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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0190300 |
Transcript ID | LotjaGi3g1v0190300.9 |
Related isoforms 9 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Homeobox-leucine zipper family protein; TAIR: AT1G05230.1 homeodomain GLABROUS 2; Swiss-Prot: sp|Q94C37|HDG2_ARATH Homeobox-leucine zipper protein HDG2; TrEMBL-Plants: tr|A0A0S3SH64|A0A0S3SH64_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0190300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:27416851..27422452) extracted from Lotus japonicus Gifu genome v1.2.
ATGCCCGCTGGTATTATGATACCTGCGATGAACATGCCCTCAATGCTTGGAAGAAACGGTGACGTTGGTGGCAGTTTTGG ATTTTCTTCAAGTCTCTCTCTTTCCCAGGTGTGTCACTGCTCCTTTCTCTTGAGTGAATGTGGTGAAAAATTATGATTAA TCCAAAGTTATGGTGAACCGACACAAAAATTAAGAGAAGTTACTTTAGTTAACCGTGATTTTATTTCATTGTAATTTTTA GAACTTGTCTATATTCTCTTAATTTTTCATTATAATTATTATTTTCTCCTCAATTTTATCATAATTATTTTGACTAATGT CTTTGGTATGCTCTATTTGACTTTCTAAACCTTGAAAGTGTCCTTTTTTTTTGTGCGAGTCAAATTTTAGTCTCTTAGTT AAGCAATCTCTCTTTCTTGTATTTTACCGGTCGAGATATCCTTCTCGTAATTCGAAAACCGCGTTATTCTTTACGTTTTG CACTGTTTGAAGCTATACAACTTTCTTTCCTCAAAAACATCAACCTAGTCAAATCCTCATGCGTCTTTTTCATCTCCTCT AGCTACGTATAAATGTGTTTCCAATTAGAATTTTTTTTGAGAAAAAGAGGCGTTGTTATCCCTATTTTGCTGTTGTTGAT TTGTTGAGTGTACTTTTTTATGCTATAAATATGTTTTTTTGTTAGATTGAAAACAATAAGCATTCGGAATCTTAAAGATC TGACTCAGATATGTTCCAGCCGCACCTAATGGAAGCTCATCATCAGCTCCACCACCACCTTGACATGGCTCCTCAGAACA CCACCTCCGAGAGCGACATCGCCGCCGCGGTGAGAATCCGTGGAGAAGACGAGTTCGACAGTGCCACCAAGTCCGGCAGC GAAAACCAAGAAGGTGGCGCCTCTGGAGGAGACCAGGACCCTCGTCCTAACAAGAAAAAGCGCTACCACCGCCACACTCA GCACCAGATCCAGGAAATGGAATCGTATGTACCACCCATTTGAAAAATCTCCATTGAATTTTCCTAAAAATTTAATTTAA TTTTTGTCTGTTCAGTTTTTTCAAGGAGTGCCCACACCCTGATGACAAGCAGAGGAAGGAGTTGAGCAGGGAGTTAGGGT TAGAGCCATTGCAGGTCAAGTTTTGGTTCCAGAACAAGCGCACTCAGATGAAGGTACTTCATTAATTTGAACTTTTGTTT TTATTTAGAGCAGGTTGTAATGAGAATGGGGTTTTGGTTTTTGACAGACACAGCATGAGAGGCAAGAGAACACGCAGCTT AGGACTGACAATGACAAGCTTCGTGCGGATAACATGAGGTTGAGGGAAGCTCTTAGCAATTCTTCGTGTCCTAATTGTGG TGGACCAACCGCTATTGGAGAAATGTCATTTGATGAACATCACTTGAGGCTTGAAAATGCCAGGCTAAGAGAAGAGGTAC AAGATTTCAGAAACAACTCCAAGTTTATCCAATAAACTTGGATTTCGTGCAAATGTGATTTTATGTGTCCTCAAATGTGA TTTTTGTGGCTGCTTCCATGATTTTAACTTCATCTGATCTCTCACTATGTGTTGAAACATCCGCAAAATATATCTTAAGA TATCAATACCGAAGTTAGAATTAATCACATTAAATTTCATAACAATAAAACAAAATATATTTTTAACACATTATTTAACG TGAATACTCATTGACTTCAATGAAATTCTAACACTAGAATAGTCTATTTGGATTTATATATGCAAACGAGAATAGTTGTT TAAACTACATTTATAACGTTTTTTTTTCCCTATATGAGGTTAAACAATCAAACTCTGGGTTTTGATGCCCCTAGCATCAC CATTTATATATTCTTTTTTAATGATAAAAAAAAAATATTTCTGTTTTCCTACTACATCATATTACATAGATGTATCTTTT CTCTTTACCTTGTTATACAAAGTTTGAGTGTTTACCAAATATTTTTTATTTCTACATGAGAGTTTGGGACACTCGTTACT GGATTAATTTTTTTAACTCTTCTCTTCTCTTGGTGTTTATCCCCTAGATTGATAGGATTTCAGCCATTGCTGCAAAGTAT GTGGGGAAGCCGGTGGTGAGCTACCCACTCCTTTCTCCGCCATCTGCTCCTTCGTGTCCTCTAGAACTCGGAATAGGCGG CTTTGGAGGCCAACCAGGCGTTGGTGGTGACATGTATGGAGCCGGAGAGCTTCTCAGGTCAATCAGTGGACCTACTGAAG CTGACAAACCAATTATAATAGAGCTCGCTGTCGCAGCCATGGAGGAGCTCATTGGAATGGCACAAATGGGTGAGCCTCTT TGGCTGACCAAGCTGGATGGCACCACAACCGTGCTCAATGAGGATGAATACATCAGGTCCTTTCCCCGAGGAATTGGTCC TAAGCCAGATGGGTTCAAGTGTGAGGCTTCACGAGAAACTTCTGTTGTCATCATGAACCATGTTAACCTGGTTGAGATTC TGATGGATGTGGTACATATATACCCTTCTCATCTCACATTATATACCGTGCATTGATTTATTGTTTTTTTAGTCTTTGAC TTTATATATTCTGTTATGGTTTTCAGAACCAATGGTCCACAGTGTTCTCTGGTATCGTCTCAAGGGCAATGACTCTAGAA GTGCTATCAACTGGGGTAGCGGGAAACTACAATGGTGCCTTGCAAGTGGTATTTATCTATAAAACATTCATTTTCTTTTA TCATAATAGTGCAACACAGTACTTAAGACATCTAAACAGTGTAGATATCCGACATTTTCACAACTTATTTTCTATATCTT CTTTTCTTCTCTTTTTGTTAGTGTCTGTTTGTTGTCTGCACTTTGTTAGAATTTCTATTAATGATTTTCCTATTTGTTAA CCATGCAGTTAAACATGATTGGATTTGTTTGATTCTGCAGATGACAGCTGAACTGCAAGTGCCTTCACCTCTTGTGCCAA CTAGGGAGAGTTATTTTGTGAGGTATTGTAAGCAGCATGCTGATGGGACTTGGGCAGTGGTGGATGTGTCCTTGGATAAT TTGCGCCCTAGTCCTTCTGCTAGATGTAGAAGAAGGCCTTCTGGTTGCTTAATCCAAGAAATGCCCAATGGCTACTCAAA GGTTAGATAACTTTTATCATATTAATGGAGGAATTATGTATAAACATTCCAAGAATGATAAAGGAAAATATATGATTTGA TGCAATAGAAATAAGGAAAATCTTATTTATTGCGAAGGATTATTTTACAAAACGCAATAATGGTTATGAAATCGACATTG TTTTCTTTACCTATTATCATCATGACCCATGGTTTTAAAAAATTGATTGAACACTTTTGAAATTTTGTGTAATGTTGTCG TACTAATTTGCAATGCTCAATAAAGAAAAAGAGAGAAAAATATGATGTATGTGGTTGCATTTGGTAATTGTTTTTGTTCT AAATGTGTCTTACCTTTGAAGCTAATGAATGATGTTTGCCCCTAGGTCACCTGGGTTGAGCATGTAGAAGTGGATGAAAG AGGTGTTCACAATCTATACAAGCAGCTTGTTAGCTCTGGACATGCATTTGGTGCAAAACGTTGGATTTCAACCTTAGATC GACAATGTGAAAGGCTTGCTAGTGCCATGGCAACTAACATTCCCACAGTTGATGTTGGCGGTATCATTGATTCCTAAACT AATTTCTTTTGGGTTTGGTATTTTTCTTGATTAAGTAACTAACCATATAATTATATTCTCATTGATATGTTAGTGATAAC AAACCAAGATGGGAGAAAGAGCATGTTGAAACTGGCTGAGAGGATGGTTATAAGCTTTTGTGCTGGAGTCAGTGCTTCCA CTGCTCACACATGGACAACAATCTCCGGGACTGGAGCTGAAACTGATGATGTTCGGGTCATGACCCGAAAGAGTGTGGAT GACCCAGGTAGGCCTCCGGGTATCGTCCTTAGTGCTGCAACTTCTTTTTGGCTTCCAGTGCCACCTAAGAGGGTCTTTGA ATTTCTCCGCGATGAGAACTCTAGAAGTGAGGTCAGTAATAGCATTTTCTAATAACTTATTTTTTCTCATAATCAATTTT GTCACACATAAAAATAATTCGGAATTGATTTTGACTTTTCAAAACCTTCTATAAAAAATTCAATCATGCGACAATTATGC ACCTAATCATATATATCTTCCATACCTAAAGATTTAGGCTGCATTATTGTGTGGTCAGAGGTTACTAGACGTCCTTGATT TAGTAAAGTTGCTTAGTTTGGTTTGTGATGTATCAGTATTCATATAAAGTACTCATGTATTTTAGGTATCATATGCGTCT AGTTTTCATGCACTCAATTATCTTATACCAGATTTCGTTATATATCACGTATATTTCATTTTCAAATTGCCAAAGAGACA GTGTGATACAGGCATACAGCTTCCAGGTTTTAATGAAGGCCCGGAATCTTTCACTTCCGATAGCTTAGTTCCATTTTATT TCATGTCATTTGACTTTTTAAAAATTAATTATTTTATAATTTTGTGTCTTTATTACATAAAAGTACAAATTTTAGAAAAA CTTAATAAAAGTTTAAGAACAAATTTAATTGAGATATTTTGATCGAGTTATTGCGTAAATTATTTTTACAATATCACCCC ATAGTAATTAAACTTTTAAATAGGAGTTCACTTTTTTACTGGAGGTATTTAACCAAGCAACGGAATATTAAAAAAAAATG ATATTAGGGTTATTAAATTCGTGAATTAGAGCACAAATTTTGTTTGTCAGATTGAATTTTATACCTCCAATAATTTTCAG ATCAGAAAGTATTTTTTTATTTTAAATTAAATAGAAATGCACATAATGATTTCTGAGCATGAAACTTGACGTGACATGAA ACTATTAGATGTGATAATTCTACAACTTTTAACCTCTTGCTGATTACTAATTATATTTACTCTTTTTATCCTCATCTTGG TTACATTTTTTTCTTCATGATTCATCTAACTTTTTCTACCCTTGAAAACAGTGGGATATCCTTTCCAATGGTGGAGTAGT TCAAGAAATGGCACACATTGCTAACGGACGAGATACTGGAAATTGTGTCTCTCTACTTCGAGTGAATGTAAGTTAATTAA TATTGACCTTACCTCACATTCACATTACCATTTTATTAACAAACCTACAACCATTCATCATTTTCCAGTCAAACTAAATA AATTCTGACTCAATTCGTGTCCCACTAATTATGCAGAGTGCTAATTCTAGCCAAAGTAACATGTTAATACTGCAAGAGAG TTGCACGGACTCTACGGGCTCATTCGTGATCTATGCTCCTGTGGACATTGTTGCTATGAATGTGGTTCTAAATGGAGGGG ACCCGGACTATGTAGCCCTTCTACCTTCAGGGTTTGCTGTGCTCCCAGATGGGACCACAGCACATGGAGGTGGCATTGGC GAAACTGGCCATGGTGGTTCGCTTTTAACTGTTGCGTTTCAGATTTTGGTGGATTCAGTTCCGACGGCAAAGCTTTCTCT TGGATCTGTTGCGACGGTTAATAATCTCATTGCTTGCACTGTTGAGAGGATTAAGGCTGCCTTGTCTGGTGAAGTTGCAT GA
CDS sequence (LotjaGi3g1v0190300.9) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCCGCTGGTATTATGATACCTGCGATGAACATGCCCTCAATGCTTGGAAGAAACGGTGACGTTGGTGGCAGTTTTGG ATTTTCTTCAAGTCTCTCTCTTTCCCAGCCGCACCTAATGGAAGCTCATCATCAGCTCCACCACCACCTTGACATGGCTC CTCAGAACACCACCTCCGAGAGCGACATCGCCGCCGCGGTGAGAATCCGTGGAGAAGACGAGTTCGACAGTGCCACCAAG TCCGGCAGCGAAAACCAAGAAGGTGGCGCCTCTGGAGGAGACCAGGACCCTCGTCCTAACAAGAAAAAGCGCTACCACCG CCACACTCAGCACCAGATCCAGGAAATGGAATCTTTTTTCAAGGAGTGCCCACACCCTGATGACAAGCAGAGGAAGGAGT TGAGCAGGGAGTTAGGGTTAGAGCCATTGCAGGTCAAGTTTTGGTTCCAGAACAAGCGCACTCAGATGAAGACACAGCAT GAGAGGCAAGAGAACACGCAGCTTAGGACTGACAATGACAAGCTTCGTGCGGATAACATGAGGTTGAGGGAAGCTCTTAG CAATTCTTCGTGTCCTAATTGTGGTGGACCAACCGCTATTGGAGAAATGTCATTTGATGAACATCACTTGAGGCTTGAAA ATGCCAGGCTAAGAGAAGAGATTGATAGGATTTCAGCCATTGCTGCAAAGTATGTGGGGAAGCCGGTGGTGAGCTACCCA CTCCTTTCTCCGCCATCTGCTCCTTCGTGTCCTCTAGAACTCGGAATAGGCGGCTTTGGAGGCCAACCAGGCGTTGGTGG TGACATGTATGGAGCCGGAGAGCTTCTCAGGTCAATCAGTGGACCTACTGAAGCTGACAAACCAATTATAATAGAGCTCG CTGTCGCAGCCATGGAGGAGCTCATTGGAATGGCACAAATGGGTGAGCCTCTTTGGCTGACCAAGCTGGATGGCACCACA ACCGTGCTCAATGAGGATGAATACATCAGGTCCTTTCCCCGAGGAATTGGTCCTAAGCCAGATGGGTTCAAGTGTGAGGC TTCACGAGAAACTTCTGTTGTCATCATGAACCATGTTAACCTGGTTGAGATTCTGATGGATGTGAACCAATGGTCCACAG TGTTCTCTGGTATCGTCTCAAGGGCAATGACTCTAGAAGTGCTATCAACTGGGGTAGCGGGAAACTACAATGGTGCCTTG CAAGTGATGACAGCTGAACTGCAAGTGCCTTCACCTCTTGTGCCAACTAGGGAGAGTTATTTTGTGAGGTATTGTAAGCA GCATGCTGATGGGACTTGGGCAGTGGTGGATGTGTCCTTGGATAATTTGCGCCCTAGTCCTTCTGCTAGATGTAGAAGAA GGCCTTCTGGTTGCTTAATCCAAGAAATGCCCAATGGCTACTCAAAGGTCACCTGGGTTGAGCATGTAGAAGTGGATGAA AGAGGTGTTCACAATCTATACAAGCAGCTTGTTAGCTCTGGACATGCATTTGGTGCAAAACGTTGGATTTCAACCTTAGA TCGACAATGTGAAAGGCTTGCTAGTGCCATGGCAACTAACATTCCCACAGTTGATGTTGGCGTGATAACAAACCAAGATG GGAGAAAGAGCATGTTGAAACTGGCTGAGAGGATGGTTATAAGCTTTTGTGCTGGAGTCAGTGCTTCCACTGCTCACACA TGGACAACAATCTCCGGGACTGGAGCTGAAACTGATGATGTTCGGGTCATGACCCGAAAGAGTGTGGATGACCCAGGTAG GCCTCCGGGTATCGTCCTTAGTGCTGCAACTTCTTTTTGGCTTCCAGTGCCACCTAAGAGGGTCTTTGAATTTCTCCGCG ATGAGAACTCTAGAAGTGAGTGGGATATCCTTTCCAATGGTGGAGTAGTTCAAGAAATGGCACACATTGCTAACGGACGA GATACTGGAAATTGTGTCTCTCTACTTCGAGTGAATAGTGCTAATTCTAGCCAAAGTAACATGTTAATACTGCAAGAGAG TTGCACGGACTCTACGGGCTCATTCGTGATCTATGCTCCTGTGGACATTGTTGCTATGAATGTGGTTCTAAATGGAGGGG ACCCGGACTATGTAGCCCTTCTACCTTCAGGGTTTGCTGTGCTCCCAGATGGGACCACAGCACATGGAGGTGGCATTGGC GAAACTGGCCATGGTGGTTCGCTTTTAACTGTTGCGTTTCAGATTTTGGTGGATTCAGTTCCGACGGCAAAGCTTTCTCT TGGATCTGTTGCGACGGTTAATAATCTCATTGCTTGCACTGTTGAGAGGATTAAGGCTGCCTTGTCTGGTGAAGTTGCAT GA
Protein sequence (LotjaGi3g1v0190300.9) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPAGIMIPAMNMPSMLGRNGDVGGSFGFSSSLSLSQPHLMEAHHQLHHHLDMAPQNTTSESDIAAAVRIRGEDEFDSATK SGSENQEGGASGGDQDPRPNKKKRYHRHTQHQIQEMESFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH ERQENTQLRTDNDKLRADNMRLREALSNSSCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVSYP LLSPPSAPSCPLELGIGGFGGQPGVGGDMYGAGELLRSISGPTEADKPIIIELAVAAMEELIGMAQMGEPLWLTKLDGTT TVLNEDEYIRSFPRGIGPKPDGFKCEASRETSVVIMNHVNLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGAL QVMTAELQVPSPLVPTRESYFVRYCKQHADGTWAVVDVSLDNLRPSPSARCRRRPSGCLIQEMPNGYSKVTWVEHVEVDE RGVHNLYKQLVSSGHAFGAKRWISTLDRQCERLASAMATNIPTVDVGVITNQDGRKSMLKLAERMVISFCAGVSASTAHT WTTISGTGAETDDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFEFLRDENSRSEWDILSNGGVVQEMAHIANGR DTGNCVSLLRVNSANSSQSNMLILQESCTDSTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAVLPDGTTAHGGGIG ETGHGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKAALSGEVA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 66 | 771 | 706 | 0.0 | ||
PANTHER | 66 | 771 | 706 | 0.0 | – | |
MobiDBLite | 73 | 111 | 39 | - | – | |
Gene3D | 74 | 158 | 85 | 1.2E-19 | – | |
SUPERFAMILY | 91 | 159 | 69 | 1.42E-19 | ||
ProSiteProfiles | 99 | 159 | 61 | 16.957 | ||
SMART | 100 | 163 | 64 | 4.8E-19 | ||
CDD | 102 | 160 | 59 | 6.64004E-20 | ||
Pfam | 102 | 157 | 56 | 8.9E-18 | ||
ProSitePatterns | 134 | 157 | 24 | - | ||
Coils | 165 | 185 | 21 | - | – | |
ProSiteProfiles | 283 | 515 | 233 | 44.132 | ||
SUPERFAMILY | 283 | 514 | 232 | 4.51E-35 | – | |
CDD | 287 | 511 | 225 | 7.64761E-132 | – | |
SMART | 292 | 512 | 221 | 3.2E-61 | ||
Pfam | 293 | 512 | 220 | 9.2E-58 | ||
Gene3D | 381 | 500 | 120 | 2.3E-5 | ||
SUPERFAMILY | 532 | 765 | 234 | 1.7E-24 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
Molecular function | Lipid binding | Interacting selectively and non-covalently with a lipid. | ||
Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi3g1v0190300.9, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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