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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0210100 |
| Transcript ID | LotjaGi3g1v0210100.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chlorophyll a-b binding protein, chloroplastic; TAIR: AT3G08940.2 light harvesting complex photosystem II; Swiss-Prot: sp|Q9XF88|CB4B_ARATH Chlorophyll a-b binding protein CP29.2, chloroplastic; TrEMBL-Plants: tr|Q9XQB2|Q9XQB2_VIGRR Chlorophyll a-b binding protein, chloroplastic; Found in the gene: LotjaGi3g1v0210100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:31275892..31277895) extracted from Lotus japonicus Gifu genome v1.2.
ATGGATACCCTCCCAAATCCAACGGCCACAAACCCCCAATCGCAGATTATCCATATTACACAATCACTTCCAACATCAAA TATATCTCCCACCACCACACCACTCTCTCAACACACTACAACTGATCACACTTCTACTCTCACCCCCGGCGCACATTAGC GACAAGCCATGGCAACCGCCACCGCAACCGCCGCCGCCACCTCATCCTTCATCGGAACACGCCTCCGCGACGCGCAGCCG AGCCTAGGCCGTGTGCAAGCGAGATTCGGATTCGGGATCGGGAAGAAGAAGGCCGCACCGAAGAAGGTAGCGAGACCAGG TCCAGGTACCGAACGGCCGCTGTGGTACCCCGGAGCGAAGGCGCCAGAGTGGCTCGACGGGAGCTTGGTCGGTGACTACG GGTTTGATCCGTTTGGGCTTGGGAAGCCGGCGGAGTACTTGCAGTTTGATCTGGATTCGTTGGACCAGAACCTGGCGAAG AATTTGGCCGGAGATGTGATCGGAACGAGGACGGAGTTTGAGGACGTGAAGTCGACGCCGTTTCAGCCGTACAGTGAGGT GTTTGGGTTGCAGAGGTTTAGGGAGTGCGAGCTTATTCATGGAAGGTGGGCCATGCTCGCCACGCTTGGTGCTCTTACCG TTGAGTGGCTCACCGGAATCACCTGGCAAGACGCCGGCAAGGTGCGCTTGGGTTAATATAATTGATATTTATTTTTGTTT ATATTATTACTATTTTTTCTCTAGATAATAATTAATTAATATTGAAATAATAAATTTTATTTTTGAAACTAATAATAATA ATTATTAATATTGATGAAGTTTTATCTCATATAAAAAAAATTGGGTGAAAATGTGGAAGTAAATGGCGTCGCCCGGACTT GAACCGGACTTGGTTGATTACAAGTTAATTCGATTATTTATTTTTGCGTTTTGTAAAAATTGCTTTTCATCGTTTTTATA TGGAAAAGCAGATTTTCATAATTTTAATTAGAATAATTTATATAGGTTACTTAAGTTTTCTTTTAATGTTTGTTTAGGAA AAAAAAAGAACGCCCGGAAGATTCTCATTGCTTCCATGTGTTACTATTTAATGCATGTTTGAATACACGGTGAAAATTAT GGTAAAATTAAAATTACTGTAGAAGGCCACAAAGTTAATGAAAGTTACTTTTTAGTCACGGTGATTTTGGGAATGGATTC TCATGTAAGACATGACCACATGAAATAGATCTCATCCATTGAAAGCATATAAAAAAATAAAAGAAATATTTTTGATGGCT TAGATCTCTCATGTGATCATCCCATGATTCACCATGTCATATTTTATGATTTTCTGAATTGTATTAGGTTGTTTTTTAAT TTTCATATTTTCATGAGAGAAAGGAAAAATAAAAAAGGTTGAAGATTGACTGTTGTTGCGTGTGATTTTAAAACTTAAAA AGTAGAAATGTCATCTATTTCTTAGATCTCTTCTATATATGATGTGTCTGGAATCATTAACAACTGCCTTGCTTTAGAAA ATGATACTTAATGATGGTTTGAATTCACATAGTAATATATCTGTATAAAAATTTAGTTGCAGTATGATGAGCTTGTTAAT TAATTAGTTAAATAATTATAGAGTTGTGGTTTGATTTTCAGGTGGAGCTTGTAGAAGGGTCATCATACCTTGGTCTACCA CTCCCATTCTCAATCACCGCATTGATTTGGATTGAAGTTTTGGTGATTGGGTACATTGAGTTCCAAAGAAACGCTGAGCT TGACCCTGAGAAGAGGCTGTACCCAGGTGGCAGCTTCTTCGACCCTCTCGGCTTGGCCGCGGACCCTGAGAAGAAGGCCA CCCTTCAATTGGCAGAAATCAAGCATGCTCGTCTTGCCATGGTTGCTTTCCTTGGCTTTGCTGTCCAAGCTGCTGCCACT GGCAAAGGCCCTCTTGATAACTGGGCTACCCATTTGAGTGACCCTCTTCACACCACCATCATTGATACCTTCTCATCCTC TTGA
CDS sequence (LotjaGi3g1v0210100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAACCGCCACCGCAACCGCCGCCGCCACCTCATCCTTCATCGGAACACGCCTCCGCGACGCGCAGCCGAGCCTAGG CCGTGTGCAAGCGAGATTCGGATTCGGGATCGGGAAGAAGAAGGCCGCACCGAAGAAGGTAGCGAGACCAGGTCCAGGTA CCGAACGGCCGCTGTGGTACCCCGGAGCGAAGGCGCCAGAGTGGCTCGACGGGAGCTTGGTCGGTGACTACGGGTTTGAT CCGTTTGGGCTTGGGAAGCCGGCGGAGTACTTGCAGTTTGATCTGGATTCGTTGGACCAGAACCTGGCGAAGAATTTGGC CGGAGATGTGATCGGAACGAGGACGGAGTTTGAGGACGTGAAGTCGACGCCGTTTCAGCCGTACAGTGAGGTGTTTGGGT TGCAGAGGTTTAGGGAGTGCGAGCTTATTCATGGAAGGTGGGCCATGCTCGCCACGCTTGGTGCTCTTACCGTTGAGTGG CTCACCGGAATCACCTGGCAAGACGCCGGCAAGGTGGAGCTTGTAGAAGGGTCATCATACCTTGGTCTACCACTCCCATT CTCAATCACCGCATTGATTTGGATTGAAGTTTTGGTGATTGGGTACATTGAGTTCCAAAGAAACGCTGAGCTTGACCCTG AGAAGAGGCTGTACCCAGGTGGCAGCTTCTTCGACCCTCTCGGCTTGGCCGCGGACCCTGAGAAGAAGGCCACCCTTCAA TTGGCAGAAATCAAGCATGCTCGTCTTGCCATGGTTGCTTTCCTTGGCTTTGCTGTCCAAGCTGCTGCCACTGGCAAAGG CCCTCTTGATAACTGGGCTACCCATTTGAGTGACCCTCTTCACACCACCATCATTGATACCTTCTCATCCTCTTGA
Protein sequence (LotjaGi3g1v0210100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATATATAAATSSFIGTRLRDAQPSLGRVQARFGFGIGKKKAAPKKVARPGPGTERPLWYPGAKAPEWLDGSLVGDYGFD PFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEFEDVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEW LTGITWQDAGKVELVEGSSYLGLPLPFSITALIWIEVLVIGYIEFQRNAELDPEKRLYPGGSFFDPLGLAADPEKKATLQ LAEIKHARLAMVAFLGFAVQAAATGKGPLDNWATHLSDPLHTTIIDTFSSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 146 | 146 | - | – | |
| PANTHER | 5 | 289 | 285 | 9.0E-149 | ||
| PANTHER | 5 | 289 | 285 | 9.0E-149 | – | |
| SUPERFAMILY | 53 | 289 | 237 | 6.67E-58 | – | |
| Pfam | 65 | 261 | 197 | 1.3E-51 | ||
| Gene3D | 133 | 289 | 157 | 1.9E-68 | ||
| TMHMM | 142 | 164 | 23 | - | – | |
| Phobius | 147 | 166 | 20 | - | – | |
| Phobius | 167 | 185 | 19 | - | – | |
| TMHMM | 179 | 201 | 23 | - | – | |
| Phobius | 186 | 205 | 20 | - | – | |
| Phobius | 206 | 291 | 86 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Photosynthesis, light harvesting | Absorption and transfer of the energy absorbed from light photons between photosystem reaction centers. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi3g1v0210100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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