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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0189800 |
| Transcript ID | LotjaGi3g1v0189800.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glutamate receptor; TAIR: AT2G32400.1 glutamate receptor 5; Swiss-Prot: sp|Q9SDQ4|GLR37_ARATH Glutamate receptor 3.7; TrEMBL-Plants: tr|A0A0B2RVP7|A0A0B2RVP7_GLYSO Glutamate receptor; Found in the gene: LotjaGi3g1v0189800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:27321987..27328541) extracted from Lotus japonicus Gifu genome v1.2.
TTTATTATTAAATTAATTTTACAAGAACATCATTAATTATTGGTCCCAATGAACATCAAACAATAGATATTGGTCCCAAA ATTTGCAATAACATCAACATGACAACATGTACTCTTTTGGATAAATGTCAAAAAAATGATCTTAATTCGAGAGGCTTGAA GTCTCTGCAGCATCCATTCATTCCATTGTACTCAGACTATTGCATTCTGTCAACATTCTTTTCCAAAAATGTATAATTTT CATTCATCACTGTTCATTCTCAGTTTCTCACCATCACCTAACATACTTTATCTTTGACTCACTGACCCCATTATTCTCTT CTCTTCGAATAGCTTTGAATAGAAGCTCATAACAAAGTAGACTTTCGATGCTTTACTTCACTTAGAGCAACTTTTTGCTG ACAAAAGTGCTTTTTTTCCCAGCTAAACTCATCTGGGCACCCATCAAAATGCAATCTTTCTTCAATTTCAATGAGTTTTC GGTGTTTTCAGATTCTGGGTGGGGGCAAGTTTGAGTCTTTACGGTGGAAAAATTGGTGGGTGGCTTGAAATTCAGGTCAA GTATGAAGCAGTTTATGGTTTTGCACCTTGTGGTTTGGATTTGGGTTATCTTCCTCTGTGGAACTGCTCACAGTAGAAGG CCTGAAAGTGTAAACGTTGGTGCGATTCTCACATTCGATTCAGTCATAGGTAGAGCTGCAAAGTTGGCCATGGAAATGGC TGTTTCTGATGTCAATTCTGACCCAAGAGTTCTCTTTGGGACCAAGCTCAACTTGATAATGAATGATACCATGTGCAATG CTTTTCTGGGTTCAGCTGGAGGTGGTGGCAAGCATTAACCTTAACACTTTTCTTGCTCTTTATATGTTTGTTTTTTATGT TTAAATGGATTTTTAGGGAAGGACAAGTTTCTAGCATGTGACAAAAAAATGTGTGAAGTTGGATATGTGCAGCTATTATT GTCAGTGACAAAGTCACATGATTAGATGATGCAACTTTATTTTGATGATTTTTAATTCCTTTCATTCAGGATTTTGTCTC GTGATGTTATTTATTTATTAGATTGCAATTAAAGATGTAGTTGAACCAGCAAACCCTGCCCTTTTTGCCATTTCATGGTT AAATATTCAGTTTCTTATGTTATTGACTTGTTGCATCTTAAATTCTCAGCCAATTTCTTAATTTGATGTTCTGCTTGATC ATGTTTTATCATGCTCATTACTTTCAATCTTGCTAGTTTTATTATGTCTTTATACTATGAATATTTTGTTCTATCCCAAT TATACTATACTTTTTATTTCAAGTGGTTGTTTATCAGTATCTGATTTTTCAGTTCTTACTGGTTTCTAATTCTGCTACAC CTGGTTTTAGTATGAATCAAACATGTATTTATACATATTGTCCTGAGGATGTAAAATGTCTAAACTTAAACTTAGGGTTC TTGTAATTTACATTATCTGAACTTAACTTTCTCTGTATACAGCTTTTCAGATACTTGAGAAAGGGGTTGTGGCCATAATT GGCCCTCAGTCATCCGCCCAAGCTCATATTATTTCTCAAATTGCTGATGCGGTGCAAGTTCCTCTTATTTCATATGCTGC CACTGATCCAACCCTATCCTCACTTCAATTTCCTCTCTTTTTCCGTACTATACAAAGTGACTCAGAGCAAATGACTGCTA TGGCCGATCTAATCGAATTTAATGGATGGAAAGAGGTCAATGCTGTATTCTTGGATGATGATTACGGGAGAAATGGAGTA TCTGCTTTGAGTGATGAACTTGAAAAAAGGAGATTGAAAATTGCTCACAAGCTACCTTTGAGTATTCATTTTGATGAGGA TGAAATCACCCACTTGCTCAATCAATCGAAAATTTTCGGTACCCGTGTGTATGTTGTTCATGTCAACCCTGATCCGGGAT TGAGAATTTTTTCCGTTGCTCACAAACTTCAAATGATGGCTAATGGCTATGTCTGGCTTGTCACAGATTGGCTCTCTGCT ACCCTAGATTCATTATATCCTGTGAATCAGACATCTCTCAGTATTCTCCAAGGGGTTGTTGGTCTTCGTCAACACATTCC AGATTCCAGGAAAAAAAGAGCTTTTGTTTCTCGATGGATTAAAATGCAAAAAATAAGTGTAGCAAAAACTAGTTTGAACT CCTATGGATTTTATGCTTATGACACAGTTTGGGCAGTTGCACTTTCAATTCATAAGTTTTTGGAAGTACATAAAAATATT ACCTTCTCGCTTGATGATAGCCATATGCTACCTCAGTCAGAAGGAATTGGTATTCAGCTTGAGAAGCTCAAAATCTTCAA TGGTGGATTTGACCTGGTCGATATACTCTTACAATCAAATTTTACAGGTGTGGGTGGTCAACTTTGGTTTAATTCAGACA AAAATGTCAGAAGTGGTGGTTATGATGTTATCAATATCAATCAGATGGAAATAGCTAGGGTTGGTTATTGGTCTAATCAT TCAGGGTTTTCAGTTGTACCCCCTAAAGTTGTTACAAAAAAAGAACATGGTAATGGTATTGGTAGGTTTTCCCAAGTTCA GAAGCTTGATAACATTACTTGGCCGGGTGGGGAGACAGAAAGACCCCGTGGCTGGGTGATTGCTGATAATACAAAGCCAC TGAAAATTGCAGTGCCAAGGAGAGCAAGTTTTGTCGAATTTGTAACTGAAATGCAAGATAGTCATCAAATTCAGGGGTAC TGCATTGATATCTTCAACAAATCCCTTGAATTTATTCCATATCAAGTTCCTTTCGTATTCCAGCCTGTTGGGAACGGCAA AGAAAATCCCAATTATGATGCACTCGTGAAAATGGTCAATGACAATGTAAGTAAGACACACAATGAAAAAAGAATTAGTC GCAGAATTGGTTGATCCATGTTCTATGAGATATTGGTACTTTGTGAAATCATGCTTTTATTTATGAGTTAAAGACAGTGC TTTACTGAAGAACAACTGTACTATATGTAAATATTCAGACGGATGATCAGTACTTTGCACAATTTTAGCCTATAGATTTT TAAAATCTCAAATTCTCCTTTCTGTTTTTTGCATTTTTTGGGTGGGACAGAAATTGAGTAACTGATATTGACATTATTGG TTTTGTTCAGTTATATCCAAGTAAGATAATTCCGTTAGGTCCTTCACACTGGGTGCCACTTTACACTTATTAGTTACTAA AATTAGAGTGTTGGGTTTTTTATAACCTTGTTTACAATTGAAAGTTTGGTTCAGGTATATGATGCAGTTGTTGGAGACAT TGCAATCGTGACAAACCGTACAAAGATTGTGGATTTTTCTCAGCCCTTTGCATCATCTAGCCTTGTTATTGTGGCTCCTA TCAACACTGTAAGATCAAATGCTTGGGTGTTCCTCAAACCATTTACAGCAGCCATGTGGTGTGTCATTGCTGCATCATTT ATGATGATTGGAGTGGTTATATGGATTCTTGAGCACCGAATCAATGATGACTTCCGTGGTCCTCCTCAGAGGCAAATTGT GACAATGTTTATGTAAGCCTTTCTAAAATTCTAGTAATGTTATGAAATTTTCCCATATAAGTTTTTTCTTTACCAATTAC TATTTTAAGCTTACAACTATTACTGGTATATTCAGCATGATTTGGGTCCCGTTTGGAAACACAGCTTAATTAAGCGCTTA TGGTCATAAGCGCTTGTGACATGAGCACTTATTTATTTTGTTGAAATAAATAAAAAATAAGCTATATATAAGCATAAGCT CTTTTTCATAAGCTATTGGTAGGTCATAAGCTGTTTGCATAAGCTCTCCCAAACACTGACATAAGAGTTTATGCTATCAG ATAAGCTCAAATAAGCTCTTCCAAACGGGGCCTTGATTACTTTTTTCGGACTTAGCTTATAGAATTTGATGTAGCACTAG GGGCACCCACTGTTTTATCTCGTGTTTTAGACTCTAACTCAAAGTAGTTATTTTGTTTTTCAGGTTCAGCCTCTCAACAC TGTTTAAGAGAAGTAGTAAGAAACACTGCGCTCCAAAGTCTAATAGTTCCTTTAATTCCTTTTCTTTCTTAAGATCATCA TATATTTTACAGCTTAAAATAATCCTGTGGTTCAATGGATTGGCCCAATAGTTTGTCAACATCCACTGCCCCCGTTCTTT GAGTCGTAGGAGTAAATTCTCTCCCTCTCTCTCAAATATTTGGATTACAGAAAGTTGCTAATTTGCTATGAAAATCATAA ATTTCTGTTTTCTTTTAGAATGCTTTTTATCAGTCAATATCAGTTCTACACAATGCATATTTTTGGTGTTGAATTAGTGT ATTTTTAATATCTTCATAGTAACTTTTTTATAGCATTGTCATACAAAATGCTAGTCAATGGGTGTCTTTTACTTACAGTA TGCACATTCAATCCTATTTAATTATACTCAATTCATTTCTTGTGTTTTGTCTGGAGTATCTCATTCTTTGTTGTCAGCCA GTTTTACACCCATTTGCATAATACTGTATAGACTGTAAAGTTTCAATTGAAAATTGACAATAGGAAACATGAAGAGGTAT GAATCTTTTCAGTCCTTCATGATTTATGAAGTAGTGATACTTATGGGATCTGCATTACACTTGATCTAATAATCTTTCAC CTTTTCATGAAATCAGATGAAAACACCATGAGTTCACTTTCCAAAATGGTGATGATAGTCTGGCTTTTCCTATTGATGGT GATCACGGCTAGCTATACAGCAAACCTGACTTCGATTCTTACCGTGGAGAAGCTTTCATCGCCCATCACAGGAATTGATA GCTTGATTGCAAGTAACTGGCCTATTGGATACCAAGTAGGGTCATTTGCTTACAGCTATCTGACAGATAACCTTTATGTA CCAAGTTACAGACTTGTTTCCTTAGGCTCCCCTGAGGAGTATGCTACAGCGCTGCGTAAAGGGACATCTGGTGGCGGGGT GGCGGCTATCATTGATGAGCTTCCATATGTTGAATTATTTCTGTCAAAAGAAACTGATTTCGGTATTATTGGACAGCCGT TTGCCAGAAGCAGTTGGGGATTTGTAAGTGGCCATCTGAGTAGAAGATCAAAGTGATTAGATATTATTATATATATGACT AAAAGAAAGTGCTCCAGTTTTTCTTACAACAGTTTTAGTATAGATTGTAGAAGAATAAGTGAATAGTCACTTTAGTCCAT GAAATATACAGGGTCGTTATCTTTCGTACCCCTACTAAAGAAATAGGCAAAATAGTCATTGAAAGATGAAACCGAATTTC AATTTAGTCGTTCAGGGACTAAAATGGATCGTCCTTTTTCATCTTTCATTGATTACATTGATCGTGATTTTCATCTCTCA AAGACTGAGTTGATTGCTTTTTATCTCTCAGGGAGGGACTGTTTTGCCTATTACCATATTTCAAGAACTAAGTTGACTGA CCCCAAATATGTTAAGACCAAAATGACCATTCACTTAGGGAAAAAACGGAATTCTGTTTTGTAATGGAAAAATGTCTACT AGGAAAAGTTTTGTCCAATTTTTCATTTTCAAAATCCAGAATTTCATTTGTCATTTGGCTTTGACAATAGGCATCTTGAA TCTTAGGTATGAAATGTTTGTGGCATTTCCTAACTTTTTTGGTACAATACACCAGGCTTTTCAAAGAGAATCTCCTCTTG CCCTTGACATGTCCACAGCAATTTTGAAACTCACGGAGAATGGAGAGCTGCGAAAGATACATGAGAAGTGGTTCTGTAAG ATGGGTTGCCCTGAAGAAAGGAAAAGCAACCCTAAGGTTGAACAACTTTACTTGACTAGCTTCTGGGGTCTGTATCTTTC ATGCGCTGTCGTCTCTCTTGCTGCACTTTTAATATTTCTGCTGCGGATGATTTGCCAATATGGTCGCTTCAAACAAAAAC AAAAGGATATTATCGTTTCTTCATCTTCTGAACCATCAAGCAGTCATTGTTCCCAGGTTGTTGGTAACTTCTTTAACTTC ATTGACAAGAAGGAAGAGGCCATAAAGAAAATGTTCGCTCAATGTGACAATAGTCACAGCCCCAAGTGAGATGATCATTA TGATTGTGTTGCAAAAAGGCTCAAATTTGTAGATTTCAATGAACTGCTGATTTCATTGACTATATGGTAGTAACAATAGT GATAGTCATGTAATCATGTATATATTATGGAAAAAACTTATGCTGCGAGAGTTAGCCTCACTATGATATGGATGTTTTCC GCTGGAATAGTATTGACTCCGGTTGTAAGTTATCTAAGAATGTGGACATCCACATCAATCTCCCCACCTTTGAAATGACA AAAAATTGGTTCATGGATTGCACCTTTGTATAATGATAAAATGATAATGTTCCTTTAACATATTAAGGTGCGCACTACCC TTTAATGCGACCCCTGTGATTTCACTTGTTTGTTTCACATCTTTGTCATATTGCAATCCCTCAAGGTCACATCTTTGACC TAGGCAGTCTCTACTTTCTGAAACACATGATATCTCAACAAATACAAAAAGGAAAACTTTAGAAAATGAATTCTC
CDS sequence (LotjaGi3g1v0189800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGCAGTTTATGGTTTTGCACCTTGTGGTTTGGATTTGGGTTATCTTCCTCTGTGGAACTGCTCACAGTAGAAGGCC TGAAAGTGTAAACGTTGGTGCGATTCTCACATTCGATTCAGTCATAGGTAGAGCTGCAAAGTTGGCCATGGAAATGGCTG TTTCTGATGTCAATTCTGACCCAAGAGTTCTCTTTGGGACCAAGCTCAACTTGATAATGAATGATACCATGTGCAATGCT TTTCTGGGTTCAGCTGGAGCTTTTCAGATACTTGAGAAAGGGGTTGTGGCCATAATTGGCCCTCAGTCATCCGCCCAAGC TCATATTATTTCTCAAATTGCTGATGCGGTGCAAGTTCCTCTTATTTCATATGCTGCCACTGATCCAACCCTATCCTCAC TTCAATTTCCTCTCTTTTTCCGTACTATACAAAGTGACTCAGAGCAAATGACTGCTATGGCCGATCTAATCGAATTTAAT GGATGGAAAGAGGTCAATGCTGTATTCTTGGATGATGATTACGGGAGAAATGGAGTATCTGCTTTGAGTGATGAACTTGA AAAAAGGAGATTGAAAATTGCTCACAAGCTACCTTTGAGTATTCATTTTGATGAGGATGAAATCACCCACTTGCTCAATC AATCGAAAATTTTCGGTACCCGTGTGTATGTTGTTCATGTCAACCCTGATCCGGGATTGAGAATTTTTTCCGTTGCTCAC AAACTTCAAATGATGGCTAATGGCTATGTCTGGCTTGTCACAGATTGGCTCTCTGCTACCCTAGATTCATTATATCCTGT GAATCAGACATCTCTCAGTATTCTCCAAGGGGTTGTTGGTCTTCGTCAACACATTCCAGATTCCAGGAAAAAAAGAGCTT TTGTTTCTCGATGGATTAAAATGCAAAAAATAAGTGTAGCAAAAACTAGTTTGAACTCCTATGGATTTTATGCTTATGAC ACAGTTTGGGCAGTTGCACTTTCAATTCATAAGTTTTTGGAAGTACATAAAAATATTACCTTCTCGCTTGATGATAGCCA TATGCTACCTCAGTCAGAAGGAATTGGTATTCAGCTTGAGAAGCTCAAAATCTTCAATGGTGGATTTGACCTGGTCGATA TACTCTTACAATCAAATTTTACAGGTGTGGGTGGTCAACTTTGGTTTAATTCAGACAAAAATGTCAGAAGTGGTGGTTAT GATGTTATCAATATCAATCAGATGGAAATAGCTAGGGTTGGTTATTGGTCTAATCATTCAGGGTTTTCAGTTGTACCCCC TAAAGTTGTTACAAAAAAAGAACATGGTAATGGTATTGGTAGGTTTTCCCAAGTTCAGAAGCTTGATAACATTACTTGGC CGGGTGGGGAGACAGAAAGACCCCGTGGCTGGGTGATTGCTGATAATACAAAGCCACTGAAAATTGCAGTGCCAAGGAGA GCAAGTTTTGTCGAATTTGTAACTGAAATGCAAGATAGTCATCAAATTCAGGGGTACTGCATTGATATCTTCAACAAATC CCTTGAATTTATTCCATATCAAGTTCCTTTCGTATTCCAGCCTGTTGGGAACGGCAAAGAAAATCCCAATTATGATGCAC TCGTGAAAATGGTCAATGACAATGTATATGATGCAGTTGTTGGAGACATTGCAATCGTGACAAACCGTACAAAGATTGTG GATTTTTCTCAGCCCTTTGCATCATCTAGCCTTGTTATTGTGGCTCCTATCAACACTGTAAGATCAAATGCTTGGGTGTT CCTCAAACCATTTACAGCAGCCATGTGGTGTGTCATTGCTGCATCATTTATGATGATTGGAGTGGTTATATGGATTCTTG AGCACCGAATCAATGATGACTTCCGTGGTCCTCCTCAGAGGCAAATTGTGACAATGTTTATGTTCAGCCTCTCAACACTG TTTAAGAGAAGTAGTAAGAAACACTGCGCTCCAAAGTCTAATAGTTCCTTTAATTCCTTTTCTTTCTTAAGATCATCATA TATTTTACAGCTTAAAATAATCCTGTGGTTCAATGGATTGGCCCAATAG
Protein sequence (LotjaGi3g1v0189800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKQFMVLHLVVWIWVIFLCGTAHSRRPESVNVGAILTFDSVIGRAAKLAMEMAVSDVNSDPRVLFGTKLNLIMNDTMCNA FLGSAGAFQILEKGVVAIIGPQSSAQAHIISQIADAVQVPLISYAATDPTLSSLQFPLFFRTIQSDSEQMTAMADLIEFN GWKEVNAVFLDDDYGRNGVSALSDELEKRRLKIAHKLPLSIHFDEDEITHLLNQSKIFGTRVYVVHVNPDPGLRIFSVAH KLQMMANGYVWLVTDWLSATLDSLYPVNQTSLSILQGVVGLRQHIPDSRKKRAFVSRWIKMQKISVAKTSLNSYGFYAYD TVWAVALSIHKFLEVHKNITFSLDDSHMLPQSEGIGIQLEKLKIFNGGFDLVDILLQSNFTGVGGQLWFNSDKNVRSGGY DVININQMEIARVGYWSNHSGFSVVPPKVVTKKEHGNGIGRFSQVQKLDNITWPGGETERPRGWVIADNTKPLKIAVPRR ASFVEFVTEMQDSHQIQGYCIDIFNKSLEFIPYQVPFVFQPVGNGKENPNYDALVKMVNDNVYDAVVGDIAIVTNRTKIV DFSQPFASSSLVIVAPINTVRSNAWVFLKPFTAAMWCVIAASFMMIGVVIWILEHRINDDFRGPPQRQIVTMFMFSLSTL FKRSSKKHCAPKSNSSFNSFSFLRSSYILQLKIILWFNGLAQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 24 | 24 | - | – | |
| SignalP_EUK | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| Phobius | 6 | 19 | 14 | - | – | |
| Phobius | 20 | 24 | 5 | - | – | |
| PANTHER | 20 | 652 | 633 | 0.0 | – | |
| PANTHER | 20 | 652 | 633 | 0.0 | – | |
| Phobius | 25 | 592 | 568 | - | – | |
| SUPERFAMILY | 25 | 455 | 431 | 1.55E-84 | ||
| CDD | 31 | 425 | 395 | 5.15179E-121 | – | |
| PRINTS | 43 | 59 | 17 | 1.3E-7 | – | |
| Pfam | 47 | 407 | 361 | 9.1E-79 | ||
| Gene3D | 48 | 398 | 351 | 1.4E-86 | – | |
| PRINTS | 103 | 131 | 29 | 1.3E-7 | – | |
| Gene3D | 145 | 421 | 277 | 1.4E-86 | – | |
| PRINTS | 318 | 330 | 13 | 1.3E-7 | – | |
| SUPERFAMILY | 452 | 601 | 150 | 7.93E-24 | – | |
| SMART | 474 | 679 | 206 | 3.3E-6 | ||
| Pfam | 487 | 574 | 88 | 6.5E-10 | ||
| Gene3D | 495 | 569 | 75 | 2.8E-30 | – | |
| Gene3D | 570 | 579 | 10 | 2.8E-30 | – | |
| Gene3D | 580 | 655 | 76 | 2.8E-30 | – | |
| TMHMM | 591 | 613 | 23 | - | – | |
| Pfam | 593 | 648 | 56 | 4.6E-8 | ||
| Phobius | 593 | 613 | 21 | - | – | |
| Phobius | 614 | 682 | 69 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ionotropic glutamate receptor activity | Catalysis of the transmembrane transfer of an ion by a channel that opens when glutamate has been bound by the channel complex or one of its constituent parts. | ||
| Molecular function | Ligand-gated ion channel activity | Enables the transmembrane transfer of an ion by a channel that opens when a specific ligand has been bound by the channel complex or one of its constituent parts. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi3g1v0189800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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