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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0208000 |
| Transcript ID | LotjaGi3g1v0208000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectinesterase; TAIR: AT2G45220.1 Plant invertase/pectin methylesterase inhibitor superfamily; Swiss-Prot: sp|O04887|PME2_CITSI Pectinesterase 2; TrEMBL-Plants: tr|A0A072UI35|A0A072UI35_MEDTR Pectinesterase; Found in the gene: LotjaGi3g1v0208000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:30655080..30657475) extracted from Lotus japonicus Gifu genome v1.2.
ACAAACCCACTTGAATACAATCAAACCAAGCCCTTCTCTCTTACACATCAACTTCATCGATCATTCACTTACAATATCCA ATATTGTCCAAGTTATTGTTAAGGCCATAACAATGATAACTTTTCGCTTCCTCATAACACTTTCACTTCCCTTCCTATTT TTCTCTTTCATAGTTTCAGGTTATTCCTGGAACAAAGTTCAGAATTGGTGCAATCAAACTCCAAATCCTGAACCTTGTAA CTATTTATTGACCAACAATCCTAGTTACCAACACAACCTTATCAAGAACAAAGCTGATTTCTACAAGCTCTCATTGCAAC TCGCTCAAGAGCGAGCACTCAAAGGACATGCAAACACTCTCTCACTTGGTCCAAAATGCAACAACAACCCACGCGTCAAA TCCGCGTGGGCTGATTGTGTTGAGCTGTACGAGCAAACCATCATTCAGCTCAACAAAACCTTAGACCCTAACACCAAATG CTCCCAAGTTGACACCCAAACATGGCTCAGCACAGCTCTCACTAACCTTGAGACATGCAAAGCCGGGTTCTACGAGCTTG GAGTTGAAAACTATGTTCTTCCTCTCATGTCCAATAATGTTACTAAGTTGCTAAGCAACACTTTGGCTCTCAACAAGGTT CCTTACCAACAACAACCTAGTTATAACCAAGATGGGTCGTTTCCAACATGGGTGAAGCCTGGTGATAGGAAGCTGCTGCA AACATCGTCGGCACCTGCTTCGAAGGCGAACGTGGTGGTGGCGAAAGATGGGTCTGGAAAGTACACAAGTTTAAGTGCTG CCATCAATGCTGCACCAAAGAAGGGAAGTGGGAGGTATGTGATATATGTGAAGGCTGGTGTTTACAATGAACAAGTTGAG ATAAAGGCAAAGAATATCATGTTGGTGGGAGATGGTATTGGCAAAACTATAATCACCGGTAGCAAAAGTGTTGGAGGAGG CACCACAACCTTTCGTTCAGCTACTGTTGGTAAGTCCAAATCTTGCTTCATTTGATCTCCCTTTTTGATTTAGCTGGGAA TATTCTCTCTAATTTAGAGGGTTGTGATGCTCTCCCATTGGAAATGAAATCTTTGTCACAAAAATCCAATTCTCTGTGGC ACAAATCAATTTTTCACGTACATGACAAGATTTCTTTTGGGAGATGAGAATTGAGAAACCATTTTAAGACAAAACATCGG CATCCATCCTCGTTGATAATTACTAAAATGCTAATTTCAAAAGTCATTATTATATTTATGATAATATGTCATTTAATTGT TAACTAAGAATCACTAATTGATCAATCATGTGATGCATGAATTGTTCTTTTTAATTTTTGGACTAAACTTTTCTTGGTCA ATCAAACAAAATACCAAAGTTTTATGGTTCCCTCCTCCTCCTTAACATTTTATCACAATGAATGATTAATTCGAACAGTG AGGTCTAACTAGCAATGAATTTTTGCAGCTGCTGTTGGGGATGGATTCATAGCTCAAGACATCACATTTAGAAACACTGC TGGAGCAAAAAACCACCAAGCTGTTGCACTTCGTTCTGGATCAGACTTATCAGTGTTTTACAGATGCAGCTTTGAAGGCT ACCAAGACACACTCTATGTCCATTCCGACAGACAATTCTACAGAGAATGCAACATCTACGGCACAGTTGACTTCATATTC GGTAACGCGGCTGCCGTATTCCAAAATTGTAACATCTTTGCGAGAAACCCTCCCAACAAAGTGAACACAATCACAGCACA AGGAAGAACAGATGCGAACCAAAACACAGGCATTTCCATTCACAATTCAAGGGTTTTGGCCGCCTCGGATTTGAAACCGG TCCAGAGCTCGGTTAAGACTTATCTTGGTAGACCATGGAAGCAATATTCGAGAACAGTTTTCATGAAGACAAGTCTTGAT AGTTTGATCCACCCCGCGGGTTGGTTGGAATGGAGCGGCGATTTTGCATTAAAGACTCTGTATTATGGAGAGTACATGAA CACAGGTTCTGGCTCTTCAACAAAGAGTAGAGTTAAATGGCAAGGTTATCATGTGATGACAAGTGCTTCTGAAGCTTCAA AGTTCACTGTGGGTAATTTCATTGCTGGAAACTCCTGGATACCTGCAACCAAAGTGCCTTTTACATCTTCTCTGTAGATG AGTGTTGTATAATTGTTCATTGATTGTTTGATTTGTTCCAATTATTTGTTTAGTTTTTGTTGTTAAAATTGATACTTGTA TGTAAAATTGATTAGTTGTTTTGTGATTTGATTTCATTGTTTGTTGGATTGTATTGGGAAGACAGATTGTGTTGAATGGA AATATAATTGTAAAGATGAAGGATTTTTATATTATTTTGATCACATACATTTATAAGAGCATTGATATTAAAGCTA
CDS sequence (LotjaGi3g1v0208000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATAACTTTTCGCTTCCTCATAACACTTTCACTTCCCTTCCTATTTTTCTCTTTCATAGTTTCAGGTTATTCCTGGAA CAAAGTTCAGAATTGGTGCAATCAAACTCCAAATCCTGAACCTTGTAACTATTTATTGACCAACAATCCTAGTTACCAAC ACAACCTTATCAAGAACAAAGCTGATTTCTACAAGCTCTCATTGCAACTCGCTCAAGAGCGAGCACTCAAAGGACATGCA AACACTCTCTCACTTGGTCCAAAATGCAACAACAACCCACGCGTCAAATCCGCGTGGGCTGATTGTGTTGAGCTGTACGA GCAAACCATCATTCAGCTCAACAAAACCTTAGACCCTAACACCAAATGCTCCCAAGTTGACACCCAAACATGGCTCAGCA CAGCTCTCACTAACCTTGAGACATGCAAAGCCGGGTTCTACGAGCTTGGAGTTGAAAACTATGTTCTTCCTCTCATGTCC AATAATGTTACTAAGTTGCTAAGCAACACTTTGGCTCTCAACAAGGTTCCTTACCAACAACAACCTAGTTATAACCAAGA TGGGTCGTTTCCAACATGGGTGAAGCCTGGTGATAGGAAGCTGCTGCAAACATCGTCGGCACCTGCTTCGAAGGCGAACG TGGTGGTGGCGAAAGATGGGTCTGGAAAGTACACAAGTTTAAGTGCTGCCATCAATGCTGCACCAAAGAAGGGAAGTGGG AGGTATGTGATATATGTGAAGGCTGGTGTTTACAATGAACAAGTTGAGATAAAGGCAAAGAATATCATGTTGGTGGGAGA TGGTATTGGCAAAACTATAATCACCGGTAGCAAAAGTGTTGGAGGAGGCACCACAACCTTTCGTTCAGCTACTGTTGCTG CTGTTGGGGATGGATTCATAGCTCAAGACATCACATTTAGAAACACTGCTGGAGCAAAAAACCACCAAGCTGTTGCACTT CGTTCTGGATCAGACTTATCAGTGTTTTACAGATGCAGCTTTGAAGGCTACCAAGACACACTCTATGTCCATTCCGACAG ACAATTCTACAGAGAATGCAACATCTACGGCACAGTTGACTTCATATTCGGTAACGCGGCTGCCGTATTCCAAAATTGTA ACATCTTTGCGAGAAACCCTCCCAACAAAGTGAACACAATCACAGCACAAGGAAGAACAGATGCGAACCAAAACACAGGC ATTTCCATTCACAATTCAAGGGTTTTGGCCGCCTCGGATTTGAAACCGGTCCAGAGCTCGGTTAAGACTTATCTTGGTAG ACCATGGAAGCAATATTCGAGAACAGTTTTCATGAAGACAAGTCTTGATAGTTTGATCCACCCCGCGGGTTGGTTGGAAT GGAGCGGCGATTTTGCATTAAAGACTCTGTATTATGGAGAGTACATGAACACAGGTTCTGGCTCTTCAACAAAGAGTAGA GTTAAATGGCAAGGTTATCATGTGATGACAAGTGCTTCTGAAGCTTCAAAGTTCACTGTGGGTAATTTCATTGCTGGAAA CTCCTGGATACCTGCAACCAAAGTGCCTTTTACATCTTCTCTGTAG
Protein sequence (LotjaGi3g1v0208000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MITFRFLITLSLPFLFFSFIVSGYSWNKVQNWCNQTPNPEPCNYLLTNNPSYQHNLIKNKADFYKLSLQLAQERALKGHA NTLSLGPKCNNNPRVKSAWADCVELYEQTIIQLNKTLDPNTKCSQVDTQTWLSTALTNLETCKAGFYELGVENYVLPLMS NNVTKLLSNTLALNKVPYQQQPSYNQDGSFPTWVKPGDRKLLQTSSAPASKANVVVAKDGSGKYTSLSAAINAAPKKGSG RYVIYVKAGVYNEQVEIKAKNIMLVGDGIGKTIITGSKSVGGGTTTFRSATVAAVGDGFIAQDITFRNTAGAKNHQAVAL RSGSDLSVFYRCSFEGYQDTLYVHSDRQFYRECNIYGTVDFIFGNAAAVFQNCNIFARNPPNKVNTITAQGRTDANQNTG ISIHNSRVLAASDLKPVQSSVKTYLGRPWKQYSRTVFMKTSLDSLIHPAGWLEWSGDFALKTLYYGEYMNTGSGSSTKSR VKWQGYHVMTSASEASKFTVGNFIAGNSWIPATKVPFTSSL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| SignalP_EUK | 1 | 23 | 23 | - | – | |
| PANTHER | 3 | 521 | 519 | 1.8E-267 | – | |
| PANTHER | 3 | 521 | 519 | 1.8E-267 | – | |
| TIGRFAM | 6 | 176 | 171 | 2.3E-28 | ||
| Phobius | 6 | 17 | 12 | - | – | |
| TMHMM | 7 | 26 | 20 | - | – | |
| Phobius | 18 | 23 | 6 | - | – | |
| Phobius | 24 | 521 | 498 | - | – | |
| SMART | 24 | 173 | 150 | 9.8E-30 | ||
| Gene3D | 25 | 177 | 153 | 1.6E-16 | ||
| SUPERFAMILY | 28 | 176 | 149 | 5.62E-31 | ||
| Pfam | 29 | 173 | 145 | 8.2E-24 | ||
| CDD | 32 | 175 | 144 | 4.02185E-31 | – | |
| SUPERFAMILY | 207 | 518 | 312 | 4.83E-118 | ||
| Gene3D | 207 | 521 | 315 | 2.1E-136 | ||
| Pfam | 213 | 507 | 295 | 4.6E-145 | ||
| ProSitePatterns | 238 | 257 | 20 | - | ||
| SMART | 246 | 424 | 179 | 0.0011 | ||
| ProSitePatterns | 355 | 364 | 10 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Enzyme inhibitor activity | Binds to and stops, prevents or reduces the activity of an enzyme. | ||
| Molecular function | Pectinesterase activity | Catalysis of the reaction: pectin + n H2O = n methanol + pectate. | ||
| Biological process | Cell wall modification | The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly. |
Expression pattern of LotjaGi3g1v0208000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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