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LotjaGi3g1v0234800.1

Overview

Field Value
Gene ID LotjaGi3g1v0234800
Transcript ID LotjaGi3g1v0234800.1
Lotus japonicus genome version Gifu v1.2
Description Disease resistance protein (TIR-NBS-LRR class), putative; TAIR: AT5G17680.1 disease resistance protein (TIR-NBS-LRR class); Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|G7IM52|G7IM52_MEDTR Disease resistance protein (TIR-NBS-LRR class), putative; Found in the gene: LotjaGi3g1v0234800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:37219943..37225328) extracted from Lotus japonicus Gifu genome v1.2.

CAACCTTTTTCCTCAGCTTTGCATGTGGAGCCAAAAGTGGTTGACGTCCCATGTTAGTGCGCACAATTATATGAACTTGG TGATGTATCATCAATCAAGCTATTCAATTTCATCGTCTCCCATCCCATCATTGAGAACCATAGGTTCTTCTGGTGAATCA ACCAAGGAATAGAGAGAAGATGGACACAAAACATTCAAGTGAGAGAACTTGTGCCTTGCTGGTCGGAGATACAGTTTCCA TGGATTCTAACTGCTCATCATCTTCTGGCAGGTACTATAAACATGATGTGTTCCTCAGTTTTAAAGGTGCTGACACCCGC AACACTTTTGTGGACCATCTTTACACTCATCTCACCAGAAAAGGCATTTTCACCTTCCAGGATGACACAAGTCTCCGGAA AGGAAAAGCCATTTCACCACAACTCGTGCAAGCCATTAAAGACTCGCGGGTTTCTATCGTTATCTTCTCTAAAGACTATG CTAAGTCTACATGGTGTTTGGATGAGATGGCCACTATTGCTGATTGCAGTAAAGAATTGAAACAAACCGTTTTCCCTGTT TTCTATGATGTCGACCCATCTCATTTACGAAAGCAAGATGGGGTGTGCCATATTGCCTTTGCTTCACACTTTAGGAAGTT CAAAGATGATCCGGGCAAGGTTTACCGGTGGCAGAGAGCTATGACAAGTTTGGCTAGTTCAGCTGGTTGGGATGTCAGGA ACAAGTAAGTATTATAATAGCAGGTTAGTGTCAGCTTCTCTTTCATCATAATCAATTTTGGAGCCCAGAAATTGCTGATA AAAGCTTCTTTCCATAATTGATTTTGGTTTTTAAGATAATCGTAGAAGGATACTTGTTACTGAAGTTACATCAATCAGTG ATCTTATTTTGCGTTTGTCTTTCAGGCCAGAGTTTGGAGAGATTGAAAAAATTGTTCAGGCAGTGTTAAGAGCATTGGAT CATAAATTTTCTAGTTTTACTAATGATCTGATTGGGATACAGCCTCATGTGAAAGAATTAGAAGACCTTCTAAAATTGAG TTCAGAGCATGATGATGATATTCGAGTCTTAGGGATTTGGGGGATGGGTGGAATAGGAAAGACCACTCATGCTACTGTCT TGTATGACAGAATTTCTCATCAATTTGATGCTCCTTGTTTTGTTGAGAACGTGAGCAAACTTTATAGGGATGGTGGTGCT ATTGCTGTACAGAAACAAATTCTTCGGCAAACTCTAGAAGAGAAAAATCTAGACACTTGCAGTACTTGTGAAATATCCAG AATTATAACAAATAGGCTACACAGCACTGTTAAGATCCTTGTAGTTCTCGACAATGTTGATCAGTTAGAGCAATTGCAAG AGTTGGCTATAAATCCTAAATTGCTTTGTGCTGGAAGTAGAATAATCATAACTACTAGGGATGAGCATATTCTGAGAGTA TATGGAGCTGATAAAGTTCACCAGGTTACACTATTGAATAATAATGATGCTCGTGAACTTTTTTGTAGAAGGGCCTTCAA AAGTGAAGACCAAAGTAGTACTTGTATGGAGTTGATTCCTGATGTACTAAAATATGCTCAATGTCTTCCATTAGCTATTA GAGTAATAGGTTCTTTCTTGTGCACCCGAGACGCTATCCAGTGGAGAGATGCCTTGGATAGATTGGAGAATAGTCCACAC AAGGAAATTATGGATGTGCTCCAGATAAGTGTTGATGGACTACAACACGAGGAGAAAGAAATGTTTCTGCACATTGCTTG TTTCTTCAAAGGGGAAAGGGTGGATTATGTAAAGCGAATTTTAGATGCTTGTGGATTACACCCTCACATTGGAATACAAA GTTTGATTGAAAAATCACTCATAACCATTAGAAACCAAGAAATTCATATGCATGAAATGTTACAAGAATTGGGGAAGAAA ATTGTTCGGCACCAATGTCCCAGACAGCCTGGATCGTGGAGTAGACTGTGGCTTTACAAAGATTTCTACAATGTCTTGGA GACAGAAACGGTAATCAGTTATATTTTTCAAAATCAGTTGTTGTTGGCTAATGTTAATATTAGTTCTTAGAACAAAAAGT GCATAACATGTGTCTTCTAGTTCTTAATTTCCAGGGAACAGACAATGTTGAAGGCATAGTGCTAGACCAAAAAGAAAATG TCTCTAAATGCAAGGCCGAAGGATTGTCAAAAATGAAGAGTCTTAGATTGCTGATATTATATCATAGGAATTTTTCAGGA AGACTCACTTTCCTTTCTAACAATTTAGAATACCTTTTGTGGCATGATTACCCTTTTCTTATTCTGCCATCAACATTTGA GCCATATTATCTTGTGGAATTGAATATGCCTCATAGTAGCATCCAACGACTTTGGAAGGGCACCAAGGTACTTTAATGGA TTTTCCTAAATATGATATTTCCTTGTTAATATAAGCAAAGCTTTTTAAAAGTTGTCTTTGCTTTTAGTTTTAATATAACA TGGTGAAATGTTGATGGTTAATTCTATCTTTACAGCACCTCCCCTGTCTGAGAAGGGTGGATATGAGCAACTCTAAGTAT CTTTTGGAGACTCCAAGTTTTGAAGGGATTCCAAATCTTGAGCGGTTAGATCTTACAGGATGCACAAACTTATTACATGT CCATCCATCCATTGGAGTTCTTACAAAACTTGCTTTCTTGAGTTTGAGAAACTGTAGAAGTTTAATCAGCCTTGATTTTG GTGATGGATCTAATCTATGTTCTCTAAAAGTGTTACACCTATCTGGTTGCACAAAACTTAAACACACCCCATATTTTACT GGCATCTCAAATCTGGAGTACCTTGATATGGATCAATGCAGAAGTTTATATGTGGTTCATGAATCAATTGGGGCTCTTGT GAAACTTAGACTCTTGAGTTTGAGAGATTGCACAAATCTTGTGACTATACCCAGCAGTGTTAATACCATGACATCTCTCA TAACTCTAGATCTATGTGGCTGCTGTAAACTTATGAACATGCCCTTGAGATGGATTTCCAACCCTTCTTTTCAACTGAGG TCTTTGATTTGTTTGAACCTGAGTTTTTGCAATCTTCCCAATGTCTCTGATGCTATTGGAGAGTTAAGGTGTTTAGAAAG ACTAAATCTACAAGGAAACAATTTTGTTTCACTACCACCTACCACTCAAAGGCTTTCTAGTCTAGCATATTTAAACTTGG CCCATTGCCATAAGCTTGAATGTTTGCCATGGCTACCACCAGAAAGTGCTTCATCGGTAGGAAAATATTTTAAAACAGAA TCCGGATCTCGTGATCATAGGTCAGGATTATACATTTTTGACTGCCCCAAGGTTGTCTATAATGATCTGCTATACTTCAA CTTTGAATTGCAATGGCCCTTAAGGCTAGTTACGGTGTGTGCTTTTCATATCTTAATCTTACCTCTCTAGTCTTAATTTG TTAGTCACTTTTTCTCTTGCTTTTTTCCCTATGATATTACTTGTATCTCACTAGGTTCTAAATCCAACATATTTTTAATT GTTGGATTGCCATGAGCTTAACAAGTCTCCTAGTTTCCCATTAGATACTTTTCATAAGTAAAAAAGTAACAACTCCCTTA ATATTCATCTATTCAGAACAAAAAGAAAACACATACATCAAGAAATACAATTAATTTATTTGAATTATTTTTAAACTCTC TTTGACTTTTTAACTACTTCTTAATAAACAACTTTTACAGCACTTGTATATTACTAGCATTACACAATGGTATAATTGAT GAAAGACTTAAACTAAACTTTTAGTCCTCTAGTTTTCACTATGATTTTGGAAGTCCTTGTACTTTAAGAAATAAGAAAAT TTGGTCATTTTGTCAATTTTTACATGCAAAAAATTCTTAAATATTCATTTTCTATTCAAATATTTTGGTAAGATGGATTG AGAAAAGAATACAAATTAGAAAGTATGAAATTAAAAAGTTCAGTAAGGATTTTATTGGATGTAAGATTAGGGTTTAGAGA GGAGAACTTTTGGGATTTGTTTTGAAGTCTTGGATAAAATTTAGTTTGGTTTGTATAGGTTTTGAGTGGAAGAAGGTTGA CAATGATTTAATCAAATCAATTTGTAAAATTTCACCTAAATAATTAGAATCTGAGAGTTATAAGTAGAATAAGAGTTGTT AAGGGACTTAATTGTAAGAATTTTAAATATTGAGGGACTAAATTTGCTAAAAAAATCTATAGAAACCAAAATCACAGATT AGCTATATTAGATGGGCTAAAAGCGTAATTAATTTTTGATAAAATGATAATAAATGTCGAGCTACTATATGGACAGATAA ATAGGAAGAGACAGTATTTTAAATTATTATGTCAGTATAGTAAAATGCAAGGATTATGTATTTTTTATTGTCCTTATGGC CTTCCTTTGCACTCTCTCTAGCTCTAATGCACATACCTGTTTTCCATTTTCAGGAACCTCGTCACTTTCGGTGTGGCTTT GACATTGTTGTTCCCTGGAATAACGAAACAACACCAGTATGGTTCAATCATCAATTTGATGGGGGCTCAACAATAAGGAT AATGAACTCTAGTGTTGATGATAGCTGCATAGGCTTTGCCTTTTGTGTAGTATTTAAGAAGGTAAAAAGTGGTCCTTCGA TTGCTAGTAGTTCTTCACATGATCCATGTTCACCACAATTGCCACACCCTTTTTATCTTTCTTTTGAAAGTGACCATACC GAAGAACGTTTTGACATGGCACTTAATTTGGAACCAGAGAGTATTGATGGGAGAAAATATCTTTGGATAATCTATATATC TCGGCAACACTGCCACTTTTTGAAAACGGGAGCACACATCACATTTAAAGCCTACCCAAGTTTGATGATAAAGAAATGGG GGTTGAACATGCTAATTGCGAAAAATGGAGAGGCATTAGAAAGGAGATCTCCAAGACTATGTTCCAAGAGGCTTGCCATT GATAATGTAGAAAAAAGTAATAGCAACTTTGGGCCAAAAATCCAACTTCCATACAATTGGTTCATTTCTGAAGAAGATGA AGTAGAAAATGATCAAGCCGAGGGGAAAGAAAATAATCTCTCTAATCTGGGTCTTTGATAGGCCAACTACAGTGAAAGCA CACAACATGATCCCTAAGCCAAAACATTGTTAGAGGTTATGATGGAGTTGATGTTACTATTGTTTTCCTAGGGCAAAACA TTCTTTTGCATTTTATGAAGTTTTTTTTTTATCTCGACACATCACAAGAAATTACAGAAACTTGAAAGCTTGTACAAAGT GCTCTGGATTGGTTATAAGGTAATTCCATGCTCAGTTACTTACCCATTATATTTTATTTTTTTATTATATGAGAGGGCGA GCTTCGGCACAACGATAAAGTTTGCT
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0234800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCAGGAACAAGTAAGTATTATAATAGCAGGCCAGAGTTTGGAGAGATTGAAAAAATTGTTCAGGCAGTGTTAAGAGC ATTGGATCATAAATTTTCTAGTTTTACTAATGATCTGATTGGGATACAGCCTCATGTGAAAGAATTAGAAGACCTTCTAA AATTGAGTTCAGAGCATGATGATGATATTCGAGTCTTAGGGATTTGGGGGATGGGTGGAATAGGAAAGACCACTCATGCT ACTGTCTTGTATGACAGAATTTCTCATCAATTTGATGCTCCTTGTTTTGTTGAGAACGTGAGCAAACTTTATAGGGATGG TGGTGCTATTGCTGTACAGAAACAAATTCTTCGGCAAACTCTAGAAGAGAAAAATCTAGACACTTGCAGTACTTGTGAAA TATCCAGAATTATAACAAATAGGCTACACAGCACTGTTAAGATCCTTGTAGTTCTCGACAATGTTGATCAGTTAGAGCAA TTGCAAGAGTTGGCTATAAATCCTAAATTGCTTTGTGCTGGAAGTAGAATAATCATAACTACTAGGGATGAGCATATTCT GAGAGTATATGGAGCTGATAAAGTTCACCAGGTTACACTATTGAATAATAATGATGCTCGTGAACTTTTTTGTAGAAGGG CCTTCAAAAGTGAAGACCAAAGTAGTACTTGTATGGAGTTGATTCCTGATGTACTAAAATATGCTCAATGTCTTCCATTA GCTATTAGAGTAATAGGTTCTTTCTTGTGCACCCGAGACGCTATCCAGTGGAGAGATGCCTTGGATAGATTGGAGAATAG TCCACACAAGGAAATTATGGATGTGCTCCAGATAAGTGTTGATGGACTACAACACGAGGAGAAAGAAATGTTTCTGCACA TTGCTTGTTTCTTCAAAGGGGAAAGGGTGGATTATGTAAAGCGAATTTTAGATGCTTGTGGATTACACCCTCACATTGGA ATACAAAGTTTGATTGAAAAATCACTCATAACCATTAGAAACCAAGAAATTCATATGCATGAAATGTTACAAGAATTGGG GAAGAAAATTGTTCGGCACCAATGTCCCAGACAGCCTGGATCGTGGAGTAGACTGTGGCTTTACAAAGATTTCTACAATG TCTTGGAGACAGAAACGGGAACAGACAATGTTGAAGGCATAGTGCTAGACCAAAAAGAAAATGTCTCTAAATGCAAGGCC GAAGGATTGTCAAAAATGAAGAGTCTTAGATTGCTGATATTATATCATAGGAATTTTTCAGGAAGACTCACTTTCCTTTC TAACAATTTAGAATACCTTTTGTGGCATGATTACCCTTTTCTTATTCTGCCATCAACATTTGAGCCATATTATCTTGTGG AATTGAATATGCCTCATAGTAGCATCCAACGACTTTGGAAGGGCACCAAGCACCTCCCCTGTCTGAGAAGGGTGGATATG AGCAACTCTAAGTATCTTTTGGAGACTCCAAGTTTTGAAGGGATTCCAAATCTTGAGCGGTTAGATCTTACAGGATGCAC AAACTTATTACATGTCCATCCATCCATTGGAGTTCTTACAAAACTTGCTTTCTTGAGTTTGAGAAACTGTAGAAGTTTAA TCAGCCTTGATTTTGGTGATGGATCTAATCTATGTTCTCTAAAAGTGTTACACCTATCTGGTTGCACAAAACTTAAACAC ACCCCATATTTTACTGGCATCTCAAATCTGGAGTACCTTGATATGGATCAATGCAGAAGTTTATATGTGGTTCATGAATC AATTGGGGCTCTTGTGAAACTTAGACTCTTGAGTTTGAGAGATTGCACAAATCTTGTGACTATACCCAGCAGTGTTAATA CCATGACATCTCTCATAACTCTAGATCTATGTGGCTGCTGTAAACTTATGAACATGCCCTTGAGATGGATTTCCAACCCT TCTTTTCAACTGAGGTCTTTGATTTGTTTGAACCTGAGTTTTTGCAATCTTCCCAATGTCTCTGATGCTATTGGAGAGTT AAGGTGTTTAGAAAGACTAAATCTACAAGGAAACAATTTTGTTTCACTACCACCTACCACTCAAAGGCTTTCTAGTCTAG CATATTTAAACTTGGCCCATTGCCATAAGCTTGAATGTTTGCCATGGCTACCACCAGAAAGTGCTTCATCGGTAGGAAAA TATTTTAAAACAGAATCCGGATCTCGTGATCATAGGTCAGGATTATACATTTTTGACTGCCCCAAGGTTGTCTATAATGA TCTGCTATACTTCAACTTTGAATTGCAATGGCCCTTAAGGCTAGTTACGGAACCTCGTCACTTTCGGTGTGGCTTTGACA TTGTTGTTCCCTGGAATAACGAAACAACACCAGTATGGTTCAATCATCAATTTGATGGGGGCTCAACAATAAGGATAATG AACTCTAGTGTTGATGATAGCTGCATAGGCTTTGCCTTTTGTGTAGTATTTAAGAAGGTAAAAAGTGGTCCTTCGATTGC TAGTAGTTCTTCACATGATCCATGTTCACCACAATTGCCACACCCTTTTTATCTTTCTTTTGAAAGTGACCATACCGAAG AACGTTTTGACATGGCACTTAATTTGGAACCAGAGAGTATTGATGGGAGAAAATATCTTTGGATAATCTATATATCTCGG CAACACTGCCACTTTTTGAAAACGGGAGCACACATCACATTTAAAGCCTACCCAAGTTTGATGATAAAGAAATGGGGGTT GAACATGCTAATTGCGAAAAATGGAGAGGCATTAGAAAGGAGATCTCCAAGACTATGTTCCAAGAGGCTTGCCATTGATA ATGTAGAAAAAAGTAATAGCAACTTTGGGCCAAAAATCCAACTTCCATACAATTGGTTCATTTCTGAAGAAGATGAAGTA GAAAATGATCAAGCCGAGGGGAAAGAAAATAATCTCTCTAATCTGGGTCTTTGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0234800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSGTSKYYNSRPEFGEIEKIVQAVLRALDHKFSSFTNDLIGIQPHVKELEDLLKLSSEHDDDIRVLGIWGMGGIGKTTHA TVLYDRISHQFDAPCFVENVSKLYRDGGAIAVQKQILRQTLEEKNLDTCSTCEISRIITNRLHSTVKILVVLDNVDQLEQ LQELAINPKLLCAGSRIIITTRDEHILRVYGADKVHQVTLLNNNDARELFCRRAFKSEDQSSTCMELIPDVLKYAQCLPL AIRVIGSFLCTRDAIQWRDALDRLENSPHKEIMDVLQISVDGLQHEEKEMFLHIACFFKGERVDYVKRILDACGLHPHIG IQSLIEKSLITIRNQEIHMHEMLQELGKKIVRHQCPRQPGSWSRLWLYKDFYNVLETETGTDNVEGIVLDQKENVSKCKA EGLSKMKSLRLLILYHRNFSGRLTFLSNNLEYLLWHDYPFLILPSTFEPYYLVELNMPHSSIQRLWKGTKHLPCLRRVDM SNSKYLLETPSFEGIPNLERLDLTGCTNLLHVHPSIGVLTKLAFLSLRNCRSLISLDFGDGSNLCSLKVLHLSGCTKLKH TPYFTGISNLEYLDMDQCRSLYVVHESIGALVKLRLLSLRDCTNLVTIPSSVNTMTSLITLDLCGCCKLMNMPLRWISNP SFQLRSLICLNLSFCNLPNVSDAIGELRCLERLNLQGNNFVSLPPTTQRLSSLAYLNLAHCHKLECLPWLPPESASSVGK YFKTESGSRDHRSGLYIFDCPKVVYNDLLYFNFELQWPLRLVTEPRHFRCGFDIVVPWNNETTPVWFNHQFDGGSTIRIM NSSVDDSCIGFAFCVVFKKVKSGPSIASSSSHDPCSPQLPHPFYLSFESDHTEERFDMALNLEPESIDGRKYLWIIYISR QHCHFLKTGAHITFKAYPSLMIKKWGLNMLIAKNGEALERRSPRLCSKRLAIDNVEKSNSNFGPKIQLPYNWFISEEDEV ENDQAEGKENNLSNLGL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11017:SF290
15 968 954 0.0 –
PANTHER
PTHR11017
15 968 954 0.0 –
Gene3D
G3DSA:3.40.50.300
26 197 172 7.8E-29 –
SUPERFAMILY
SSF52540
33 294 262 4.25E-55
IPR027417
Pfam
PF00931
54 278 225 8.1E-30
IPR002182
PRINTS
PR00364
65 80 16 2.8E-18 –
PRINTS
PR00364
142 156 15 2.8E-18 –
PRINTS
PR00364
235 249 15 2.8E-18 –
SUPERFAMILY
SSF52058
355 712 358 4.42E-44 –
Gene3D
G3DSA:3.80.10.10
388 566 179 8.0E-22
IPR032675
Pfam
PF07725
451 470 20 4.0E-7
IPR011713
PRINTS
PR00364
542 558 17 2.8E-18 –
Gene3D
G3DSA:3.80.10.10
576 715 140 2.0E-21
IPR032675

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0043531
Molecular function ADP binding Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0234800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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