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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0220600 |
| Transcript ID | LotjaGi3g1v0220600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb transcription factor; TAIR: AT1G66370.1 myb domain protein 113; Swiss-Prot: sp|Q9FNV9|MY113_ARATH Transcription factor MYB113; TrEMBL-Plants: tr|I3S6E6|I3S6E6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0220600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:33236434..33239579) extracted from Lotus japonicus Gifu genome v1.2.
CAAATGTCCATTTACTATAATTTCCATGCATGTAAAATAGCATAGTAATACACTTAGACTTACAAATAAATAATGCTCAC ATTTAATAAACACTTGAACACTTAGAGTCAGAAAAGAAGATAAAAAAGAGAGTAGTTGATGTGATATATGATGAATATGA TAATTAAGAAGAGAAATAAAGAAAAAAAGAGAGATATTTATTAGGTATCTATACTATTTGTATGTTTAAATATCATCACT ATTGAAAGTGCATATCATATGACTATGTACTATGCCTTTCTGGCATGTTCGGCACAAAGTACATCAAGAAGCTTTTTGTG TGTGTGCTGCTATATATCTATAAAGTTGAAGCTGGAGGCCAAGAAAAAGAGGAGTGACACAGAGAATATGGGTGGAGTTG CATGGACAGAAGAAGAAGACCACCTTCTTAAGAAATGCATAGAACAATATGGAGAAGGAAAGTGGCATCGCATTCCTCAC TTGGCTGGTAAACTGAAAAGTTCAATATTCATGTTCATATTGCATGCACCTTGTATATTATTTATTATCTACTTTTTATA TATATGATATTGTTTTTATGACTGATTGGTTAATCTTTAACATTGTGGTAAAGGTTTAAACAGGTGCAGGAAGAGCTGTA GGCTAAGATGGTTGAACTATCTCCGTCCCAACATCAGAAGAGGAAATTTTACTGACGAAGAAGTGGATATGATTGTCAAA CTCCACAAACTATTGGGCAACAGGTCAGCTTTTACCTTCTGATCTTTGTTTTTCTTCTCATGTATATTTTCTTTATGCTT GAACCTTCACTTAATTGGTTAAAACAAAAAGTAGGTTCCCTAATGTGCTTGTGCAATGTGCATGTATGTAAATGTATCCT AATCAATGTTTCTAATTTTGATTCGCAACAGCAACATTAAGGTTTTAGGGCTCTCTATACACTAGTGAAGTACACAGTTT AATTAAACGTTGATGATAATAAATAATTTCGACATAAGCCTTTGAGGAGCTTATTAAAATAATAAGGTCAAAATATATTT TAAGTATGTATAAATACTTATTCATAAATTGATATGAGTTGCTTATTAAATCAAAACAGCTCCTATCCATAAAATTGGAT CTTCTCTCCCAAACACTTGCTTATTAAATCATAATATGGCAGCCTAGGATGCACGGGTACCGGTACGGGTGCGGTACCGG GTACGTGGTACGACATTTTTCAGAAAATCCTAGGTGCGGGTACGCCTGGGTACGTTAATATAGATATATGTATATTTATG TATATAGTGAAGTAAAAATAGAAAATAAAGGCTATATCAATCCTCTAACATAGACAATAGCACAAAATCAGAATAGCTCA TAAACAACTCCTAACATAAAGCTTTAAACGTGAGAGAGAAGAGCAGAAGAGAGGTAGAAGAGAGGTAGAGGCGTAGAGAA CTTACGTGAGACTGTGAGAGACTCAGAGAGAAGAGGAGAAGAAACGTCAGTGCAGAAGAGAGGAGAAAAACGGCTCAAGT GGAGAGGGTGAGAATTGAGAACGTGACTGAGAAGTAAATTAGGTTTATTTACTATCTGAGAAAATATTTTTTAATTAGTA AAAAAAATATCAATTTTTTAGGTTAAAGTACCCAGCGGCGTACCTGGGCCACACCGCCGACGCACCCAATGACCTGCGGC GTACCCGTTGATTTTTGGTGCGCACCGGGGCGTACCCACGACGTACCAGCACTCGGTACGCACTTGGTGCCGGTGCGGTG GCCAAATTGGCGTACCCGTGCTTCACAGATGGCAGCCGAGACCGCTCTTAATTTGGCGTGCCATTGACGCTCATGAGTGT ATTTGTCCATTTGGTAGTCGTCCTTGTCTCCTTAGGCTGGATGTTAGTGAGGCGGCCGGTGTCATATGTGTCTGTTTGAG CCTTTGGCATAGTGGGGCGTAGCCCCCTCCATCCTAAATAAAAATCATAAAATTTCACAATTTCAAGGATGGAATGATGA TTTAAAATCTTGATACTTATGATTCTCTCTCTTCAGGTGGTCACTTATTGCTGGAAGGCTAGCAGGAAGGACAGCCAATG ATGTGAAGAACTACTGGAACTGCCATCTGAGTAAGAAATTGAATGCTCAAGTAGTTGATCAAGAGAAACACATGGTCACA AACATTGATGTTATTAAGCCCCAGCCTGCAGGGAACGTCATTATTGGTACAAGCTCAATTAGTAGCAAAAGGAGCCAGCT GGGAGAGTTATCTCCAAGTCCCCCACCAGCAGCACCACACCACCAGAGTACTGGCATAATTTTTTCACCAACTTTTGATG GTGGTCATGGACAGAGCCAGATGCTTGAATTAGAGGAAGATCATAACATCTGTTCTTACTTGGACCAACAGGGCCTTGTT GGTATGCTGCCAATGGAGCTTCAATTTGATGAAGTGAAAGCAATGAGTAATGGACAGAATAGTAGCAGCCAGTGGGATTG GGATGAGATGCTCTTTGACATGGACCTGTATAATGATTCTTCTTTTAGATTCTTCTAGCTGCTAGGGAAGATCTCTACAT ACCTCTAGAGATTGATATTATTAGCTAAGGTCATAGTTACATGTGTTTATGTGGAACATGGTAATTGAATTTGTATTGGT GACTATGCCAAGGATTGGAAATTAAAGATAACAAAGGGTGAAACTTTTCTAGGTGGTAGCATATATAGTAATAGTAGATA TGCATACAACAATGCAAATTAGAATATCTTGTTCACTTGCATGAACATATGGTTTAATGCGCATGTGTAAGGAAAAGAAG CCTAAGATCCATTCCCTGAGAGTCTTGACCAGAAACAAACCAATGTATTAATCGAAACATGTTCTCATTTCTCTTCATCA ATGCCAATTTGTTCGGTTGGGAATGTGAACAAACTTTTCATCAAAGCTTCTTTAATAATGCTTCCTCAAGTGTCTTTCTT TGGAATGAGTTATGAGCTCCATTACAAGAAACACTTGTTTAGCATCGAAATTTAGCATCGACCTTGCCACCGATGAAAAA TAGTGACAGCTAACGCCAGTCAAGCCGACACGTAGCACCAAAAATCAAATTCATTCCACATCATTGTACGTTAACTCAGT TTGGTCAATGTTAATGTCACCGGCCG
CDS sequence (LotjaGi3g1v0220600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTATGTACTATGCCTTTCTGGCATGTTCGGCACAAAGTACATCAAGAAGCTTTTTGTGTGTGTGCTGCTATATATC TATAAAGTTGAAGCTGGAGGCCAAGAAAAAGAGGAGTGACACAGAGAATATGGGTGGAGTTGCATGGACAGAAGAAGAAG ACCACCTTCTTAAGAAATGCATAGAACAATATGGAGAAGGAAAGTGGCATCGCATTCCTCACTTGGCTGGTTTAAACAGG TGCAGGAAGAGCTGTAGGCTAAGATGGTTGAACTATCTCCGTCCCAACATCAGAAGAGGAAATTTTACTGACGAAGAAGT GGATATGATTGTCAAACTCCACAAACTATTGGGCAACAGGTGGTCACTTATTGCTGGAAGGCTAGCAGGAAGGACAGCCA ATGATGTGAAGAACTACTGGAACTGCCATCTGAGTAAGAAATTGAATGCTCAAGTAGTTGATCAAGAGAAACACATGGTC ACAAACATTGATGTTATTAAGCCCCAGCCTGCAGGGAACGTCATTATTGGTACAAGCTCAATTAGTAGCAAAAGGAGCCA GCTGGGAGAGTTATCTCCAAGTCCCCCACCAGCAGCACCACACCACCAGAGTACTGGCATAATTTTTTCACCAACTTTTG ATGGTGGTCATGGACAGAGCCAGATGCTTGAATTAGAGGAAGATCATAACATCTGTTCTTACTTGGACCAACAGGGCCTT GTTGGTATGCTGCCAATGGAGCTTCAATTTGATGAAGTGAAAGCAATGAGTAATGGACAGAATAGTAGCAGCCAGTGGGA TTGGGATGAGATGCTCTTTGACATGGACCTGTATAATGATTCTTCTTTTAGATTCTTCTAG
Protein sequence (LotjaGi3g1v0220600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTMYYAFLACSAQSTSRSFLCVCCYISIKLKLEAKKKRSDTENMGGVAWTEEEDHLLKKCIEQYGEGKWHRIPHLAGLNR CRKSCRLRWLNYLRPNIRRGNFTDEEVDMIVKLHKLLGNRWSLIAGRLAGRTANDVKNYWNCHLSKKLNAQVVDQEKHMV TNIDVIKPQPAGNVIIGTSSISSKRSQLGELSPSPPPAAPHHQSTGIIFSPTFDGGHGQSQMLELEEDHNICSYLDQQGL VGMLPMELQFDEVKAMSNGQNSSSQWDWDEMLFDMDLYNDSSFRFF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| Phobius | 1 | 18 | 18 | - | – | |
| Phobius | 6 | 13 | 8 | - | – | |
| Phobius | 14 | 18 | 5 | - | – | |
| Phobius | 19 | 286 | 268 | - | – | |
| Gene3D | 38 | 98 | 61 | 2.6E-17 | – | |
| ProSiteProfiles | 41 | 93 | 53 | 17.113 | ||
| PANTHER | 44 | 278 | 235 | 1.9E-83 | – | |
| PANTHER | 44 | 278 | 235 | 1.9E-83 | ||
| SMART | 45 | 95 | 51 | 2.9E-14 | ||
| SUPERFAMILY | 47 | 140 | 94 | 1.54E-27 | ||
| CDD | 48 | 93 | 46 | 3.93939E-12 | ||
| Pfam | 48 | 93 | 46 | 1.5E-16 | ||
| ProSiteProfiles | 94 | 148 | 55 | 24.403 | ||
| SMART | 98 | 146 | 49 | 6.8E-15 | ||
| Pfam | 99 | 141 | 43 | 3.6E-12 | ||
| Gene3D | 100 | 164 | 65 | 6.1E-18 | – | |
| CDD | 101 | 144 | 44 | 8.23052E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi3g1v0220600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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