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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0219200 |
| Transcript ID | LotjaGi3g1v0219200.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT1G68930.1 pentatricopeptide (PPR) repeat-containing protein; Swiss-Prot: sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930; TrEMBL-Plants: tr|K7KDK1|K7KDK1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0219200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:33028425..33030497) extracted from Lotus japonicus Gifu genome v1.2.
TTTCAGAATCTTTTTAGATTTCGCCACAAACTATGTGACTCCAAAGCAGTGGCTCAACTTATCCAAACCTGTGCACAAGC CAAAGAATTGAGCAAAGGAAAACAGTTACATGCTCAGCTGATCCGAGGAGGGTGTTTACCATGCACCTTTCTGACAAATC ACCTCCTCAATTTGTACTCCAAATGTGGAGAGCTTGATTATGCTATCAAGCTGTTTGACAGAATGTCTAAGAGAAACATG GTCTCTTGGACAGCTATGATTACTGGGTTTTTTCGTAGTTTGAGGTTTCGGGAGGCTTTGGATACCTTTTGTCAAATGAG GGCTGAAGGAGAGACAGCCTCGCAATTTGCACTTTCTAGTGTGCTTCAAGCTTGCGCCTCTCTAGGGTCAATTCAGTTTG GGGTACAGGTGCATTGTCTCGTTGTGAAAAGTGGGTTTGGCTGTGAACTGTTTCTGGGTAGTAATCTGACTGATATGTAT TCGAAGTGTGGGGAGGTGTCTGATGCTTGTAAAGTTTTTGAAGAAATGCCTTGTAAGGATGAGGTGTTGTGGACCTCAAT GATTGATGGCTACGTGAAAAATGGAAATTTTGAGAAAGCTTTAATAGCTTATAAGAAAATGGTCACTGATAATGTCTTTA TTGATCAGCATGTATTATGTAGTACTTTGAGTGCTTGCACTGCACTTAAGGCTTTTAGTTTTGGGAAGTCCCTGCATGCA ATTATTGTGAAGTTTGGATTTGAATATGAGACTTTCATAGGAAATGCCTTAACAGATCTGTATTCAAAGTCTGGGGATAT GGTAAGTGCTTCAAATGTCTTCCAAAGTGATTCTGGTTGTAGAAACATAGTGTCTTTTACTGCTATAGTTGATGGTTATG TTGAGATGGATCAACTTGAGAAGGCTTTAAATGCTTTTATTGACTTGCGAAATTCGGGAATTGAACCTAATGAGTTCACT TTCTCTAGCTTGATCAAGGCTTGTGCTAACCAAGCAAAACTAGAACATGGGAGCCTGCTCCATGGCCAAGTTGTCAAATT CAACTTTGACAGAGACCCTTTTGTTTCTTCTGCCCTAGTTGATATGTATGGAAAGTGCGGGTTATTTGACCACTCAATCC AATTGTTTGATGAGATTGAAAATCCAAATGATACAGCCTGGAATACATTGGTAGGAGTTTTTGCACAGCATGGTTTAGGA AGAAATGCCATTGAAACTTTTAATGAGATGGTCGACAGAGGGCTGAAACCAAATGCAGTAACATTTGTGAACCTTTTAAA AGGATGTAGTCATGCAGGAATGGTTGAGGATGGGCTAAACTACTTTTATTCTATGGACAAGATTTATGGGGTAATGCCTA GAGAAGAACATTACAATTGTATTATTGATTTGCTTGGTAGAGCTGGGAAGCTTAAAGAAGTAGAAGATTTTATAAATAGC ATGCCTTTTGAACCAACTGCTTTTGGCTGGTGTTCTTTTCTTGGGGCTTGTAAAACCCATGGTGATAAGGAAAGGGCCAA ACTTGCAGCATACAAATTGATGAAGCTTGAACCTGAAAATAGCGGGGCTCATGTTTTGCTTTCAAATATTTATGCAAAAG AAAGACAATGGGAAGATGTAAGATGTTTGAGGAAAATGATAAGAGATGGCAACATGAAGAAATTGCCAGGTTACAGCTGG GTTGATATTGGAAATGAAACTCATGTATTTGGGGTTGAAGATTGGTCTCATCCTCGAAAGAAAGAAATTTATGAAAAGCT TGATAGTCTTCTTGATCAGATAAAGATTGTTGGCTATGTTCCTCAAACAGAATCAGTTCTGATTGAAATGGATGACACTT TGAAGGAGAAGCTTCTTCATAATCACAGTGAAAGGATTGCTGTGGCTTACTCATTACTAGTCAGCCCCATTGGGAAGCCA ATCATTGTCAAGAAAAATTTAAGAGTTTGCTCTGATTGCCATTCTGCGTTCAAATATATTTCTAAGGTCACTGAGAGAAA TATCATTGTCAGAGATATCAGCAGGTTTCATCATTTTTCCAATGGTTCTTGCTCCTGTGGAGATTACTGGTAA
CDS sequence (LotjaGi3g1v0219200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTAAGAGAAACATGGTCTCTTGGACAGCTATGATTACTGGGTTTTTTCGTAGTTTGAGGTTTCGGGAGGCTTTGGA TACCTTTTGTCAAATGAGGGCTGAAGGAGAGACAGCCTCGCAATTTGCACTTTCTAGTGTGCTTCAAGCTTGCGCCTCTC TAGGGTCAATTCAGTTTGGGGTACAGGTGCATTGTCTCGTTGTGAAAAGTGGGTTTGGCTGTGAACTGTTTCTGGGTAGT AATCTGACTGATATGTATTCGAAGTGTGGGGAGGTGTCTGATGCTTGTAAAGTTTTTGAAGAAATGCCTTGTAAGGATGA GGTGTTGTGGACCTCAATGATTGATGGCTACGTGAAAAATGGAAATTTTGAGAAAGCTTTAATAGCTTATAAGAAAATGG TCACTGATAATGTCTTTATTGATCAGCATGTATTATGTAGTACTTTGAGTGCTTGCACTGCACTTAAGGCTTTTAGTTTT GGGAAGTCCCTGCATGCAATTATTGTGAAGTTTGGATTTGAATATGAGACTTTCATAGGAAATGCCTTAACAGATCTGTA TTCAAAGTCTGGGGATATGGTAAGTGCTTCAAATGTCTTCCAAAGTGATTCTGGTTGTAGAAACATAGTGTCTTTTACTG CTATAGTTGATGGTTATGTTGAGATGGATCAACTTGAGAAGGCTTTAAATGCTTTTATTGACTTGCGAAATTCGGGAATT GAACCTAATGAGTTCACTTTCTCTAGCTTGATCAAGGCTTGTGCTAACCAAGCAAAACTAGAACATGGGAGCCTGCTCCA TGGCCAAGTTGTCAAATTCAACTTTGACAGAGACCCTTTTGTTTCTTCTGCCCTAGTTGATATGTATGGAAAGTGCGGGT TATTTGACCACTCAATCCAATTGTTTGATGAGATTGAAAATCCAAATGATACAGCCTGGAATACATTGGTAGGAGTTTTT GCACAGCATGGTTTAGGAAGAAATGCCATTGAAACTTTTAATGAGATGGTCGACAGAGGGCTGAAACCAAATGCAGTAAC ATTTGTGAACCTTTTAAAAGGATGTAGTCATGCAGGAATGGTTGAGGATGGGCTAAACTACTTTTATTCTATGGACAAGA TTTATGGGGTAATGCCTAGAGAAGAACATTACAATTGTATTATTGATTTGCTTGGTAGAGCTGGGAAGCTTAAAGAAGTA GAAGATTTTATAAATAGCATGCCTTTTGAACCAACTGCTTTTGGCTGGTGTTCTTTTCTTGGGGCTTGTAAAACCCATGG TGATAAGGAAAGGGCCAAACTTGCAGCATACAAATTGATGAAGCTTGAACCTGAAAATAGCGGGGCTCATGTTTTGCTTT CAAATATTTATGCAAAAGAAAGACAATGGGAAGATGTAAGATGTTTGAGGAAAATGATAAGAGATGGCAACATGAAGAAA TTGCCAGGTTACAGCTGGGTTGATATTGGAAATGAAACTCATGTATTTGGGGTTGAAGATTGGTCTCATCCTCGAAAGAA AGAAATTTATGAAAAGCTTGATAGTCTTCTTGATCAGATAAAGATTGTTGGCTATGTTCCTCAAACAGAATCAGTTCTGA TTGAAATGGATGACACTTTGAAGGAGAAGCTTCTTCATAATCACAGTGAAAGGATTGCTGTGGCTTACTCATTACTAGTC AGCCCCATTGGGAAGCCAATCATTGTCAAGAAAAATTTAAGAGTTTGCTCTGATTGCCATTCTGCGTTCAAATATATTTC TAAGGTCACTGAGAGAAATATCATTGTCAGAGATATCAGCAGGTTTCATCATTTTTCCAATGGTTCTTGCTCCTGTGGAG ATTACTGGTAA
Protein sequence (LotjaGi3g1v0219200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSKRNMVSWTAMITGFFRSLRFREALDTFCQMRAEGETASQFALSSVLQACASLGSIQFGVQVHCLVVKSGFGCELFLGS NLTDMYSKCGEVSDACKVFEEMPCKDEVLWTSMIDGYVKNGNFEKALIAYKKMVTDNVFIDQHVLCSTLSACTALKAFSF GKSLHAIIVKFGFEYETFIGNALTDLYSKSGDMVSASNVFQSDSGCRNIVSFTAIVDGYVEMDQLEKALNAFIDLRNSGI EPNEFTFSSLIKACANQAKLEHGSLLHGQVVKFNFDRDPFVSSALVDMYGKCGLFDHSIQLFDEIENPNDTAWNTLVGVF AQHGLGRNAIETFNEMVDRGLKPNAVTFVNLLKGCSHAGMVEDGLNYFYSMDKIYGVMPREEHYNCIIDLLGRAGKLKEV EDFINSMPFEPTAFGWCSFLGACKTHGDKERAKLAAYKLMKLEPENSGAHVLLSNIYAKERQWEDVRCLRKMIRDGNMKK LPGYSWVDIGNETHVFGVEDWSHPRKKEIYEKLDSLLDQIKIVGYVPQTESVLIEMDDTLKEKLLHNHSERIAVAYSLLV SPIGKPIIVKKNLRVCSDCHSAFKYISKVTERNIIVRDISRFHHFSNGSCSCGDYW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 64 | 64 | 1.5E-7 | ||
| Phobius | 1 | 21 | 21 | - | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| ProSiteProfiles | 5 | 39 | 35 | 9.788 | ||
| Pfam | 7 | 36 | 30 | 1.7E-5 | ||
| TIGRFAM | 7 | 36 | 30 | 2.7E-5 | ||
| Phobius | 7 | 17 | 11 | - | – | |
| PANTHER | 8 | 153 | 146 | 3.4E-96 | – | |
| Phobius | 18 | 21 | 4 | - | – | |
| Phobius | 22 | 616 | 595 | - | – | |
| ProSiteProfiles | 40 | 74 | 35 | 6.029 | ||
| Gene3D | 67 | 156 | 90 | 2.0E-16 | ||
| ProSiteProfiles | 75 | 105 | 31 | 6.752 | ||
| Pfam | 82 | 104 | 23 | 0.015 | ||
| ProSiteProfiles | 106 | 140 | 35 | 10.633 | ||
| TIGRFAM | 108 | 141 | 34 | 2.0E-6 | ||
| Pfam | 108 | 137 | 30 | 1.4E-7 | ||
| PANTHER | 144 | 263 | 120 | 3.4E-96 | – | |
| Gene3D | 157 | 272 | 116 | 2.4E-17 | ||
| ProSiteProfiles | 208 | 242 | 35 | 10.337 | ||
| Pfam | 208 | 256 | 49 | 7.9E-12 | ||
| TIGRFAM | 210 | 244 | 35 | 1.4E-4 | ||
| ProSiteProfiles | 243 | 277 | 35 | 7.465 | ||
| PANTHER | 263 | 478 | 216 | 3.4E-96 | – | |
| ProSiteProfiles | 278 | 308 | 31 | 7.662 | ||
| Pfam | 283 | 306 | 24 | 0.053 | ||
| Gene3D | 285 | 495 | 211 | 5.5E-36 | ||
| Pfam | 308 | 356 | 49 | 1.8E-11 | ||
| ProSiteProfiles | 309 | 343 | 35 | 11.071 | ||
| TIGRFAM | 312 | 345 | 34 | 9.6E-6 | ||
| ProSiteProfiles | 344 | 379 | 36 | 7.794 | ||
| ProSiteProfiles | 380 | 410 | 31 | 7.114 | ||
| Pfam | 383 | 407 | 25 | 0.0058 | ||
| TIGRFAM | 384 | 407 | 24 | 0.0021 | ||
| ProSiteProfiles | 446 | 480 | 35 | 5.612 | ||
| Pfam | 482 | 605 | 124 | 2.4E-37 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi3g1v0219200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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