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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0232200 |
| Transcript ID | LotjaGi3g1v0232200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT5G48910.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910; TrEMBL-Plants: tr|V7D1E4|V7D1E4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0232200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:36596207..36598372) extracted from Lotus japonicus Gifu genome v1.2.
GAAAATGAATTCTCTTACATTGAAGCCCAAAGCAATACCTTCTCATCCACAGCTTCTCGTCCCAGAAATCAGAACATGCA AAACCATTCGAGAATTGAAGCAAGTTCATGCCTTCCTTATCAAAACAGCTCGAACACGTGATATCACAGTGGCAACTGAG CTCCTCAAGCTCTGTGCAACCTCTGATTTTCGTGACCCCGGTTACGCCCTCTCAGTGTTCGACCAAATGCCTGAACCAAA TTGCTTTGCTTGGAACACTGTGATAAGGGCACTTGCTGAAGAAAGCAATGCTGATGGATCCTTAAATGCCATGTTGCTGT TCAGTCGAATGTTGTATGATGGAATGGCGGAGCCTAATAGGTTCACCTTCCCTTCTGTGTTGAAGGCTTGCTCGGTTGCG GCAAGGTTGGAAGAAGGGAAGCAGGTTCATGGTTTGGTTGTTAAGTTCGGATTGGATGATGATGAGTTTGTTGTCAGTAA TCTGCTGAGGATGTATGTGTTGTGTGGGAGTGTGGAGGATGCCCATGTTTTGTTTTCCAGGAATGTTGGTGGTGTTGATG ATATGAGTAGAGTTGTAACAGATAAGAGGAGGCAAGAGGCTAATGTGGTTCTATGCAATGTGATGGTTGATGGGTATGTG AGAGTTGGGAACCTTAAGGCTGCTAGGGAACTGTTTCACAGAATGCAGCAGAGAAGTGTGGTTTCTTGGAACGTGATGAT TTCTGGCTATGCTCAAAATGGGTTTTTCATGGAGGCCATAGAGATGTTTCATAAGATGCAGATGGGACATTTGTCGCCGA ACCGGGTGACTTTGGTCAGCGTGCTGCCTGCAATTTCACGCCTTGGAGCACTCGAGTTGGGGAAATGGGTGCATTTGTAC GCGGAGAAGAACAAGATTCGGATTGATGATGTGCTTGGCTCTGCTCTTGTGGATATGTATGCCAAGTGTGGAAGCATTAA GAAGGCAATTCAGGTCTTTGAGAAGCTTCCTAGAAATAATGTTATAACTTGGAATGCGATCATAGGTGGTCTTGCCATGC ATGGTAAAGCCAACGATGTGTTTGATTACTTTTTAAGGATGGAAAGAAGTGGAGTATCCCCTAGCGATGTTACATACATA GCCATCTTGAGTGCATGTAGCCATGCAGGTTTAGTGGACAAGGGAAGATCATTTTTCAGTGAAATGATCATTGTGGCTGG ATTAGAGCCTAGAATAGAACACTATGGTTGCATGGTTGACCTCCTGGGTCGCGCTGGTTATCTCAAAGAAGCTGAGGATC TTATATTGAACATGCCAATAAGATCGGATGATGTCATATGGAAGGCCTTGCTTGGTGCTTGTAAGATGCATAAAAATATC GAAATCGGTAGGCGTGCAGCGGAGGTTTTGATGAAATTGGCACCTCATGACAGTGGGGCATATGTGGCTCTCTCCAACAT GTATGCCTCATCAGGGGATTGGGATGCAGTTGCAGAGGTGAGGTTGATGATGAGAGGCTTAGACATAAGGAAAGACCCTG GATGTAGTTGGATTGAAATTGATGGTGTCATTCATGAGTTTCTTGTTGAAGATGATTCCCATCCTAGAGCCAAAGAAATA CTCTCAATGTTGAAGGAAATTTCGCACAAGTTGAGCTTGGAAGGTCACATGCCAGATACCACGCAAGTCTTTCTTAAGAT AGATGAGAAGAATAAGGAGAGTGTGCTGCACTACCACAGTGAGAAAATTGCAGTTGCGTTTGGCTTAATTAGCACATCCC CTAAGACACCAATTCAGATTGTGAAAAATTTGCGAATATGCGAGGATTGTCATTCTTCAATGAAATTAATCTCAAAAGTT TATGAGCGTCAGATAACTATTCGAGATAGGAAGCGATTTCACCATTTCGAGCATGGTTCATGTTCTTGTATGGACTACTG GTAGTTTTGAATTGAAGTCCTTGGCAACAGAGTTGCCTGTTGGTGGATGTAACTACTTTAGTATATACTATATTGTCCTA ACTCTCACTAACTTCCCTTGTCCTTAAAATAGAGCTTGAGTATTTATTAATTAATGTACAGCAAAAGGCATTGTTGTCAT TCTTTCTTCAGAACTGAAAATGTGTTTTTCTTTTGGCCCTACTGCACTAAGCCACTGCTGAGATTGACCTGTATATGTGA AATTCA
CDS sequence (LotjaGi3g1v0232200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATTCTCTTACATTGAAGCCCAAAGCAATACCTTCTCATCCACAGCTTCTCGTCCCAGAAATCAGAACATGCAAAAC CATTCGAGAATTGAAGCAAGTTCATGCCTTCCTTATCAAAACAGCTCGAACACGTGATATCACAGTGGCAACTGAGCTCC TCAAGCTCTGTGCAACCTCTGATTTTCGTGACCCCGGTTACGCCCTCTCAGTGTTCGACCAAATGCCTGAACCAAATTGC TTTGCTTGGAACACTGTGATAAGGGCACTTGCTGAAGAAAGCAATGCTGATGGATCCTTAAATGCCATGTTGCTGTTCAG TCGAATGTTGTATGATGGAATGGCGGAGCCTAATAGGTTCACCTTCCCTTCTGTGTTGAAGGCTTGCTCGGTTGCGGCAA GGTTGGAAGAAGGGAAGCAGGTTCATGGTTTGGTTGTTAAGTTCGGATTGGATGATGATGAGTTTGTTGTCAGTAATCTG CTGAGGATGTATGTGTTGTGTGGGAGTGTGGAGGATGCCCATGTTTTGTTTTCCAGGAATGTTGGTGGTGTTGATGATAT GAGTAGAGTTGTAACAGATAAGAGGAGGCAAGAGGCTAATGTGGTTCTATGCAATGTGATGGTTGATGGGTATGTGAGAG TTGGGAACCTTAAGGCTGCTAGGGAACTGTTTCACAGAATGCAGCAGAGAAGTGTGGTTTCTTGGAACGTGATGATTTCT GGCTATGCTCAAAATGGGTTTTTCATGGAGGCCATAGAGATGTTTCATAAGATGCAGATGGGACATTTGTCGCCGAACCG GGTGACTTTGGTCAGCGTGCTGCCTGCAATTTCACGCCTTGGAGCACTCGAGTTGGGGAAATGGGTGCATTTGTACGCGG AGAAGAACAAGATTCGGATTGATGATGTGCTTGGCTCTGCTCTTGTGGATATGTATGCCAAGTGTGGAAGCATTAAGAAG GCAATTCAGGTCTTTGAGAAGCTTCCTAGAAATAATGTTATAACTTGGAATGCGATCATAGGTGGTCTTGCCATGCATGG TAAAGCCAACGATGTGTTTGATTACTTTTTAAGGATGGAAAGAAGTGGAGTATCCCCTAGCGATGTTACATACATAGCCA TCTTGAGTGCATGTAGCCATGCAGGTTTAGTGGACAAGGGAAGATCATTTTTCAGTGAAATGATCATTGTGGCTGGATTA GAGCCTAGAATAGAACACTATGGTTGCATGGTTGACCTCCTGGGTCGCGCTGGTTATCTCAAAGAAGCTGAGGATCTTAT ATTGAACATGCCAATAAGATCGGATGATGTCATATGGAAGGCCTTGCTTGGTGCTTGTAAGATGCATAAAAATATCGAAA TCGGTAGGCGTGCAGCGGAGGTTTTGATGAAATTGGCACCTCATGACAGTGGGGCATATGTGGCTCTCTCCAACATGTAT GCCTCATCAGGGGATTGGGATGCAGTTGCAGAGGTGAGGTTGATGATGAGAGGCTTAGACATAAGGAAAGACCCTGGATG TAGTTGGATTGAAATTGATGGTGTCATTCATGAGTTTCTTGTTGAAGATGATTCCCATCCTAGAGCCAAAGAAATACTCT CAATGTTGAAGGAAATTTCGCACAAGTTGAGCTTGGAAGGTCACATGCCAGATACCACGCAAGTCTTTCTTAAGATAGAT GAGAAGAATAAGGAGAGTGTGCTGCACTACCACAGTGAGAAAATTGCAGTTGCGTTTGGCTTAATTAGCACATCCCCTAA GACACCAATTCAGATTGTGAAAAATTTGCGAATATGCGAGGATTGTCATTCTTCAATGAAATTAATCTCAAAAGTTTATG AGCGTCAGATAACTATTCGAGATAGGAAGCGATTTCACCATTTCGAGCATGGTTCATGTTCTTGTATGGACTACTGGTAG
Protein sequence (LotjaGi3g1v0232200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNSLTLKPKAIPSHPQLLVPEIRTCKTIRELKQVHAFLIKTARTRDITVATELLKLCATSDFRDPGYALSVFDQMPEPNC FAWNTVIRALAEESNADGSLNAMLLFSRMLYDGMAEPNRFTFPSVLKACSVAARLEEGKQVHGLVVKFGLDDDEFVVSNL LRMYVLCGSVEDAHVLFSRNVGGVDDMSRVVTDKRRQEANVVLCNVMVDGYVRVGNLKAARELFHRMQQRSVVSWNVMIS GYAQNGFFMEAIEMFHKMQMGHLSPNRVTLVSVLPAISRLGALELGKWVHLYAEKNKIRIDDVLGSALVDMYAKCGSIKK AIQVFEKLPRNNVITWNAIIGGLAMHGKANDVFDYFLRMERSGVSPSDVTYIAILSACSHAGLVDKGRSFFSEMIIVAGL EPRIEHYGCMVDLLGRAGYLKEAEDLILNMPIRSDDVIWKALLGACKMHKNIEIGRRAAEVLMKLAPHDSGAYVALSNMY ASSGDWDAVAEVRLMMRGLDIRKDPGCSWIEIDGVIHEFLVEDDSHPRAKEILSMLKEISHKLSLEGHMPDTTQVFLKID EKNKESVLHYHSEKIAVAFGLISTSPKTPIQIVKNLRICEDCHSSMKLISKVYERQITIRDRKRFHHFEHGSCSCMDYW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 22 | 180 | 159 | 7.7E-16 | ||
| PANTHER | 24 | 141 | 118 | 3.9E-102 | – | |
| ProSiteProfiles | 79 | 116 | 38 | 7.224 | ||
| ProSiteProfiles | 118 | 152 | 35 | 7.202 | ||
| PANTHER | 135 | 227 | 93 | 3.9E-102 | – | |
| ProSiteProfiles | 153 | 183 | 31 | 5.294 | ||
| Gene3D | 181 | 296 | 116 | 1.6E-21 | ||
| Pfam | 198 | 230 | 33 | 0.011 | ||
| ProSiteProfiles | 200 | 230 | 31 | 10.205 | ||
| TIGRFAM | 202 | 233 | 32 | 7.5E-7 | ||
| ProSiteProfiles | 231 | 265 | 35 | 11.74 | ||
| Pfam | 231 | 274 | 44 | 1.2E-9 | ||
| PANTHER | 232 | 287 | 56 | 3.9E-102 | – | |
| TIGRFAM | 233 | 266 | 34 | 6.3E-8 | ||
| ProSiteProfiles | 266 | 300 | 35 | 5.261 | ||
| PANTHER | 283 | 496 | 214 | 3.9E-102 | – | |
| ProSiteProfiles | 301 | 331 | 31 | 7.881 | ||
| Gene3D | 305 | 538 | 234 | 2.2E-39 | ||
| Pfam | 332 | 379 | 48 | 1.2E-10 | ||
| ProSiteProfiles | 332 | 366 | 35 | 11.498 | ||
| TIGRFAM | 334 | 367 | 34 | 1.6E-6 | ||
| ProSiteProfiles | 367 | 402 | 36 | 9.01 | ||
| TIGRFAM | 369 | 402 | 34 | 2.5E-4 | ||
| ProSiteProfiles | 403 | 433 | 31 | 6.423 | ||
| Pfam | 406 | 430 | 25 | 0.073 | ||
| ProSiteProfiles | 469 | 503 | 35 | 7.322 | ||
| Pfam | 505 | 629 | 125 | 1.5E-37 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi3g1v0232200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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