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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0184500 |
| Transcript ID | LotjaGi3g1v0184500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein transport protein sec20; TAIR: AT3G24315.1 Sec20 family protein; Swiss-Prot: sp|Q6QD59|SEC20_MOUSE Vesicle transport protein SEC20; TrEMBL-Plants: tr|C6TKD1|C6TKD1_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0184500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:25825838..25831002) extracted from Lotus japonicus Gifu genome v1.2.
CACCCTACAAAGACAAATGAACAACAATAATATCCATGAATCAACATATCACTTAAAAGGAAAACGATAGCTTCGACTTG TCCACGCTTGAGTCATACCAAAGTCGAACAACCCTAGCAACGGTGATCAGGGGCGGACCCACAGTGTACTCAGGGGTAAA ATCCACTTACCCTCCTATGTAGTTTTTTTTGAACCCCCTAAGAATTTCAAATTGCACCTAAGTCCCCACTTAGTCACCCT CATCTCTCTCGCACTCTCACACTGCACCTAGGTCTGGCCGCCGGCGCCGTCAGCCTCAGCCACACGCACGGGTACCACCG CACCAGTCTCCAGCCGCGCGCCCACCGCACCAGTCCACCCCACCACCGCACCAGTCCAGCACTCCAGCCGCGCCTTTCTA GGTCCAGTCCAGGTAAGAATAATTTTGGGGCTTTTAGGGTTCAAATTTTAGGCATGAATAACTGTAAAATACTGCTGTAC TAATCTATTAAAACTCATGAATGGTAAGTTTAATAATTCTAGATTAAGATGGATAGCAATTTACCAGTAAAATTTATCCA TCCTGAAAAATCATTCTCACTGCTCTCTTTGACCTTTGTAATTAGATTTCTGACTTTGGAATTAGATTTGTGACTTTAGC TAATATGTGTTTTTTCTGCCACCAATGTGAACAAATTTTCTGTACTATGTAGTGTGAAATGTTGCATTTTTATAACAGGA AATGCTTGATTCTCAAATATTGTAGTTGCATGAGCTTTTGCTTCATCATTGTGATCTATTACTTAAACATTCATCTTGCA TTTCCTTTTTTTTTTCCTTTTTCTAGTCAAATAACAGATTGCTTGAAGTATCCACTGCATAGCATAGTGAGAAAATCATA TGTATGCACATGTTAATTTATGTTAAAAATATTTATTTGCAGGTCATAGATTTTTCATGTCTTGGACACTATGAGATGGT GTTTCATCACCACATTCACTCTTAAAATTGTCAGAGAAATTAATTTTTCTGGTGGAGAAGCAAGCCTTCTCATTCAATTG GCATTTATGAATATTAAAGGCAGATTCTTTACAGATCCTTATGACTTTTTGAAACACTAGCAATTGGGATGGGGTTCCTT TAAAGTTGTTTAAATTTCACTCATAACTCAGTTTTTTATAACAGTGAATTCCTGCTTTAAAGAACACACATTCAATTTCC AGTTTTCACTCTATTTTGCTTTTCACAACTTGTGCTGGTGAATTAATTTTGAGTGGAATTTTCATCTCTTAATTTAATGT ATGTAAAAGGAAGCACCATGCATTAGTGATACAGTTTAGTGGTTACAACTTGAAGCATTCTTCTGTTGAGCATTTTTTTC CGAAGTAGACACATCTTCTGCTGTTTGATAGAAATATTTCCATCACTATAGCATTGAGAAGTGTTTCCTTCTATATGTCA AAATGCATATGTGGATTGTGGAATGAATAACTGCATGAAACTCTTCTTCCCTTTTCTGATTTGGATTTTGTGCCTAATTT GCTGATTTTTTTTGTCACTAGTGGGGAGTAGTAGTCTATGTGTTATGCTTAGTTTTGTATTTCCTACCATGTTTCACTAT ATGGTGCTCAAAGAATGGAGATATATAGTGCAGGATTGGACAATTGTGGTTTTTTACAGGAACATGGTATTCTCTAGTGG TTATCCTTGCCCCTAAGTCTTGATTAGATAATGAAGATATCTTCTTGTTAACAATCACTTCATGGGCTTGATGCTTTGGG GTTAATTGTTTTTGCAGTAATTCTAATGCATAGGAGGTTTTGGGGTTAATTGTTGCAGAATTACTGTCAAAAAAACTTGG TCATTCATGAGGGAGATCTTTTCCAAGGATCTGATTGAACAAGATTTTTTTTTCTTCTGTTATGAATTACAGTATAATTG ATGCAAGTCACTAATTATTTCACTGTATTGCACTGCATATTCAGATCCTTTAAGTCAGATATTGAATTTTGGGAATGGAC AAGGTTGTGGAGGAGGTGGAAAAGGTGAAGAGGGAATGGGATGAGGCTTGCGGCAAAACACAACTCCACATCAAGGCAAT TGCAGACTATGGAAAATCAGGAAGACCCAAGGATGAGATAAACTCGCTTGCCAGGTTGAATGGGATGGCTCAGGATGGCT TGGCGCTCCTTTCTTCCTTGCATTTCACCCTCGATCTCCTCGCTCCACAATTGCCCACCGAAAAGGAGGTTGAATCTGCT CGTGTCTTGCTTGAATCCTGGAAAACCCTGTCTCAACAGTACCTACCCTCTTTCTCTCTCTGATTGAAATTAAAATTTTG TTTAGTTGTTATGGAACTCCAAAGCAGATTGATTTAAAATAGTTTATTTAGTAATGAATTATGAGTTGATAGCATGCATA TGTGTTTTAAATAGTTTGCGGCTAAGTCTGAGGAATGCTAATCTGCAAGCCAAGGCTAACTTGAGGAAAGCTGCTCAGGA AGAGGTAATTTGCTTCTTCTTTTTTATCCTGAACCTTGATATTTTGCTATTCATATTCTTGCTTAAATGCTTTTCTAGTT TAAATTTCCTAGTATTATTGTGAATGCTTCTAATCATTGACTGAGTGAAAAGATGTTAATTATATCATGATCATGGATGT GTGTCATTTGTGCTTCTTTACATTGATGGGTTGGAGTGTGACGTGACTTGTTTCATATTTCTCTATGATGCAGAGAGAGC TACTTCTAGGCGGTGGAGAAGAGTCTACAATTCGCAGACGCAATTTGCAGTATGTCCTTGGCGCCCTATTCAGTTGGGAT CAAATTATGATTTCGTTGTTTATTTTGCTTTTAGTGCCATTTGATTGGAAAATTTCAGTTAGCATGACATGGTGCCAGGA TGAATTATTTTAGTTCTCAAATCTGTGATTTTCTTCCAGGACAAAAGCTGGAATGACATCTGCTGCAGAGAGCATTACAG ACAGCCTTCGTCGTACTCGTCAATTGATGGTTCAGGTTAGTAGTTAGGTATCTTACCTTTCTAAACTTAATTTTTGATCG TGCTCCCTAGTTGTGATATTTTATTCCATTATTGTTGCTTTGCACTCCTTCATGAAATATGACCCTTTTATGTTGGGCTG ATTAGCATTCTCATTGTATATCTGTAGGAGGTTGAAAGAAACACAAGCACACTTATGACTCTTGGTTGGTACATTTTGTT CTCTCTCCTCTCTTTATATTTGATGAGATGGTTCTTTCATATTTCTACTTCCTTCTTTAATTTATACTGGTATTACAATT TCTTTATGGTGTATGTGAAATTTACATGAAAGAACAAATAAAAATGTATAAAATAATTATAAGCTGGCTATATAAGTCTG ATTGGAAGAAAGTATGCTGCAGGGAATGAGTTTCAAGTTAGCTGGCAGCTATTGTATGTGTTGCTTCTGGCAGCTCAATG TCTTAAATTTTACATCCTCTTTTATTTTGTTTTGAAAGCTAGCAAACTGAAGAAAATATCTATTAGTAAATTGAAAGAGT TGATCAAAACCAAATTGATCCTCAGGTTGTTTGAATGGTTAAGCTTAGTATGTGCTTGGATTATGACCTTTATGGTAATG CTGAAGTTTAAGCCAACTACCCTACATTCGTAGACATTAACATTCAATTGGCCAGAAATGAAAATAACCTGTTTCAACTT TGACCCTGGAAAAAAAGTAATTTTAGTTTCACTTTGGAAATTAATTTTCACAAATTTTCAGAACTTTTTCCATCCAAAAT GCCATGACTGAATTTGACATGGCTCATGCTCAATGAAGCATTATGTAAAGATGCTTCCTTTGTTACTGTTTGTGCTGGAA TACTTGTTAGAACTTAAGCAAAATGATATTAGTTTTGACTTGATGGATTGATATTTATTGATGTGATTATGAGGGGTATG AAACAACTTTGTTCTGCATATTTGTTTTGCAAAATTGCTTGGGTACACAGATGAATCAACTGGTGTGTTAAAAAAGGCTG AAAGTGAATATAAAGGGCATCGCTCATTGTTGATGAGAACACGAAATCTGCTCTCTACAATGCAACGTCAAGATGTCATA GACAGGTATGGAAATAAAAAAGTAAACGGATTTTGTTGTCCACCCTCTTTGCTTGGTCTTCCTATTCCTATATCCTCAAA AGTAACTCATAACTTGTCTTCAAATAGGGTGATAATTGGGCTTGGCTTTTTATTGTTCTCCCTTGCTGTTCTATATGTTG TTTCCAAGCGGATTGGACTACTTACCTTGCAGAGAAAGGTTACTGAGGCCATAAAGGCCGGTGTGGTGGGGCAGGCTGAT CTAAGACCCCAAGCTGTTGCAGATGATATGAATCTTCATCAAGTCAGAGATGATCATGTTCATAATACAGAGGCTCCTTT AGAACAAAGAATACATGATGAACTTTGATGCATTTCTAAGGAATTGTATGTTTCATTAAGAGAGATCTTTTATCTTACAA CACAATTTTAGCATCCTTGTTTCCTTAAGAATGAGAAAGTATTTGCTATCATGAGAGTTCAACAGACATTTAATACCTTT TTTTTAGAGTAATTAGGAAGTCCATTGAATTGATTGATTAGGATGCTATAGAAATTTTCTGTGTAGTAATTTTATTTGAG CTGCCTTTCAGCATGTGCAGAAGAGGTTTCATACATCTTGACAGAGTGCAAATGTTGGGAGAAGTTTTTAGCAAGAACTT ATTGTCTCTTGCTTGCTTTTTCGATGTTGGACAGCTATCTTTAAGATCTTAAACATGAACTTTTAAGAGGCATTATATAA TTAGTTAATTACAGGGCGTGGTATGATTTGCATGACATATCTATCGTATACTTAAACTTATGCTACAAGTGTAGTTCACA TGCATTGTGTTAGAATAGTGAAAAGGCTTAATCGCACTTTTGGTCCCCCACGAAAGCGATATGTGCCATCGGGGTCCCTA AACTTCAAAAATCGCATTATGCATCCCCAACGTTAATCTCCGTTAACAAATTTGGTCCCTCTCCTCCTTTCCGTTAAAAA TTAACGTTTTTTTGCTGATGTGGCTTTTTTAATTTAAATTTGAAATGAATTTTTTTTTTTATTAATTCCTCCTCCTCCTG CAACATGTTCTTCACCATCTTCATCTTTTCTTCATCAGAACCCAG
CDS sequence (LotjaGi3g1v0184500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACAAGGTTGTGGAGGAGGTGGAAAAGGTGAAGAGGGAATGGGATGAGGCTTGCGGCAAAACACAACTCCACATCAA GGCAATTGCAGACTATGGAAAATCAGGAAGACCCAAGGATGAGATAAACTCGCTTGCCAGGTTGAATGGGATGGCTCAGG ATGGCTTGGCGCTCCTTTCTTCCTTGCATTTCACCCTCGATCTCCTCGCTCCACAATTGCCCACCGAAAAGGAGGTTGAA TCTGCTCGTGTCTTGCTTGAATCCTGGAAAACCCTGTCTCAACATTTGCGGCTAAGTCTGAGGAATGCTAATCTGCAAGC CAAGGCTAACTTGAGGAAAGCTGCTCAGGAAGAGAGAGAGCTACTTCTAGGCGGTGGAGAAGAGTCTACAATTCGCAGAC GCAATTTGCAGACAAAAGCTGGAATGACATCTGCTGCAGAGAGCATTACAGACAGCCTTCGTCGTACTCGTCAATTGATG GTTCAGGAGGTTGAAAGAAACACAAGCACACTTATGACTCTTGATGAATCAACTGGTGTGTTAAAAAAGGCTGAAAGTGA ATATAAAGGGCATCGCTCATTGTTGATGAGAACACGAAATCTGCTCTCTACAATGCAACGTCAAGATGTCATAGACAGGG TGATAATTGGGCTTGGCTTTTTATTGTTCTCCCTTGCTGTTCTATATGTTGTTTCCAAGCGGATTGGACTACTTACCTTG CAGAGAAAGGTTACTGAGGCCATAAAGGCCGGTGTGGTGGGGCAGGCTGATCTAAGACCCCAAGCTGTTGCAGATGATAT GAATCTTCATCAAGTCAGAGATGATCATGTTCATAATACAGAGGCTCCTTTAGAACAAAGAATACATGATGAACTTTGA
Protein sequence (LotjaGi3g1v0184500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDKVVEEVEKVKREWDEACGKTQLHIKAIADYGKSGRPKDEINSLARLNGMAQDGLALLSSLHFTLDLLAPQLPTEKEVE SARVLLESWKTLSQHLRLSLRNANLQAKANLRKAAQEERELLLGGGEESTIRRRNLQTKAGMTSAAESITDSLRRTRQLM VQEVERNTSTLMTLDESTGVLKKAESEYKGHRSLLMRTRNLLSTMQRQDVIDRVIIGLGFLLFSLAVLYVVSKRIGLLTL QRKVTEAIKAGVVGQADLRPQAVADDMNLHQVRDDHVHNTEAPLEQRIHDEL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 213 | 213 | - | – | |
| PANTHER | 1 | 291 | 291 | 2.7E-96 | ||
| Coils | 100 | 120 | 21 | - | – | |
| Pfam | 144 | 235 | 92 | 7.8E-28 | ||
| TMHMM | 210 | 232 | 23 | - | – | |
| Phobius | 214 | 232 | 19 | - | – | |
| Phobius | 233 | 292 | 60 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | SNAP receptor activity | Acting as a marker to identify a membrane and interacting selectively with one or more SNAREs on another membrane to mediate membrane fusion. | ||
| Biological process | Retrograde vesicle-mediated transport, Golgi to ER | The directed movement of substances from the Golgi back to the endoplasmic reticulum, mediated by vesicles bearing specific protein coats such as COPI or COG. |
Expression pattern of LotjaGi3g1v0184500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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