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LotjaGi3g1v0240400.1

Overview

Field Value
Gene ID LotjaGi3g1v0240400
Transcript ID LotjaGi3g1v0240400.1
Lotus japonicus genome version Gifu v1.2
Description Myb family transcription factor family protein; TAIR: AT2G38300.1 myb-like HTH transcriptional regulator family protein; Swiss-Prot: sp|Q700D9|MYBF_ARATH Putative Myb family transcription factor At1g14600; TrEMBL-Plants: tr|A0A072VAU2|A0A072VAU2_MEDTR Myb-like DNA-binding domain, shaqkyf class protein; Found in the gene: LotjaGi3g1v0240400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:38907999..38913435) extracted from Lotus japonicus Gifu genome v1.2.

GAATTTTTAACGTTGGATGACTTCTGGTATTTTGAGCTTAATAATTTTCCTTACATTCCAACCAGAAGTCCCCACTCCCA CCCACTTGCTAGCAATGCACCCTCAACTTCTTACACAGGAAGGAACCTTACCACGCCACCCCAATATTCCCTCTCTCTTT GTTCTTAGGGTTTCTTCCATCTTCAACAGATATTAGATCCATGAACATGTATGGAAGGATTCAAACAGTGCTTTTCTTGC AACAGTTCTAGTACTCAACATGCTTGAATCACCCTCTTCTGCTTAAATCTTAGTCCACTGATCTCAAAGCTTATTCACGG GGGGTCTTCAAGGAAATTGGCTTTATTGGATCTTGGAAATTACAAGTTGAATCATCTCTGTGGTTAGTAGGAGCTAGTTG TCTTGGAAAGGAGTTAAAGGCTGGTAGTAAGCTTCATCATCATCACCAATGGTTTGCACAAAACTCCTCATCACCTCTCT CTTTCTCTCACCTTATGAACAATTCAAATATGTTTTTTGATCCTTTCCATTTAATTGGTTTTTAAATCATGATTTTTCCT GCTTTTGGATCTCATCTTGTTAAACCATCACTGTTTAAGCCATTACAAATTTCAAATTATAGGCATTTTTGGTCGGTGTA GAATTCCAAGACCTAGGAACAAGCACAAGTTTAATAAATTTACGGTACAATTGTAAGAAAGACAGAATCCTAAAACATCG TGTGTTTCAAAACCAATAGAACTAATTGAAATGCATTAATTTTGCTCACATATTTAACATACTAACACGATTTTAAATAA ATAACAAATTATTATGCATTTTCCGTATCTTCCTAACCTTCTCCCTATGATCTCTACCAGGAACACTATTATTAGAAGAA TTATCCAACAGAAATGGCTGAGACAATTTGCATATCTGATGAAGACAAGAGTGAAGGGAGCGTCGTTGTTCGAGCCAAAC CCCCTTCTCCAGGTCAAAGAAAACGTTCATTCTTGGACTTGAATGAAGAAGCTTTGGATGATGGAGATGATAACATGAGT GATGAGACCAGCAACAATGAGAATGAGATATCATCTCAAGAAGGTAACTTGAGTACTAGCAATAACTCCAGTGAAGAGCG TGGAACTACGGTGAGGCAATATGTACGGTCCAAAATGCCAAGGCTGCGTTGGACTCCTGATCTCCATTTATCTTTTGTCC GTGCTGTTGAGAGGCTTGGTGGCCAAGAAAGAGCCACACCCAAGTTGGTTCTCCAATTGATGAATGTGAGAGGACTTAGC ATTGCACATGTCAAGAGTCATTTGCAGGTAATTAATATCCATGTATAGAAATTCACATACAAGTGATACAACACTTATTT TGAGTGTTTAATTTTAATACTAGTTGAACTCAACATGAGCAAATTTTCATCACAATCTTCTTAAGAAGAGTTATGTTCAC TTTCTGTCTTAAAATGTATTTTGATGTTTGTTCGCACCGGTATATATATTGTAAAATTAGAACTAATTCCTTAATTTTTT TACATAATTTTTTAATTGCACCTTGTATTTATATATGTATAGATAAATTGTTAATTAAATTTTTGTGGAGTTTCAGATGT ATCGAAGTAAGAAGCTTGATGAGTCTGGCCAAGGTAAACATTCAGAACCTATTTAGCAAAACCATGTTTTGACCTCATTG CACGAGGCATGGCCTATTTCACGTTCCCAAGAACGTTTATATCACATGCATGAATAACATTAATGATACTGTGTTTTATT TCAGTTTTATCCCAAAATAGGGTCATGCAAGGAAGGAATCAAATGTTTGATATGTACGGAAGACTAATTAATGCCCAACA AGGATACTTTGGGGTTGACAACAATAAGAACTTTCTGCTGCAGCCATCATCTCTATTAGTGAAACAACCCTATGAAGAAA TCAAATCTCATGGCTCTTCAAGGTACAACCACCAAGTGATCGAAGAAATTAAGTGCATGTTTTGATATGTAGTGAAAATC CACAATGAAATTAAAATCACAGTTGACAGCCACAAAAACTAAGAAAATTTGCTTCTGTCTCACAACGATTTTAACTCCAA TCCTTGTGATTTTCTACTATATATTCCCATACATGCACTAAAATAGATTTGGAGAAAAAATTGATATTCCTTTTATGTTG TTCACTGTCTGTAGATTCAACACCACTGGGCTTTTCAATAGTCACATGATCATGACATCAAGTTCATCAGTGTGGGAAAA AGAGCCAAGTTCACATATATTTGATGTAAGGGATGCAATAACAAAAAATGTGTCTCTTAGTTCTAGCCAAGTACAAGATA AGAAATGGCTTCTTCAGGGAATAGCTACATCACAAAGAAGTGATAGACACGAATCTATTATTAGCATATCTCAAGATGAC AAGTATAGTGCACAACCTTCTCCATGGAGCAACTTCTCTAGTTCTATCAATAATCAATATCAACGTAGTTCCTGCAGTAT CTTCAATGTTCATGCCCAGTTTGATGCTGAGGTAATAAAATTGCTACACTATAACTCCCAACTTTGTTACTTACAATAGA TAATTATAGATACTGTTTGTTTTGCTTAATTATGAAAATTAGGGTAAATTAAAAGGTTTTTTTCTTGGACAAATTTTTAA GTGGCTCATTTGGTTTCCAATGCAACTGGGCACTAATTTAACCCTTGAAATAGGAAAGTTAAAACCACAACACACTCTTA AAACAATGCATCATACAGATTCTTGATTTTCTCGTCTGCCTTCCATCCATAACATTTAGCATTATTGGAGAGATATCAGG CAAAAATTAGAGGTTTGCCTCGCCCTCCCAATCCCAATTTCAGTTTTATGATATAGAAAAAAAAAATTGGTGAAAAACAT TTTTTTTATAAGTTGGTGAAAGACATTTAACATGTTTTAAAAACTCCATACAAAAAAAAAACCATGTTTTAAAAACATGT AATATGCTTTTCAAAGCTGAAATAGTGTGATTTAAAAACTAAAAACAGAAATACTCTTGTAGAACATCTCTAAGAGAGTC TCTTTGATTATGTTCTTTTTTTGTTTTTCAGAACTATTCTATAAATTAATTTTGAAAACTGCTTTACAAATTAAAACAAA AATTTAATAAATTTTTTGGTAATACTAATTTAAAAATAATTTTAGAAATAAAAAGTAAAAAAAAAATTGAGTTGTTCCGG TTGAGAAAATCACATTTTTTGTAATATTATAATTTGTTTATTAATGAGAAAATCAAATAACATATTAAAAATATAAAAGT TAAGAATAATTTTTTTAGTTATTCTGGTTTTTTGTGTGTAAAAACTGAAAATAAGAATCAATTTTGAAAATTAATTAATG TAAAAACCTTAACCAAACATGTTTTTTTATTTTACAAAATAAAAAACTGTTTTAAAAACAGTAATCAAACAGACCTATTG GTTTTTCAATTTTTAAAAATTAAACTAAGAATTAATTTTAAGAACCGTTTTTTAAAACAATTTCTACCAAACAATTTCTT TTCTTATTATGTTTTAAAATATTGAAATCTGTTTTACAAAACACTAGTCAAACATGATTTTTCTATTTCTATTTTTTCTT TTCAAGTCACATGTTTGTCAACTTTAGAAAACTCTTTTCTTATTTTTAAATCAATTTTTAAATATTTTTTCCAGAAAATA CTTAAAAAGAAAATCAAACACTAGTGGGTTATTTGGCGAGGCTCATGTTTCTTATCTGCCATCACTACTCATTGCCTCTT TTGTTTTTGCTGCTCTTAACCGTGTTTCGTCCTTTAAAGTTGGGTCTGGATCCCATTTTGATCAATAGTGTCGTCGCTTC TCCTTCTTGTCCAAGGCCATGATTGGGCCGGGTCCTTAGTTTTTGTTTTTTTGTTTGTTTTCTTTTAGGGTTTGTATCTC AGAGCATCGGTTGGTTGGGTGTTTATTTGGGGTTTTTGGGCTAGTTTTGGTAGGATGTTTGTTGGTTTCTTAGCGGTTTT TGGGATACTTTTTGTTGTTGACTTTTGGTTGATCAAATTCATGTTTGTTAGCCTTTTAGTTGATCAAATTATTGTACCCA TGTTATTGGGAGGAGTTGTTTCTCCACATTTTCTTTTTTTTTTTAGAAAATCAAACAAACTCTAACTTTCAAGTGAACAT AGCGGTAAAGCACACTCTCTTAACATCTAACTTGACAAAATGAAAAATAAATATTGGTACAATTATAGGTGTACTGTAGT TTTGAGTTAAACTTAGACATATTTGATTTTAGTCCTAGAAAATACAAAATATCATGTGATTTTAGTTCCTTGTGATAAAA CCACATAATTTTTTCATTTTGTTAGGGGATTTGTCTATCGTACGTGGGCCAATAAAAATATAGTTCACAAGTTTAAATGA AACAGTAGTTAAATTTTGGAGCTACAATGTGAAGCTATATTAATTATCATAAAAAAAAATATAATTAATCTAATGATTTT ATTTTATATTTTTGGAATTGTAGGTTCATGATTTAAAAGATCGAATGCCAGGTTTCACAAAACAAGTTCAAGTATCGAAG CAAAGTCATGTTAAGTCCCAGTTAGAGAGGTTGAATGAGAAGAAAGGATCACCAAGTTTTCTAGAGCTAAAGCTAAGTCA AGAAACAGGAAATGTTAGAGACCAAGTGAATCCTCTCCCAGAAAATGAGCAGGAAATCAATACAATACTTTCACTATCAT TGTTCTCTTCGTCATCCTCAAATTCAAGGCAACAAGAACAATGTAGTGAAAAGCATAAAGACAATACTCAAATTGAGAGT ATGTGTTTACAAAATTGTGTGCCAATGAGTCGTTTGGGCTGAGTACTAAGGATCTGACCATGTCATATAGAGCATAGGAG TGAGATCTTTCAAGTACTTGCCTTAATGGACCACATATATGTATGCATGCACCTTTTCTTGGTTTTTCAAACAAAAGTAA TTTTAGCTGTTTGACTATTTATGTATGGTGGTCATCACATATGAATTAGATGAGATAGTCAATGTCATTTAATTTGAACA GTGGACCATTGACTTAATAGTAATTAAGTTCAAAGCCTGAAAGGTCCATTTTTTGTGTAGTCAATACTCAATAGTTTACT TCCACCCAAAAGGCAAGGAACTAATCTTCTAGCTAGTTCAACACTGATGAGGATTCTCATGTTGAAAACTTTCTCATATT TTCTCATATTGTTGGGGGAGTTGAGAAAATCAAAGTCTTAGAGGAGAATCTAAATGGAATTGTGAAAAAAGTAATTGTTG AGGGGCTATTGGAGTTCTTGATGGGAAAGAAGAAAGAAATTGCTAGAAAGTTTATGGAAAGAGTTCAGAGTGGAGGAGAT CAGGTGGTTACAAAAATTGAGATTAAGGTGACTAGAAACATAGGTTTTCATCAAAAGGCGTGCAAGGTCAAAAGGCT
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0240400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTGAGACAATTTGCATATCTGATGAAGACAAGAGTGAAGGGAGCGTCGTTGTTCGAGCCAAACCCCCTTCTCCAGG TCAAAGAAAACGTTCATTCTTGGACTTGAATGAAGAAGCTTTGGATGATGGAGATGATAACATGAGTGATGAGACCAGCA ACAATGAGAATGAGATATCATCTCAAGAAGGTAACTTGAGTACTAGCAATAACTCCAGTGAAGAGCGTGGAACTACGGTG AGGCAATATGTACGGTCCAAAATGCCAAGGCTGCGTTGGACTCCTGATCTCCATTTATCTTTTGTCCGTGCTGTTGAGAG GCTTGGTGGCCAAGAAAGAGCCACACCCAAGTTGGTTCTCCAATTGATGAATGTGAGAGGACTTAGCATTGCACATGTCA AGAGTCATTTGCAGATGTATCGAAGTAAGAAGCTTGATGAGTCTGGCCAAGTTTTATCCCAAAATAGGGTCATGCAAGGA AGGAATCAAATGTTTGATATGTACGGAAGACTAATTAATGCCCAACAAGGATACTTTGGGGTTGACAACAATAAGAACTT TCTGCTGCAGCCATCATCTCTATTAGTGAAACAACCCTATGAAGAAATCAAATCTCATGGCTCTTCAAGATTCAACACCA CTGGGCTTTTCAATAGTCACATGATCATGACATCAAGTTCATCAGTGTGGGAAAAAGAGCCAAGTTCACATATATTTGAT GTAAGGGATGCAATAACAAAAAATGTGTCTCTTAGTTCTAGCCAAGTACAAGATAAGAAATGGCTTCTTCAGGGAATAGC TACATCACAAAGAAGTGATAGACACGAATCTATTATTAGCATATCTCAAGATGACAAGTATAGTGCACAACCTTCTCCAT GGAGCAACTTCTCTAGTTCTATCAATAATCAATATCAACGTAGTTCCTGCAGTATCTTCAATGTTCATGCCCAGTTTGAT GCTGAGGTTCATGATTTAAAAGATCGAATGCCAGGTTTCACAAAACAAGTTCAAGTATCGAAGCAAAGTCATGTTAAGTC CCAGTTAGAGAGGTTGAATGAGAAGAAAGGATCACCAAGTTTTCTAGAGCTAAAGCTAAGTCAAGAAACAGGAAATGTTA GAGACCAAGTGAATCCTCTCCCAGAAAATGAGCAGGAAATCAATACAATACTTTCACTATCATTGTTCTCTTCGTCATCC TCAAATTCAAGGCAACAAGAACAATGTAGTGAAAAGCATAAAGACAATACTCAAATTGAGAGTATGTGTTTACAAAATTG TGTGCCAATGAGTCGTTTGGGCTGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0240400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAETICISDEDKSEGSVVVRAKPPSPGQRKRSFLDLNEEALDDGDDNMSDETSNNENEISSQEGNLSTSNNSSEERGTTV RQYVRSKMPRLRWTPDLHLSFVRAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDESGQVLSQNRVMQG RNQMFDMYGRLINAQQGYFGVDNNKNFLLQPSSLLVKQPYEEIKSHGSSRFNTTGLFNSHMIMTSSSSVWEKEPSSHIFD VRDAITKNVSLSSSQVQDKKWLLQGIATSQRSDRHESIISISQDDKYSAQPSPWSNFSSSINNQYQRSSCSIFNVHAQFD AEVHDLKDRMPGFTKQVQVSKQSHVKSQLERLNEKKGSPSFLELKLSQETGNVRDQVNPLPENEQEINTILSLSLFSSSS SNSRQQEQCSEKHKDNTQIESMCLQNCVPMSRLG
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 17 17 - –
MobiDBLite
mobidb-lite
1 79 79 - –
PANTHER
PTHR31314:SF65
46 419 374 3.7E-74 –
PANTHER
PTHR31314
46 419 374 3.7E-74 –
MobiDBLite
mobidb-lite
53 79 27 - –
Gene3D
G3DSA:1.10.10.60
85 145 61 1.5E-24 –
ProSiteProfiles
PS51294
85 145 61 11.564
IPR017930
SUPERFAMILY
SSF46689
87 143 57 3.05E-14
IPR009057
TIGRFAM
TIGR01557
89 144 56 2.1E-22
IPR006447
Pfam
PF00249
91 141 51 5.4E-7
IPR001005

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0240400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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