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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0201200 |
| Transcript ID | LotjaGi3g1v0201200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phosphatidylinositol transfer protein; TAIR: AT3G51670.1 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein; Swiss-Prot: sp|Q9SCU1|PATL6_ARATH Patellin-6; TrEMBL-Plants: tr|A0A151RRX9|A0A151RRX9_CAJCA Patellin-6; Found in the gene: LotjaGi3g1v0201200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:29338252..29340359) extracted from Lotus japonicus Gifu genome v1.2.
ATTCTTCCTTATCATCATCATCATCCCCTATCTCCCTCAAAAACCAAAACACACCCTTTCAAGACCCTCCACAAGCTTCC CCAAAACCCTCCAAGAAAAGCTTGGTAGCTTCTCTAATGGGCGCTGCCACCACCCTCCGCACCCCTTCCTTCAAAGAAGA CAACTACTTCATCTCCCTTCTCAAATCCTCTGAGAAGAAAGCCCTTCAGGAGCTCAAGGAAAAGCTCCTTGCTTCTTCTG ATTCTTCTTCTGATTCTGGTTCTTCCATGTGGGGTGTTCCTCTCCTTGGTGGTGATGACAGAGCTGATGTGATACTCTTG AAGTTTCTCAGAGCGAGGGACTTCAGGGTTGGTGAAGCTCTCAACATGCTTCTCAAGTGCTTGGCTTGGAGGAAAGAGTT TGCTGCTGAAACTGTTGCAGAAGAGGATTTGGGGTTCAAGGAGCTTGAAGGGGTGATTGCTTATATGCAAGGCTATGACA GAGAGGGACACCCTGTTTGCTACAATGCCTATGGGGTGTTCAGGGACAAGGACATGTATGAGAGGATTTTTGGAGATGAA GAGAAGCTGAAGAAGTTTCTAAGGTGGAGGGTTCAGGTCCTTGAAAGAGGGATCAAGCTTCTTCATTTTAAGCCTGGTGG GGTCAATTCTCTCATTCAGGTCACTGACCTTAAGGACATGCCCAAGAGAGAGCTCAGGGTGGCTTCTAATCAGATCCTTT CTCTGTTTCAAGACAATTACCCTGAAATGGTGGCTCGCAAGGTTTGATTATTTGATTTTTTTCATGTTTCTCTAATTTGG TTGTGTTCTTCAAAATTAGAAACAAGGTGAGTTGGTAATTACTAATTTCTCATTTGCTTGATTTCGGTTTTGGGGGTTCA GATTTTCATCAATGTGCCCTGGTACTTTAGCATGTTGTATTCAATGTTCAGTCCATTTTTGACTCAAAGGACTAAGAGCA AGTTTGTAATCTCTAAGGAAGGAAATGCTGCAGAGACACTCTACAAGTGAGTCTATTGTGTCCATTTTCTTACCTATTGC AACCAACAAATCCACATTTGTAGAATGTTTTGGTTGGCCACTTGGCCTATTCTTCTCAATTTTTATTTATGTAAAGATTT CTCCATTTGTCTGAGATTTTAATCACTCATTTTAACATTGAAAGCTGTCTTTACTTGGCTTTCATTTTGTAGTTAGCAAA TATAGTTGTTCCATGTTTCCTTCTATTTCTGCTTTGGGTTTGTTTTCTGAAATTAGTTCTTTTCTTATTCTCAGATTTAT AAGGCCTGAAGACATTCCTGTTCAGTATGGAGGACTGAATCGTCCCAGCGATTTGCAGAATGGTCCCCCAAAACCTGCTT CTGAGTTCACTGTCAAAGGAGGGGAGAAAGTAAACATACAAATAGAAGGAATTGAGGTGTGATCATCATTCACCCCATTC CATTTACTCTTCCCTATGCACACTTTGATTCAATGATTCCTCCTTTTAAGATAAAATATTATGTTTTTTGGAATCTACTT ATTTCAAATTCAAAACACTACAAGGTTAATGTTTTTTTATACACTGTTGGTGATTACTTTACTAATTGTTGTGTGAACTA GGCTGATGCAACTATCACGTGGGACATTGTGGTTGGAGGTTGGGACTTGGAATATAGTGCTGAGTTTGTCCCAAATGCTG AAGGAAGCTACACCATTGCAGTTGAGAAGCCAAGGAAGATTGGAGCCTCAGAAGAAGCAATTCACAACTCATTCACTTCT AAAGAATCTGGGAAAATGGTACTCTCTGTTGATAACTCTGCCTCCAGGAAGAAAAAGGTTGCTGCTTATCGCTATGTCGT CCGCAAATGTAGCACCAGTTGAGATGGCCATTAATAGCATGTTTGGATTCATGTTTAAATCTTCCAAAATCGATCATACT CTCTCAAAAGCTATTAGGAGTTTCTTCTCCCATAAACATGAAAATCATCTACCGTGCATCCAATCATGCATTAAGTTTCA AATAGCTTTTTGGAGCTTTTTATTTAACTTTTTGCTCTTGATGTTTCTTTTGTCTAATATTTTGGAGGATTCTTATTTAT GCTTCTGAACTTGTCGAAGCCTGTTTAA
CDS sequence (LotjaGi3g1v0201200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCGCTGCCACCACCCTCCGCACCCCTTCCTTCAAAGAAGACAACTACTTCATCTCCCTTCTCAAATCCTCTGAGAA GAAAGCCCTTCAGGAGCTCAAGGAAAAGCTCCTTGCTTCTTCTGATTCTTCTTCTGATTCTGGTTCTTCCATGTGGGGTG TTCCTCTCCTTGGTGGTGATGACAGAGCTGATGTGATACTCTTGAAGTTTCTCAGAGCGAGGGACTTCAGGGTTGGTGAA GCTCTCAACATGCTTCTCAAGTGCTTGGCTTGGAGGAAAGAGTTTGCTGCTGAAACTGTTGCAGAAGAGGATTTGGGGTT CAAGGAGCTTGAAGGGGTGATTGCTTATATGCAAGGCTATGACAGAGAGGGACACCCTGTTTGCTACAATGCCTATGGGG TGTTCAGGGACAAGGACATGTATGAGAGGATTTTTGGAGATGAAGAGAAGCTGAAGAAGTTTCTAAGGTGGAGGGTTCAG GTCCTTGAAAGAGGGATCAAGCTTCTTCATTTTAAGCCTGGTGGGGTCAATTCTCTCATTCAGGTCACTGACCTTAAGGA CATGCCCAAGAGAGAGCTCAGGGTGGCTTCTAATCAGATCCTTTCTCTGTTTCAAGACAATTACCCTGAAATGGTGGCTC GCAAGATTTTCATCAATGTGCCCTGGTACTTTAGCATGTTGTATTCAATGTTCAGTCCATTTTTGACTCAAAGGACTAAG AGCAAGTTTGTAATCTCTAAGGAAGGAAATGCTGCAGAGACACTCTACAAATTTATAAGGCCTGAAGACATTCCTGTTCA GTATGGAGGACTGAATCGTCCCAGCGATTTGCAGAATGGTCCCCCAAAACCTGCTTCTGAGTTCACTGTCAAAGGAGGGG AGAAAGTAAACATACAAATAGAAGGAATTGAGGCTGATGCAACTATCACGTGGGACATTGTGGTTGGAGGTTGGGACTTG GAATATAGTGCTGAGTTTGTCCCAAATGCTGAAGGAAGCTACACCATTGCAGTTGAGAAGCCAAGGAAGATTGGAGCCTC AGAAGAAGCAATTCACAACTCATTCACTTCTAAAGAATCTGGGAAAATGGTACTCTCTGTTGATAACTCTGCCTCCAGGA AGAAAAAGGTTGCTGCTTATCGCTATGTCGTCCGCAAATGA
Protein sequence (LotjaGi3g1v0201200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGAATTLRTPSFKEDNYFISLLKSSEKKALQELKEKLLASSDSSSDSGSSMWGVPLLGGDDRADVILLKFLRARDFRVGE ALNMLLKCLAWRKEFAAETVAEEDLGFKELEGVIAYMQGYDREGHPVCYNAYGVFRDKDMYERIFGDEEKLKKFLRWRVQ VLERGIKLLHFKPGGVNSLIQVTDLKDMPKRELRVASNQILSLFQDNYPEMVARKIFINVPWYFSMLYSMFSPFLTQRTK SKFVISKEGNAAETLYKFIRPEDIPVQYGGLNRPSDLQNGPPKPASEFTVKGGEKVNIQIEGIEADATITWDIVVGGWDL EYSAEFVPNAEGSYTIAVEKPRKIGASEEAIHNSFTSKESGKMVLSVDNSASRKKKVAAYRYVVRK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 386 | 383 | 6.7E-229 | – | |
| PANTHER | 4 | 386 | 383 | 6.7E-229 | – | |
| Gene3D | 18 | 301 | 284 | 4.1E-59 | ||
| SUPERFAMILY | 22 | 103 | 82 | 3.79E-13 | ||
| Pfam | 29 | 86 | 58 | 1.4E-9 | ||
| SMART | 63 | 88 | 26 | 4.4E-5 | ||
| ProSiteProfiles | 102 | 276 | 175 | 18.196 | ||
| CDD | 107 | 271 | 165 | 7.03476E-36 | ||
| SUPERFAMILY | 108 | 273 | 166 | 5.76E-42 | ||
| Pfam | 109 | 270 | 162 | 2.7E-32 | ||
| SMART | 109 | 273 | 165 | 1.8E-46 | ||
| ProSiteProfiles | 252 | 386 | 135 | 11.352 | ||
| SUPERFAMILY | 287 | 384 | 98 | 1.03E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0201200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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