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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0201200 |
| Transcript ID | LotjaGi3g1v0201200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phosphatidylinositol transfer protein; TAIR: AT3G51670.1 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein; Swiss-Prot: sp|Q9SCU1|PATL6_ARATH Patellin-6; TrEMBL-Plants: tr|A0A151RRX9|A0A151RRX9_CAJCA Patellin-6; Found in the gene: LotjaGi3g1v0201200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:29337776..29341155) extracted from Lotus japonicus Gifu genome v1.2.
TAGTGGACAGTTGCAGCACCTGCATCTTGTTTGAACTTTGAACTCTGAACTTTTGCAGCAGCAATGCACTTGAGTAATTC ACACGCACCCCTCTGTCAAAATTAAAAAATAAATCAAAAAACAGCGCGTGCTCTTACTCTCTCTCCCACATTCAAATTTC CTTCTTCTTCTTCTTCTTCTTCTTTCATTCTCCCTTCTCACTCACTCTCACTCTTCCCCTTCCCTTTCACACACAACAAA ACACAAAGCAAACCGCCACAAACCCAAAATCTCGCCACAAAATCCAAATCTCGCCACAAAACTCTCTTCTCCCTGTCTCT TTCTTCCCTCTGTTTTCTCTGTCATTTAGAGAGGAAGCTGTGTTTTTGCAGAGAATCACCTACCCATCTTCATCTCAACA CTCAATCCACCCTGCATTTTCCATTTCATGCAGAGATTCCATCTGGGTCTCTCTCAAAACACCCCCTTCATGATGGATTC TTCCTTATCATCATCATCATCCCCTATCTCCCTCAAAAACCAAAACACACCCTTTCAAGACCCTCCACAAGCTTCCCCAA AACCCTCCAAGAAAAGCTTGGTAGCTTCTCTAATGGGCGCTGCCACCACCCTCCGCACCCCTTCCTTCAAAGAAGACAAC TACTTCATCTCCCTTCTCAAATCCTCTGAGAAGAAAGCCCTTCAGGAGCTCAAGGAAAAGCTCCTTGCTTCTTCTGATTC TTCTTCTGATTCTGGTTCTTCCATGTGGGGTGTTCCTCTCCTTGGTGGTGATGACAGAGCTGATGTGATACTCTTGAAGT TTCTCAGAGCGAGGGACTTCAGGGTTGGTGAAGCTCTCAACATGCTTCTCAAGTGCTTGGCTTGGAGGAAAGAGTTTGCT GCTGAAACTGTTGCAGAAGAGGATTTGGGGTTCAAGGAGCTTGAAGGGGTGATTGCTTATATGCAAGGCTATGACAGAGA GGGACACCCTGTTTGCTACAATGCCTATGGGGTGTTCAGGGACAAGGACATGTATGAGAGGATTTTTGGAGATGAAGAGA AGCTGAAGAAGTTTCTAAGGTGGAGGGTTCAGGTCCTTGAAAGAGGGATCAAGCTTCTTCATTTTAAGCCTGGTGGGGTC AATTCTCTCATTCAGGTCACTGACCTTAAGGACATGCCCAAGAGAGAGCTCAGGGTGGCTTCTAATCAGATCCTTTCTCT GTTTCAAGACAATTACCCTGAAATGGTGGCTCGCAAGGTTTGATTATTTGATTTTTTTCATGTTTCTCTAATTTGGTTGT GTTCTTCAAAATTAGAAACAAGGTGAGTTGGTAATTACTAATTTCTCATTTGCTTGATTTCGGTTTTGGGGGTTCAGATT TTCATCAATGTGCCCTGGTACTTTAGCATGTTGTATTCAATGTTCAGTCCATTTTTGACTCAAAGGACTAAGAGCAAGTT TGTAATCTCTAAGGAAGGAAATGCTGCAGAGACACTCTACAAGTGAGTCTATTGTGTCCATTTTCTTACCTATTGCAACC AACAAATCCACATTTGTAGAATGTTTTGGTTGGCCACTTGGCCTATTCTTCTCAATTTTTATTTATGTAAAGATTTCTCC ATTTGTCTGAGATTTTAATCACTCATTTTAACATTGAAAGCTGTCTTTACTTGGCTTTCATTTTGTAGTTAGCAAATATA GTTGTTCCATGTTTCCTTCTATTTCTGCTTTGGGTTTGTTTTCTGAAATTAGTTCTTTTCTTATTCTCAGATTTATAAGG CCTGAAGACATTCCTGTTCAGTATGGAGGACTGAATCGTCCCAGCGATTTGCAGAATGGTCCCCCAAAACCTGCTTCTGA GTTCACTGTCAAAGGAGGGGAGAAAGTAAACATACAAATAGAAGGAATTGAGGTGTGATCATCATTCACCCCATTCCATT TACTCTTCCCTATGCACACTTTGATTCAATGATTCCTCCTTTTAAGATAAAATATTATGTTTTTTGGAATCTACTTATTT CAAATTCAAAACACTACAAGGTTAATGTTTTTTTATACACTGTTGGTGATTACTTTACTAATTGTTGTGTGAACTAGGCT GATGCAACTATCACGTGGGACATTGTGGTTGGAGGTTGGGACTTGGAATATAGTGCTGAGTTTGTCCCAAATGCTGAAGG AAGCTACACCATTGCAGTTGAGAAGCCAAGGAAGATTGGAGCCTCAGAAGAAGCAATTCACAACTCATTCACTTCTAAAG AATCTGGGAAAATGGTACTCTCTGTTGATAACTCTGCCTCCAGGAAGAAAAAGGTTGCTGCTTATCGCTATGTCGTCCGC AAATGTAGCACCAGTTGAGATGGCCATTAATAGCATGTTTGGATTCATGTTTAAATCTTCCAAAATCGATCATACTCTCT CAAAAGCTATTAGGAGTTTCTTCTCCCATAAACATGAAAATCATCTACCGTGCATCCAATCATGCATTAAGTTTCAAATA GCTTTTTGGAGCTTTTTATTTAACTTTTTGCTCTTGATGTTTCTTTTGTCTAATATTTTGGAGGATTCTTATTTATGCTT CTGAACTTGTCGAAGCCTGTTTAATAGGGGTATTAATCAACTACTAGTAGTGTAGTGTACTAGTGTATTGTATAAAAGAG AACAAATGGTGGTAGTGTTATATTTCTTGGTATAGGAGAAAGGCAATTAAGTTTGCTTGTGTTGCATACCATGTTTCTAT TTGTGAGCTAGTGACAATTGCATTGTCATTTGAGACACGTGGAATTTACAAGTTGGGATTGGTTATGGTGTCAATTCAGA GAAAGACAGAGATTGTTTATTTGGCTTGTTGTGTATGTTGCAATCTACACAGGGATCGCTTTGTGAAGGCGCAATCTATG GTTTGTGATTTGGAGTTCTGTTTTTGTATTGGGTTTGATTGGTTGAAGGAAAGTGCTTGGGATGTGTTAGTCGAAATGAA AAGAAAAGTTACCACCAAATACGTATATCAATTGACACCAACGTGTTCTAGCTAAGTAGATGTATGCCTTGTGTTCGAGG CTAATATTTGATAGGAAGAACTTTAACATCAATAATAGTTTTACCGGTTCAAACAAGATTTTGCTTTGAGAGATAATCAA ACAAAAAGAAATGAAAAAGAAAACTTAAGTGGGGATAGATGTTTGACTAGACTATGCATTTTTGAAGGTGAGGTTTGTGT TGCTTTGTATAGAACTAGATAGTAACCCGTGCGATGCACGGTTGCTAGTTTTAATTACAATCAATAATTTGTTATGAATA TAAATTAAATACTATTTAATGGTTATATTAATCTATTTTGAACTCTAGGATATAAAAACATATTTTCCCCAACAATATCT ATTTCAAATTTAATTTTCAC
CDS sequence (LotjaGi3g1v0201200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGAGATTCCATCTGGGTCTCTCTCAAAACACCCCCTTCATGATGGATTCTTCCTTATCATCATCATCATCCCCTAT CTCCCTCAAAAACCAAAACACACCCTTTCAAGACCCTCCACAAGCTTCCCCAAAACCCTCCAAGAAAAGCTTGGTAGCTT CTCTAATGGGCGCTGCCACCACCCTCCGCACCCCTTCCTTCAAAGAAGACAACTACTTCATCTCCCTTCTCAAATCCTCT GAGAAGAAAGCCCTTCAGGAGCTCAAGGAAAAGCTCCTTGCTTCTTCTGATTCTTCTTCTGATTCTGGTTCTTCCATGTG GGGTGTTCCTCTCCTTGGTGGTGATGACAGAGCTGATGTGATACTCTTGAAGTTTCTCAGAGCGAGGGACTTCAGGGTTG GTGAAGCTCTCAACATGCTTCTCAAGTGCTTGGCTTGGAGGAAAGAGTTTGCTGCTGAAACTGTTGCAGAAGAGGATTTG GGGTTCAAGGAGCTTGAAGGGGTGATTGCTTATATGCAAGGCTATGACAGAGAGGGACACCCTGTTTGCTACAATGCCTA TGGGGTGTTCAGGGACAAGGACATGTATGAGAGGATTTTTGGAGATGAAGAGAAGCTGAAGAAGTTTCTAAGGTGGAGGG TTCAGGTCCTTGAAAGAGGGATCAAGCTTCTTCATTTTAAGCCTGGTGGGGTCAATTCTCTCATTCAGGTCACTGACCTT AAGGACATGCCCAAGAGAGAGCTCAGGGTGGCTTCTAATCAGATCCTTTCTCTGTTTCAAGACAATTACCCTGAAATGGT GGCTCGCAAGATTTTCATCAATGTGCCCTGGTACTTTAGCATGTTGTATTCAATGTTCAGTCCATTTTTGACTCAAAGGA CTAAGAGCAAGTTTGTAATCTCTAAGGAAGGAAATGCTGCAGAGACACTCTACAAATTTATAAGGCCTGAAGACATTCCT GTTCAGTATGGAGGACTGAATCGTCCCAGCGATTTGCAGAATGGTCCCCCAAAACCTGCTTCTGAGTTCACTGTCAAAGG AGGGGAGAAAGTAAACATACAAATAGAAGGAATTGAGGCTGATGCAACTATCACGTGGGACATTGTGGTTGGAGGTTGGG ACTTGGAATATAGTGCTGAGTTTGTCCCAAATGCTGAAGGAAGCTACACCATTGCAGTTGAGAAGCCAAGGAAGATTGGA GCCTCAGAAGAAGCAATTCACAACTCATTCACTTCTAAAGAATCTGGGAAAATGGTACTCTCTGTTGATAACTCTGCCTC CAGGAAGAAAAAGGTTGCTGCTTATCGCTATGTCGTCCGCAAATGTAGCACCAGTTGA
Protein sequence (LotjaGi3g1v0201200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQRFHLGLSQNTPFMMDSSLSSSSSPISLKNQNTPFQDPPQASPKPSKKSLVASLMGAATTLRTPSFKEDNYFISLLKSS EKKALQELKEKLLASSDSSSDSGSSMWGVPLLGGDDRADVILLKFLRARDFRVGEALNMLLKCLAWRKEFAAETVAEEDL GFKELEGVIAYMQGYDREGHPVCYNAYGVFRDKDMYERIFGDEEKLKKFLRWRVQVLERGIKLLHFKPGGVNSLIQVTDL KDMPKRELRVASNQILSLFQDNYPEMVARKIFINVPWYFSMLYSMFSPFLTQRTKSKFVISKEGNAAETLYKFIRPEDIP VQYGGLNRPSDLQNGPPKPASEFTVKGGEKVNIQIEGIEADATITWDIVVGGWDLEYSAEFVPNAEGSYTIAVEKPRKIG ASEEAIHNSFTSKESGKMVLSVDNSASRKKKVAAYRYVVRKCSTS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 15 | 49 | 35 | - | – | |
| MobiDBLite | 15 | 48 | 34 | - | – | |
| PANTHER | 40 | 443 | 404 | 1.8E-235 | – | |
| PANTHER | 40 | 443 | 404 | 1.8E-235 | – | |
| Gene3D | 73 | 356 | 284 | 6.3E-59 | ||
| SUPERFAMILY | 77 | 158 | 82 | 4.45E-13 | ||
| Pfam | 84 | 141 | 58 | 1.7E-9 | ||
| SMART | 118 | 143 | 26 | 4.4E-5 | ||
| ProSiteProfiles | 157 | 331 | 175 | 18.196 | ||
| CDD | 162 | 326 | 165 | 7.78105E-36 | ||
| SUPERFAMILY | 163 | 328 | 166 | 8.11E-42 | ||
| Pfam | 164 | 325 | 162 | 3.6E-32 | ||
| SMART | 164 | 328 | 165 | 1.8E-46 | ||
| ProSiteProfiles | 307 | 441 | 135 | 11.352 | ||
| SUPERFAMILY | 342 | 439 | 98 | 1.02E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0201200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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