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LotjaGi3g1v0212400.2

Overview

Field Value
Gene ID LotjaGi3g1v0212400
Transcript ID LotjaGi3g1v0212400.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Disease resistance protein (TIR-NBS-LRR class); TAIR: AT5G36930.1 Disease resistance protein (TIR-NBS-LRR class) family; Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|A0A072UCJ6|A0A072UCJ6_MEDTR Disease resistance protein (TIR-NBS-LRR class); Found in the gene: LotjaGi3g1v0212400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:31883454..31888953) extracted from Lotus japonicus Gifu genome v1.2.

CTTATTCTAGGGTTCATATTTTACAGGAACGAAAGTGAGGATATCATGAAAGTAGTTGAAGATGTTACTGATTTACTAGG CAAGACAGACATTATCGTTGCTGAGCACCCAGTGGGGGTGGAAGCTCGCGTTCAAAATGTGATTCAAATATTAAAAAGCC AGCAATCCAAAGATCCTCTATTCCTTGGGATATGGGGGATGGGGGGGCTGGGTAAAACAACTATTGCCAAAGCCGTGTAT AATCGAATTCGTCGTGAATTTGAGACTAAGAGCTTCCTCCTAAATGTCAGAGAAGTTTGCGAACAAAATAATGGCATAGT TTCTTTGCAACAGAAGCTTCTTTCTGATATCTACAAAACAACGAAGATAAAGATAGATACAGTTGAAATGGGAAAAGAAG AACTGAAGAGAAGACTCAGTCAAAAGACAATATTTCTTGTGCTTGACGATGTGAATGATAAAGAACAATTGGATGCATTG TGTGGAAGTCGTGAATGGTTTGGTTACGGAAGTAGAATAATCACAACTAGAGATGAAAATATAGTTAAAAAGGAGTTTGG AGTTGAAATTGTGTATAGAATAAAAGAAATGGACAACAAGGAGTCTCTTGAGCTTTTTAGTTGGCATGCATTTAAGAAAC CAAGTCCCGAGGAAGGTTTTGCTGATCTTTCAAGCGATGTAGTTAAATACTGTGGGGGGTTGCCACTAGCTCTTCAAGTA ATTGGGTCCTTTTTGTTGACTAGGAGGAGGGTAACAGTGTGGAAGAGTGTACTGGAGAAACTCAAAATGATTCCCAATAA AAAAGTTATGGAGAAGCTTAGAATAAGTTTTGACGGTTTAAGTGATGATGTTAAAGAAATATTCCTTGACATAGCGTTCT TCTTTATTGGAATGGAACAAGATGATTTTATTGAGATATTAAATGACTGCGGTCATTTTGCAGAAATTGGAATAAGTGTC CTCGTACAACAATGCCTTATAACTATTGATAGGAAGAACAGGATCAGAATGCATGATTTGCTACTAGACATGGGAAAAGA AATCGTCCGCGAGAATTCAGCTGAAGAGGGCAAGGAGCCTAGTAGATTATGTCGCTACAAGGATGTGGATTTTCTATTAT CCAAAGATACTGTAAGTCCTTTATGCATATATTGTTTTTGTTTCTAAATTATCTAAAGTCAGTGGATGCTAAATGACCTT TAATGACCCAGTTATTTCTTGTCCTATTTTCTTAGTAATTGTGAATATTATCTTGGTTATGAATCCTCTTGTGCTACTTG GTTCCCAATAACAGATTATGGGCATCAAATCTCTTACTTGTATTCAGTTACTCTAGTAGATTTTGAAATGCCATTTACCT AAGCTCTATGTCTCATTTTTTTTCTGTTGATTTTGTTTTACAGAGAACAGTGGATGTTCAGGGACTGACTTTGAAGTTCC CAATAACAGATTATGGGCATCAAATCTCTTACTTGTATTCAGTTACTCTAGTAGATTTTGAAATGCCATTTACCTAAGCT CTATGTCTCATTTTTTTTCTGTTGATTTTGTTTTACAGAGAACAGTGGATGTTCAGGGACTGACTTTGAAGTCTCCAGAA AAGGATACAACTTATAAGTTGGAAGCCAAAGCATTTGAGAAGATGGATAAACTTCGATTGCTTCAACTTTCTGGTGTACA ACTAGATGGAGATTATAAATATCTCTCAAGAGATCTTAGATGGCTTTGCTGGCATAGATTTCCTTTAAAATATACACCAC CAGACTTTCACCAAAAAAGTTTAGTTGCCATTGACTTCAAATATTCCAATCTGGAACAAGTTTGGAAGAAGTCCCAGGTA CGAGTTAAAAGTAATATTTTAAATATTTTAAATTTGGAAATTTGATATAAGCTGGTAGGAAAGTTTGGTCTAGCTAGGAG CCAAAGAGAAATGAATAATACATATAGGCGTGACTAAAAAAGTAAAATGAATAATACATATATTTCCGGGACATTTTAAA CCACCAGACGTCTTTGTATGATTTTTTTCTTCTTTTTCATCTATTTTTCCTATGCTGCTTTTCTAACAAGTGGTTTCAAA TTCTTTCCAACAGATGCTGAAGAAGCTAAAATTTCTGAATCTTAGTCATTCTTTTAACTTGAGACAAACTCCAGACTTAC CAAACCTTGAAAAGTTAGTACTGAAAGGTTGTACTAGTTTGTCTTTGATTTCTCATACTACTGGAAATCTCAATAAACTG CTTCTGATAAATTTGCAGAACTGTACAAGCCTTCATTCACTTCCAAAAAGTCGTTAAAAACTCTCATTTTGTCTGGATGT TCAAAAATTGACAAGTTGGAAGAGGATATAGAACAAATGGTATCTTTAACCACCTTGGTTGCAGATAACACTGGTATAAC AAGAGTTCCTTTTGCTGTAGTGAGATCAAAAAGCATTGGATTTATTTCTTTGTGCGGCTATGAAGGATTCTCACGTGATG TATTTCCATCAATAATACAATACAGTCTTGGATGTCTCCAACTAATAATATTCTATCCCAAGTTCGAGCATCTGCTGCAG GGATGTCCCTTAACCTCTTGGATGAAGAAAAAAGTAGATCCTATGGTCTATTACATGCTCTAAAAGATCTTTCCAATCTT CAGCGCCTTTGGGTGAAGTGCGACTCAGAAGTTCAACTGAATCAAAGTGTAGAAAGAATTTTGGATTCACTAAAAGCCAC AAATTGTGCAGAATTAGAAAGAACACCAAGCACATCTCATGTCCCAAACAATAGTTCTTCTGTAATTGATTGTCACAGCC AAGTTCGCATTTCAGGGTCAAAAAATTCCTCGACTTCTCTTTTGATACAAATGGGAATGAAGTGTCGTGTCTCCAATATT CTCAAAGAAATCATTTTACAGGTTCTCTCTCTCTCCCCTCTTTACACACATGCTACCATTGCCTTATAATGTCCTATTTA CAAATGAGTTTGTGTTATGCATTACAATTTTAAATAATTTTATAGATCTTTACTCACTCGTTCATTTAAATAAGTTATAG AATCATTTTTATTAATGTTCGCTGTGCAGAAAAATTACCCCATTGGGTCGGGTTTACTTCCAAGTGACAACTATCCTGAT TGGTTAACATTCAATAGTGGATGTTCTTCTGTAACTTTTGAAGTCCCTCAAGTGGATGGGCGTAACTTGAAGGCAATCAT GTGCATTGTCTATTCTTCTTCCTTAGACAACATCACATCAGAAGGCCTGAAAAATTTGTTGTTGATAAATTGCACAAAGA ACACCATTCAGCTCTATAAGAAAGATGCTTTAGATTCCTTCCATGAAGAGAAGTGGCTGAAAGTAGTTTCAAATATAGAA CCTGGTAATGAAGTGAAGGTGGTTGTTGTTTTTGAGAATGGATTCACTGTGAAGAAGACAGTTGTTTATCTCATATATGA TGAACCAATTGACAAAAAGGCAGAGCACTACCATGAGCCAGATAAGAATGCTGCTATTTCCGGTGGTGATGAAAATGTAA GTAGTAATAATAGTCTAAACTTATGCACATTCTATATGAATGTTGTTTTTCATTATTTTTATGCAAGCAACTCAGTTACC TCATAAATTTGGTAATAGATGTAGGACACAATGAACTGGTTCAACTGCTAGAATGGATTAGAATGAGCACCTTTGAACTT CAATTTTATTTCTTCTAACTGTATTGTTTCATTCACGAGGTTTTGTTTCTCTCTGTTTATGGTATTAGAGATTTGTTAGG CTCTTTTCCATACTTCCTGCCTGTGTGCGGGCCGTTCTGACTTCAAAGCCTTTCTGGTTGATCGGTCTAGCTGTTATCTT GATTTGGTCTCGCTACTTCTCTAACCAGCGAAGGAGACATAAACCCATTTTAAGGTACTACAAACCCATCTTTTTTTGGT TTCGCAAAACATTTGCATGTTAAGAATCATTTTTTGCTTATGAAATCCATTTAACCTTTCCTAATAAGCTATCTATCATA AGTCAAAGGTTATCATCCATTTAATTTGCGGTGTATATTTTTTATTTTGGGTTTATATTAGTTCCCTCTAAACCATAACT TTGAATTTAGATCTTGATGACTCATTTCCCTTTGGAATTCATGATTGTATGCTACTATGCAGAGTGAAGCTTTGTATCAA TAATGATTTGATTTCTAATATTTGAGATGCTTCGTGTTGCTTTATTGGGTGTGAAGAGGTGGGATGAAGAAAATGAATCA ATCTTTCTATGAAAGATGGGTTGATGCATACCAACAGGGCATTTATTCCAAGTACTTCAAATTTCTAAAAGTCATTGGAC AAGTTTGCAAAACAAGACGCATGAACTGATTGAACACAATGGTGTTTAAAGCCTTTCTGGTTCGGTCTGGCTGGTATCTT GATTGGGTCTTGCTGCTGAAATGGAATTGTAACCCCATTTCAAGGTACGAACCCATCACTTTTTCTTCCACGTGTCATTT ATACATTCAGAGCAAATTTTTGATATCTGTGATATACTATTAGAGTTTTGATACATACACACCTCGTTTTCTCTCCTCAT ATCATTTCACTTACTTCTCTTCATATCTCTCTTATTTTTCTATCACATCATTCTTTTTTCTTTCTTTTAACTGTTTCCAT ATTTTTAAGCTCTCCTAAGAAGCTATCAATCATCAATAACAGGCTATCGTCCATTAATTTATCTTGAACATTCTTTTTTT TGGGCTTATAGTAGGTCCCTCTGTCTGAACCATAACTCTGTAACTAGAGCCTCATTACTCACTTTCTGTTGGAATTCATG ATTGCATGCTATTATGCCTAGTAAAGCTTTTATCAATAATGATTTAATGCAAATATTTGAGGTACTTCCTGCTACTTTAT TGTTATGTATGAAGGTAAATGTCCACTGACAGCGCTCAAGAATCCAATAATCAAGTAGTAAGTGCTTAAACTCCCTCAGG TGATGTCCACCTGGATGTGAAGAAGTGGGATGAAGAAAAAGAATCAACCATTCCATTATGGATTGGTTGATGCCACCATC AGGGCATTTATTCTGAGTATTTCAAATTTCTGAAAGTCTTTGGACGAGATTGAAAAGCAAGATGAGCAGAAACTGATTGA TGACAATTAATGGCAACAAGAAAGGGAGGAAAAGGCTAAACAGCGAGGAATTGTCTTCCGATCCAAATTAGTCCAAGATT CAATGTCTTCCTTAGACCTTTGTGTCATTTTAGTTGTTAGCTGTGTTTTACATTTCGTTTTCTTTCAAGTCCACTTATGT TATAGGAAAAGGCTATCGTCCATTGTCAATAGGAAATTCTCAAGAAGAAATGAAATAGTTTCCTTTGACTTGAGATTATC ATAGTAATTAACAAGTTATTTATTATACTTTAATTTGGGACATGTAATGTCCTAGGACGTTACTTGAATGAATATTGGGT CTGATTAAATGCTTGTAGAATTAATGATTAATCAAGATGGAATCCATCAACTTTTGGTTA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0212400.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAAAGTAGTTGAAGATGTTACTGATTTACTAGGCAAGACAGACATTATCGTTGCTGAGCACCCAGTGGGGGTGGAAGC TCGCGTTCAAAATGTGATTCAAATATTAAAAAGCCAGCAATCCAAAGATCCTCTATTCCTTGGGATATGGGGGATGGGGG GGCTGGGTAAAACAACTATTGCCAAAGCCGTGTATAATCGAATTCGTCGTGAATTTGAGACTAAGAGCTTCCTCCTAAAT GTCAGAGAAGTTTGCGAACAAAATAATGGCATAGTTTCTTTGCAACAGAAGCTTCTTTCTGATATCTACAAAACAACGAA GATAAAGATAGATACAGTTGAAATGGGAAAAGAAGAACTGAAGAGAAGACTCAGTCAAAAGACAATATTTCTTGTGCTTG ACGATGTGAATGATAAAGAACAATTGGATGCATTGTGTGGAAGTCGTGAATGGTTTGGTTACGGAAGTAGAATAATCACA ACTAGAGATGAAAATATAGTTAAAAAGGAGTTTGGAGTTGAAATTGTGTATAGAATAAAAGAAATGGACAACAAGGAGTC TCTTGAGCTTTTTAGTTGGCATGCATTTAAGAAACCAAGTCCCGAGGAAGGTTTTGCTGATCTTTCAAGCGATGTAGTTA AATACTGTGGGGGGTTGCCACTAGCTCTTCAAGTAATTGGGTCCTTTTTGTTGACTAGGAGGAGGGTAACAGTGTGGAAG AGTGTACTGGAGAAACTCAAAATGATTCCCAATAAAAAAGTTATGGAGAAGCTTAGAATAAGTTTTGACGGTTTAAGTGA TGATGTTAAAGAAATATTCCTTGACATAGCGTTCTTCTTTATTGGAATGGAACAAGATGATTTTATTGAGATATTAAATG ACTGCGGTCATTTTGCAGAAATTGGAATAAGTGTCCTCGTACAACAATGCCTTATAACTATTGATAGGAAGAACAGGATC AGAATGCATGATTTGCTACTAGACATGGGAAAAGAAATCGTCCGCGAGAATTCAGCTGAAGAGGGCAAGGAGCCTAGTAG ATTATGTCGCTACAAGGATGTGGATTTTCTATTATCCAAAGATACTAGAACAGTGGATGTTCAGGGACTGACTTTGAAGT CTCCAGAAAAGGATACAACTTATAAGTTGGAAGCCAAAGCATTTGAGAAGATGGATAAACTTCGATTGCTTCAACTTTCT GGTGTACAACTAGATGGAGATTATAAATATCTCTCAAGAGATCTTAGATGGCTTTGCTGGCATAGATTTCCTTTAAAATA TACACCACCAGACTTTCACCAAAAAAGTTTAGTTGCCATTGACTTCAAATATTCCAATCTGGAACAAGTTTGGAAGAAGT CCCAGATGCTGAAGAAGCTAAAATTTCTGAATCTTAGTCATTCTTTTAACTTGAGACAAACTCCAGACTTACCAAACCTT GAAAAGTTAGTACTGAAAGGTTGTACTAGTTTGTCTTTGATTTCTCATACTACTGGAAATCTCAATAAACTGCTTCTGAT AAATTTGCAGAACTGTACAAGCCTTCATTCACTTCCAAAAAGTCGTTAA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0212400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MKVVEDVTDLLGKTDIIVAEHPVGVEARVQNVIQILKSQQSKDPLFLGIWGMGGLGKTTIAKAVYNRIRREFETKSFLLN VREVCEQNNGIVSLQQKLLSDIYKTTKIKIDTVEMGKEELKRRLSQKTIFLVLDDVNDKEQLDALCGSREWFGYGSRIIT TRDENIVKKEFGVEIVYRIKEMDNKESLELFSWHAFKKPSPEEGFADLSSDVVKYCGGLPLALQVIGSFLLTRRRVTVWK SVLEKLKMIPNKKVMEKLRISFDGLSDDVKEIFLDIAFFFIGMEQDDFIEILNDCGHFAEIGISVLVQQCLITIDRKNRI RMHDLLLDMGKEIVRENSAEEGKEPSRLCRYKDVDFLLSKDTRTVDVQGLTLKSPEKDTTYKLEAKAFEKMDKLRLLQLS GVQLDGDYKYLSRDLRWLCWHRFPLKYTPPDFHQKSLVAIDFKYSNLEQVWKKSQMLKKLKFLNLSHSFNLRQTPDLPNL EKLVLKGCTSLSLISHTTGNLNKLLLINLQNCTSLHSLPKSR
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11017:SF271
2 516 515 2.7E-208 –
PANTHER
PTHR11017
2 516 515 2.7E-208 –
Gene3D
G3DSA:3.40.50.300
10 172 163 8.9E-31 –
SUPERFAMILY
SSF52540
16 276 261 8.31E-62
IPR027417
Pfam
PF00931
26 250 225 1.9E-36
IPR002182
PRINTS
PR00364
46 61 16 2.4E-23 –
PRINTS
PR00364
123 137 15 2.4E-23 –
Gene3D
G3DSA:1.10.8.430
181 266 86 2.9E-7 –
PRINTS
PR00364
216 230 15 2.4E-23 –
SUPERFAMILY
SSF46785
253 354 102 8.16E-12
IPR036390
Gene3D
G3DSA:3.80.10.10
372 522 151 7.5E-14
IPR032675
SUPERFAMILY
SSF52058
382 519 138 6.97E-15 –
PRINTS
PR00364
499 515 17 2.4E-23 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0043531
Molecular function ADP binding Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0212400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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