTATTGTTCCCAGAAAGAAGGAAACAAGAGATATGCACTTAAT GCATTGTCTTTGTTTAATGACATGTTGGTTTATTCAAGGGGAATTAAACCAACGGATACTACCATAGTGTCTGCACTTTC AGCGGCTTCTCAAATCGGTATGTTAGAAACTGGTACATGCATACATGGGTTTGCGGAAAAAACAGTAGCTACTCCTGAAG ATGATGTGTTTATAGGAACTGGGCTAGTGGATATGTACTCAAAATGTGGATGTCTTGACAGTGCCTTATCTGTCTTTTGG CGAATGAATCAGAAGAATATTTTGACTTGGACAGCAATGACTACTGGCTTAGCCATCCATGGGAAAGGAAAACAAGCCTT GGAGGTTTTATATAAAATGGGGGCTTACGGTGTGAAGCCGAACGAAACCACATTTACAAGCTTGTTGTCAGCATGCTGTC ATGCTGGACTTGTTGAAGAAGGCCTTCAATTGTTCCATGATATAAACAGAAAGTTTGGAGTAACGCCTCAGATACAACAT TATGGTTGCATCGTTGACCTTCTTGGCCGAGCCGGACAGTTGAAAGAATCTTATGACTTCATCATGGGGATGCCAATTAG TCCTGATGCTGTTATATGGAGGAGCTTGCTTGGTGCATGCAAGATTCATAGGGATGTTGTGATGGGAGAGAAAGTGGGGA AGTTTCTTCTACAATTAGAAAAGCAGGGTTGTGCAGAGTTGGTTCCAAAGAGTGAGGACTATGTAGCTATGTCAAATGTT TATGCTTCAGCAGAAAGGTGGGATGATGTTGAAACTGTGAGGAAAAAGATGAAAACCAAGGGTATTTTGAACAAAGCTGG TTGTAGCTTTGTTCAAACTGTCAGCATGGCTGCTTTGTAATTAAAATTTAAAAAATGAAGTTATCATGACCACAAAGTTA TCCGACAAAGAATATCACAACAATTATACAGATTGTGATCAATCATGAGACAATGTCAAGTAAAATTTTGTGTGTATCTT TCTTCATAAATTGAGTTCTCAATAAAATAAACCCTTAATTATCGAAGTAAAGAAAAGTGTGTAAATTTAGACTGATCTCA AAGGTAAGGATAATATTTTTCTCTTTTCTTGATAAATACGTGTTCTATATTAGTTGGATCCAGATCATGTTTAATCCACA AAATTGGATTGTAATATCTCACATGAAGTGTTAGCAAGTTTTTTGGGGCACCTAGTTGCTTCATTTTCTTCTTCTAGCCG TGTCTCAAATATGGTTAAATTCTAAAATATATGCCATGAACTGTTTATATACGTCAAGCTTAATCAAATTTAACTTTAGT AAGTGTTATTGTGTACTTT
CDS sequence (LotjaGi3g1v0183400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTAGTCTTTGGCCTCATGCTGACCGGTCTTCCAAGGCTTAGATGTTTAGAATTCTTGTATTCTTTTCCCAAATTGAC CAACAGTGTAAAGCAAATCCATGCTCAATTGATCACTAATGGCCTGAAATCTCCCTCCTACTTTGCCAAGTTAATTGAGC ATTATTGTGACTCACCATACCAACACATTGCCTATAATGCGCATTTGGTGTTTGAAAACTTCGATAAACCAGACTTGCTT CTCTTCAATACTTTGATAAGATGTGTTCAACCCAAGGACTCTATTCTTATTTTTCAAAATGAGTTTTCAAGGGGTGTCAT GGTTTTTGATGATCACACTTACAATTTTGTTCTCGGAGCCTGTGCTCGCTTTCCTTCACCTTCAACATTATGGGTAGGTA GACAGCTACATCCTTTGATAGTAAAACATGGGTTTGAGCCAAATGTTTTGGTTCAGACTACCCAAATACATTTTTATGCT TGCAACAAAGATATTATATCAGCCCGGAAAGTGTTTGATGAAATGCTGGAGAAAAATAGTGTAACATGGAATGCTATGAT AGCAGGTTATTGTTCCCAGAAAGAAGGAAACAAGAGATATGCACTTAATGCATTGTCTTTGTTTAATGACATGTTGGTTT ATTCAAGGGGAATTAAACCAACGGATACTACCATAGTGTCTGCACTTTCAGCGGCTTCTCAAATCGGTATGTTAGAAACT GGTACATGCATACATGGGTTTGCGGAAAAAACAGTAGCTACTCCTGAAGATGATGTGTTTATAGGAACTGGGCTAGTGGA TATGTACTCAAAATGTGGATGTCTTGACAGTGCCTTATCTGTCTTTTGGCGAATGAATCAGAAGAATATTTTGACTTGGA CAGCAATGACTACTGGCTTAGCCATCCATGGGAAAGGAAAACAAGCCTTGGAGGTTTTATATAAAATGGGGGCTTACGGT GTGAAGCCGAACGAAACCACATTTACAAGCTTGTTGTCAGCATGCTGTCATGCTGGACTTGTTGAAGAAGGCCTTCAATT GTTCCATGATATAAACAGAAAGTTTGGAGTAACGCCTCAGATACAACATTATGGTTGCATCGTTGACCTTCTTGGCCGAG CCGGACAGTTGAAAGAATCTTATGACTTCATCATGGGGATGCCAATTAGTCCTGATGCTGTTATATGGAGGAGCTTGCTT GGTGCATGCAAGATTCATAGGGATGTTGTGATGGGAGAGAAAGTGGGGAAGTTTCTTCTACAATTAGAAAAGCAGGGTTG TGCAGAGTTGGTTCCAAAGAGTGAGGACTATGTAGCTATGTCAAATGTTTATGCTTCAGCAGAAAGGTGGGATGATGTTG AAACTGTGAGGAAAAAGATGAAAACCAAGGGTATTTTGAACAAAGCTGGTTGTAGCTTTGTTCAAACTGTCAGCATGGCT GCTTTGTAA
Protein sequence (LotjaGi3g1v0183400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLVFGLMLTGLPRLRCLEFLYSFPKLTNSVKQIHAQLITNGLKSPSYFAKLIEHYCDSPYQHIAYNAHLVFENFDKPDLL LFNTLIRCVQPKDSILIFQNEFSRGVMVFDDHTYNFVLGACARFPSPSTLWVGRQLHPLIVKHGFEPNVLVQTTQIHFYA CNKDIISARKVFDEMLEKNSVTWNAMIAGYCSQKEGNKRYALNALSLFNDMLVYSRGIKPTDTTIVSALSAASQIGMLET GTCIHGFAEKTVATPEDDVFIGTGLVDMYSKCGCLDSALSVFWRMNQKNILTWTAMTTGLAIHGKGKQALEVLYKMGAYG VKPNETTFTSLLSACCHAGLVEEGLQLFHDINRKFGVTPQIQHYGCIVDLLGRAGQLKESYDFIMGMPISPDAVIWRSLL GACKIHRDVVMGEKVGKFLLQLEKQGCAELVPKSEDYVAMSNVYASAERWDDVETVRKKMKTKGILNKAGCSFVQTVSMA AL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 16 | 16 | - | – | |
| Phobius | 1 | 16 | 16 | - | – | |
| Phobius | 1 | 1 | 1 | - | – | |
| Phobius | 2 | 11 | 10 | - | – | |
| Phobius | 12 | 16 | 5 | - | – | |
| Phobius | 17 | 482 | 466 | - | – | |
| PANTHER | 41 | 243 | 203 | 6.1E-81 | – | |
| Gene3D | 81 | 261 | 181 | 1.6E-21 | ||
| ProSiteProfiles | 110 | 147 | 38 | 6.303 | ||
| ProSiteProfiles | 148 | 178 | 31 | 6.204 | ||
| Pfam | 178 | 226 | 49 | 3.4E-7 | ||
| ProSiteProfiles | 179 | 220 | 42 | 8.111 | ||
| PANTHER | 243 | 461 | 219 | 6.1E-81 | – | |
| ProSiteProfiles | 258 | 288 | 31 | 7.454 | ||
| Gene3D | 262 | 479 | 218 | 1.4E-38 | ||
| Pfam | 288 | 337 | 50 | 2.0E-9 | ||
| ProSiteProfiles | 289 | 323 | 35 | 9.734 | ||
| ProSiteProfiles | 324 | 359 | 36 | 10.698 | ||
| TIGRFAM | 327 | 359 | 33 | 4.9E-6 | ||
| ProSiteProfiles | 360 | 390 | 31 | 5.382 | ||
| ProSiteProfiles | 392 | 429 | 38 | 5.349 | ||
| ProSiteProfiles | 433 | 467 | 35 | 7.41 | ||
| Pfam | 437 | 465 | 29 | 0.11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0183400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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