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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0190300 |
| Transcript ID | LotjaGi3g1v0190300.10 |
| Related isoforms 9 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Homeobox-leucine zipper family protein; TAIR: AT1G05230.1 homeodomain GLABROUS 2; Swiss-Prot: sp|Q94C37|HDG2_ARATH Homeobox-leucine zipper protein HDG2; TrEMBL-Plants: tr|A0A0S3SH64|A0A0S3SH64_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0190300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:27416851..27422452) extracted from Lotus japonicus Gifu genome v1.2.
ATGCCCGCTGGTATTATGATACCTGCGATGAACATGCCCTCAATGCTTGGAAGAAACGGTGACGTTGGTGGCAGTTTTGG ATTTTCTTCAAGTCTCTCTCTTTCCCAGGTGTGTCACTGCTCCTTTCTCTTGAGTGAATGTGGTGAAAAATTATGATTAA TCCAAAGTTATGGTGAACCGACACAAAAATTAAGAGAAGTTACTTTAGTTAACCGTGATTTTATTTCATTGTAATTTTTA GAACTTGTCTATATTCTCTTAATTTTTCATTATAATTATTATTTTCTCCTCAATTTTATCATAATTATTTTGACTAATGT CTTTGGTATGCTCTATTTGACTTTCTAAACCTTGAAAGTGTCCTTTTTTTTTGTGCGAGTCAAATTTTAGTCTCTTAGTT AAGCAATCTCTCTTTCTTGTATTTTACCGGTCGAGATATCCTTCTCGTAATTCGAAAACCGCGTTATTCTTTACGTTTTG CACTGTTTGAAGCTATACAACTTTCTTTCCTCAAAAACATCAACCTAGTCAAATCCTCATGCGTCTTTTTCATCTCCTCT AGCTACGTATAAATGTGTTTCCAATTAGAATTTTTTTTGAGAAAAAGAGGCGTTGTTATCCCTATTTTGCTGTTGTTGAT TTGTTGAGTGTACTTTTTTATGCTATAAATATGTTTTTTTGTTAGATTGAAAACAATAAGCATTCGGAATCTTAAAGATC TGACTCAGATATGTTCCAGCCGCACCTAATGGAAGCTCATCATCAGCTCCACCACCACCTTGACATGGCTCCTCAGAACA CCACCTCCGAGAGCGACATCGCCGCCGCGGTGAGAATCCGTGGAGAAGACGAGTTCGACAGTGCCACCAAGTCCGGCAGC GAAAACCAAGAAGGTGGCGCCTCTGGAGGAGACCAGGACCCTCGTCCTAACAAGAAAAAGCGCTACCACCGCCACACTCA GCACCAGATCCAGGAAATGGAATCGTATGTACCACCCATTTGAAAAATCTCCATTGAATTTTCCTAAAAATTTAATTTAA TTTTTGTCTGTTCAGTTTTTTCAAGGAGTGCCCACACCCTGATGACAAGCAGAGGAAGGAGTTGAGCAGGGAGTTAGGGT TAGAGCCATTGCAGGTCAAGTTTTGGTTCCAGAACAAGCGCACTCAGATGAAGGTACTTCATTAATTTGAACTTTTGTTT TTATTTAGAGCAGGTTGTAATGAGAATGGGGTTTTGGTTTTTGACAGACACAGCATGAGAGGCAAGAGAACACGCAGCTT AGGACTGACAATGACAAGCTTCGTGCGGATAACATGAGGTTGAGGGAAGCTCTTAGCAATTCTTCGTGTCCTAATTGTGG TGGACCAACCGCTATTGGAGAAATGTCATTTGATGAACATCACTTGAGGCTTGAAAATGCCAGGCTAAGAGAAGAGGTAC AAGATTTCAGAAACAACTCCAAGTTTATCCAATAAACTTGGATTTCGTGCAAATGTGATTTTATGTGTCCTCAAATGTGA TTTTTGTGGCTGCTTCCATGATTTTAACTTCATCTGATCTCTCACTATGTGTTGAAACATCCGCAAAATATATCTTAAGA TATCAATACCGAAGTTAGAATTAATCACATTAAATTTCATAACAATAAAACAAAATATATTTTTAACACATTATTTAACG TGAATACTCATTGACTTCAATGAAATTCTAACACTAGAATAGTCTATTTGGATTTATATATGCAAACGAGAATAGTTGTT TAAACTACATTTATAACGTTTTTTTTTCCCTATATGAGGTTAAACAATCAAACTCTGGGTTTTGATGCCCCTAGCATCAC CATTTATATATTCTTTTTTAATGATAAAAAAAAAATATTTCTGTTTTCCTACTACATCATATTACATAGATGTATCTTTT CTCTTTACCTTGTTATACAAAGTTTGAGTGTTTACCAAATATTTTTTATTTCTACATGAGAGTTTGGGACACTCGTTACT GGATTAATTTTTTTAACTCTTCTCTTCTCTTGGTGTTTATCCCCTAGATTGATAGGATTTCAGCCATTGCTGCAAAGTAT GTGGGGAAGCCGGTGGTGAGCTACCCACTCCTTTCTCCGCCATCTGCTCCTTCGTGTCCTCTAGAACTCGGAATAGGCGG CTTTGGAGGCCAACCAGGCGTTGGTGGTGACATGTATGGAGCCGGAGAGCTTCTCAGGTCAATCAGTGGACCTACTGAAG CTGACAAACCAATTATAATAGAGCTCGCTGTCGCAGCCATGGAGGAGCTCATTGGAATGGCACAAATGGGTGAGCCTCTT TGGCTGACCAAGCTGGATGGCACCACAACCGTGCTCAATGAGGATGAATACATCAGGTCCTTTCCCCGAGGAATTGGTCC TAAGCCAGATGGGTTCAAGTGTGAGGCTTCACGAGAAACTTCTGTTGTCATCATGAACCATGTTAACCTGGTTGAGATTC TGATGGATGTGGTACATATATACCCTTCTCATCTCACATTATATACCGTGCATTGATTTATTGTTTTTTTAGTCTTTGAC TTTATATATTCTGTTATGGTTTTCAGAACCAATGGTCCACAGTGTTCTCTGGTATCGTCTCAAGGGCAATGACTCTAGAA GTGCTATCAACTGGGGTAGCGGGAAACTACAATGGTGCCTTGCAAGTGGTATTTATCTATAAAACATTCATTTTCTTTTA TCATAATAGTGCAACACAGTACTTAAGACATCTAAACAGTGTAGATATCCGACATTTTCACAACTTATTTTCTATATCTT CTTTTCTTCTCTTTTTGTTAGTGTCTGTTTGTTGTCTGCACTTTGTTAGAATTTCTATTAATGATTTTCCTATTTGTTAA CCATGCAGTTAAACATGATTGGATTTGTTTGATTCTGCAGATGACAGCTGAACTGCAAGTGCCTTCACCTCTTGTGCCAA CTAGGGAGAGTTATTTTGTGAGGTATTGTAAGCAGCATGCTGATGGGACTTGGGCAGTGGTGGATGTGTCCTTGGATAAT TTGCGCCCTAGTCCTTCTGCTAGATGTAGAAGAAGGCCTTCTGGTTGCTTAATCCAAGAAATGCCCAATGGCTACTCAAA GGTTAGATAACTTTTATCATATTAATGGAGGAATTATGTATAAACATTCCAAGAATGATAAAGGAAAATATATGATTTGA TGCAATAGAAATAAGGAAAATCTTATTTATTGCGAAGGATTATTTTACAAAACGCAATAATGGTTATGAAATCGACATTG TTTTCTTTACCTATTATCATCATGACCCATGGTTTTAAAAAATTGATTGAACACTTTTGAAATTTTGTGTAATGTTGTCG TACTAATTTGCAATGCTCAATAAAGAAAAAGAGAGAAAAATATGATGTATGTGGTTGCATTTGGTAATTGTTTTTGTTCT AAATGTGTCTTACCTTTGAAGCTAATGAATGATGTTTGCCCCTAGGTCACCTGGGTTGAGCATGTAGAAGTGGATGAAAG AGGTGTTCACAATCTATACAAGCAGCTTGTTAGCTCTGGACATGCATTTGGTGCAAAACGTTGGATTTCAACCTTAGATC GACAATGTGAAAGGCTTGCTAGTGCCATGGCAACTAACATTCCCACAGTTGATGTTGGCGGTATCATTGATTCCTAAACT AATTTCTTTTGGGTTTGGTATTTTTCTTGATTAAGTAACTAACCATATAATTATATTCTCATTGATATGTTAGTGATAAC AAACCAAGATGGGAGAAAGAGCATGTTGAAACTGGCTGAGAGGATGGTTATAAGCTTTTGTGCTGGAGTCAGTGCTTCCA CTGCTCACACATGGACAACAATCTCCGGGACTGGAGCTGAAACTGATGATGTTCGGGTCATGACCCGAAAGAGTGTGGAT GACCCAGGTAGGCCTCCGGGTATCGTCCTTAGTGCTGCAACTTCTTTTTGGCTTCCAGTGCCACCTAAGAGGGTCTTTGA ATTTCTCCGCGATGAGAACTCTAGAAGTGAGGTCAGTAATAGCATTTTCTAATAACTTATTTTTTCTCATAATCAATTTT GTCACACATAAAAATAATTCGGAATTGATTTTGACTTTTCAAAACCTTCTATAAAAAATTCAATCATGCGACAATTATGC ACCTAATCATATATATCTTCCATACCTAAAGATTTAGGCTGCATTATTGTGTGGTCAGAGGTTACTAGACGTCCTTGATT TAGTAAAGTTGCTTAGTTTGGTTTGTGATGTATCAGTATTCATATAAAGTACTCATGTATTTTAGGTATCATATGCGTCT AGTTTTCATGCACTCAATTATCTTATACCAGATTTCGTTATATATCACGTATATTTCATTTTCAAATTGCCAAAGAGACA GTGTGATACAGGCATACAGCTTCCAGGTTTTAATGAAGGCCCGGAATCTTTCACTTCCGATAGCTTAGTTCCATTTTATT TCATGTCATTTGACTTTTTAAAAATTAATTATTTTATAATTTTGTGTCTTTATTACATAAAAGTACAAATTTTAGAAAAA CTTAATAAAAGTTTAAGAACAAATTTAATTGAGATATTTTGATCGAGTTATTGCGTAAATTATTTTTACAATATCACCCC ATAGTAATTAAACTTTTAAATAGGAGTTCACTTTTTTACTGGAGGTATTTAACCAAGCAACGGAATATTAAAAAAAAATG ATATTAGGGTTATTAAATTCGTGAATTAGAGCACAAATTTTGTTTGTCAGATTGAATTTTATACCTCCAATAATTTTCAG ATCAGAAAGTATTTTTTTATTTTAAATTAAATAGAAATGCACATAATGATTTCTGAGCATGAAACTTGACGTGACATGAA ACTATTAGATGTGATAATTCTACAACTTTTAACCTCTTGCTGATTACTAATTATATTTACTCTTTTTATCCTCATCTTGG TTACATTTTTTTCTTCATGATTCATCTAACTTTTTCTACCCTTGAAAACAGTGGGATATCCTTTCCAATGGTGGAGTAGT TCAAGAAATGGCACACATTGCTAACGGACGAGATACTGGAAATTGTGTCTCTCTACTTCGAGTGAATGTAAGTTAATTAA TATTGACCTTACCTCACATTCACATTACCATTTTATTAACAAACCTACAACCATTCATCATTTTCCAGTCAAACTAAATA AATTCTGACTCAATTCGTGTCCCACTAATTATGCAGAGTGCTAATTCTAGCCAAAGTAACATGTTAATACTGCAAGAGAG TTGCACGGACTCTACGGGCTCATTCGTGATCTATGCTCCTGTGGACATTGTTGCTATGAATGTGGTTCTAAATGGAGGGG ACCCGGACTATGTAGCCCTTCTACCTTCAGGGTTTGCTGTGCTCCCAGATGGGACCACAGCACATGGAGGTGGCATTGGC GAAACTGGCCATGGTGGTTCGCTTTTAACTGTTGCGTTTCAGATTTTGGTGGATTCAGTTCCGACGGCAAAGCTTTCTCT TGGATCTGTTGCGACGGTTAATAATCTCATTGCTTGCACTGTTGAGAGGATTAAGGCTGCCTTGTCTGGTGAAGTTGCAT GA
CDS sequence (LotjaGi3g1v0190300.10) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCCAGCCGCACCTAATGGAAGCTCATCATCAGCTCCACCACCACCTTGACATGGCTCCTCAGAACACCACCTCCGA GAGCGACATCGCCGCCGCGGTGAGAATCCGTGGAGAAGACGAGTTCGACAGTGCCACCAAGTCCGGCAGCGAAAACCAAG AAGGTGGCGCCTCTGGAGGAGACCAGGACCCTCGTCCTAACAAGAAAAAGCGCTACCACCGCCACACTCAGCACCAGATC CAGGAAATGGAATCTTTTTTCAAGGAGTGCCCACACCCTGATGACAAGCAGAGGAAGGAGTTGAGCAGGGAGTTAGGGTT AGAGCCATTGCAGGTCAAGTTTTGGTTCCAGAACAAGCGCACTCAGATGAAGACACAGCATGAGAGGCAAGAGAACACGC AGCTTAGGACTGACAATGACAAGCTTCGTGCGGATAACATGAGGTTGAGGGAAGCTCTTAGCAATTCTTCGTGTCCTAAT TGTGGTGGACCAACCGCTATTGGAGAAATGTCATTTGATGAACATCACTTGAGGCTTGAAAATGCCAGGCTAAGAGAAGA GATTGATAGGATTTCAGCCATTGCTGCAAAGTATGTGGGGAAGCCGGTGGTGAGCTACCCACTCCTTTCTCCGCCATCTG CTCCTTCGTGTCCTCTAGAACTCGGAATAGGCGGCTTTGGAGGCCAACCAGGCGTTGGTGGTGACATGTATGGAGCCGGA GAGCTTCTCAGGTCAATCAGTGGACCTACTGAAGCTGACAAACCAATTATAATAGAGCTCGCTGTCGCAGCCATGGAGGA GCTCATTGGAATGGCACAAATGGGTGAGCCTCTTTGGCTGACCAAGCTGGATGGCACCACAACCGTGCTCAATGAGGATG AATACATCAGGTCCTTTCCCCGAGGAATTGGTCCTAAGCCAGATGGGTTCAAGTGTGAGGCTTCACGAGAAACTTCTGTT GTCATCATGAACCATGTTAACCTGGTTGAGATTCTGATGGATGTGAACCAATGGTCCACAGTGTTCTCTGGTATCGTCTC AAGGGCAATGACTCTAGAAGTGCTATCAACTGGGGTAGCGGGAAACTACAATGGTGCCTTGCAAGTGATGACAGCTGAAC TGCAAGTGCCTTCACCTCTTGTGCCAACTAGGGAGAGTTATTTTGTGAGGTATTGTAAGCAGCATGCTGATGGGACTTGG GCAGTGGTGGATGTGTCCTTGGATAATTTGCGCCCTAGTCCTTCTGCTAGATGTAGAAGAAGGCCTTCTGGTTGCTTAAT CCAAGAAATGCCCAATGGCTACTCAAAGGTCACCTGGGTTGAGCATGTAGAAGTGGATGAAAGAGGTGTTCACAATCTAT ACAAGCAGCTTGTTAGCTCTGGACATGCATTTGGTGCAAAACGTTGGATTTCAACCTTAGATCGACAATGTGAAAGGCTT GCTAGTGCCATGGCAACTAACATTCCCACAGTTGATGTTGGCGTGATAACAAACCAAGATGGGAGAAAGAGCATGTTGAA ACTGGCTGAGAGGATGGTTATAAGCTTTTGTGCTGGAGTCAGTGCTTCCACTGCTCACACATGGACAACAATCTCCGGGA CTGGAGCTGAAACTGATGATGTTCGGGTCATGACCCGAAAGAGTGTGGATGACCCAGGTAGGCCTCCGGGTATCGTCCTT AGTGCTGCAACTTCTTTTTGGCTTCCAGTGCCACCTAAGAGGGTCTTTGAATTTCTCCGCGATGAGAACTCTAGAAGTGA GTGGGATATCCTTTCCAATGGTGGAGTAGTTCAAGAAATGGCACACATTGCTAACGGACGAGATACTGGAAATTGTGTCT CTCTACTTCGAGTGAATAGTGCTAATTCTAGCCAAAGTAACATGTTAATACTGCAAGAGAGTTGCACGGACTCTACGGGC TCATTCGTGATCTATGCTCCTGTGGACATTGTTGCTATGAATGTGGTTCTAAATGGAGGGGACCCGGACTATGTAGCCCT TCTACCTTCAGGGTTTGCTGTGCTCCCAGATGGGACCACAGCACATGGAGGTGGCATTGGCGAAACTGGCCATGGTGGTT CGCTTTTAACTGTTGCGTTTCAGATTTTGGTGGATTCAGTTCCGACGGCAAAGCTTTCTCTTGGATCTGTTGCGACGGTT AATAATCTCATTGCTTGCACTGTTGAGAGGATTAAGGCTGCCTTGTCTGGTGAAGTTGCATGA
Protein sequence (LotjaGi3g1v0190300.10) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFQPHLMEAHHQLHHHLDMAPQNTTSESDIAAAVRIRGEDEFDSATKSGSENQEGGASGGDQDPRPNKKKRYHRHTQHQI QEMESFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERQENTQLRTDNDKLRADNMRLREALSNSSCPN CGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVSYPLLSPPSAPSCPLELGIGGFGGQPGVGGDMYGAG ELLRSISGPTEADKPIIIELAVAAMEELIGMAQMGEPLWLTKLDGTTTVLNEDEYIRSFPRGIGPKPDGFKCEASRETSV VIMNHVNLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAELQVPSPLVPTRESYFVRYCKQHADGTW AVVDVSLDNLRPSPSARCRRRPSGCLIQEMPNGYSKVTWVEHVEVDERGVHNLYKQLVSSGHAFGAKRWISTLDRQCERL ASAMATNIPTVDVGVITNQDGRKSMLKLAERMVISFCAGVSASTAHTWTTISGTGAETDDVRVMTRKSVDDPGRPPGIVL SAATSFWLPVPPKRVFEFLRDENSRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDSTG SFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAVLPDGTTAHGGGIGETGHGGSLLTVAFQILVDSVPTAKLSLGSVATV NNLIACTVERIKAALSGEVA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 33 | 738 | 706 | 0.0 | – | |
| PANTHER | 33 | 738 | 706 | 0.0 | ||
| MobiDBLite | 38 | 78 | 41 | - | – | |
| Gene3D | 41 | 125 | 85 | 1.1E-19 | – | |
| SUPERFAMILY | 58 | 126 | 69 | 1.38E-19 | ||
| ProSiteProfiles | 66 | 126 | 61 | 16.957 | ||
| SMART | 67 | 130 | 64 | 4.8E-19 | ||
| Pfam | 69 | 124 | 56 | 8.4E-18 | ||
| CDD | 69 | 127 | 59 | 6.3536E-20 | ||
| ProSitePatterns | 101 | 124 | 24 | - | ||
| Coils | 132 | 152 | 21 | - | – | |
| ProSiteProfiles | 250 | 482 | 233 | 44.132 | ||
| SUPERFAMILY | 250 | 481 | 232 | 4.18E-35 | – | |
| CDD | 254 | 478 | 225 | 1.62499E-132 | – | |
| SMART | 259 | 479 | 221 | 3.2E-61 | ||
| Pfam | 260 | 479 | 220 | 8.5E-58 | ||
| Gene3D | 347 | 467 | 121 | 2.2E-5 | ||
| SUPERFAMILY | 499 | 732 | 234 | 1.54E-24 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Lipid binding | Interacting selectively and non-covalently with a lipid. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi3g1v0190300.10, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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