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LotjaGi3g1v0244100.6

Overview

Field Value
Gene ID LotjaGi3g1v0244100
Transcript ID LotjaGi3g1v0244100.6
Related isoforms 7
Lotus japonicus genome version Gifu v1.2
Description Alpha-1,3-mannosyltransferase, putative; TAIR: AT1G78800.1 UDP-Glycosyltransferase superfamily protein; Swiss-Prot: sp|Q7KWM5|ALG2_DICDI Alpha-1,3/1,6-mannosyltransferase ALG2; TrEMBL-Plants: tr|C6TI07|C6TI07_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0244100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:39800256..39803040) extracted from Lotus japonicus Gifu genome v1.2.

AACATGGCAAAGGGCACAAGCTCAGAGATGAACATTGCCATTATCCACCCTGATCTTGGCATAGGCAATAATTAACTGCC CTTTATTCTATTCGAATCAAAATCAAAAAAAATTCTGTGCCCATTAATTTTTTTCTTCCCTATACTTACAGTTGATTCTT ATTACCTTGTGATTGTTTTGCAGGTGGAGCTGAAAGATTGATCGTTGATGCAGCTGTTGAGCTTGCATCCCATGGTCATA ATGTTCATGTTTTTACTGCTCATCATGATCGAAATCGATGTTTTGAGGAAACTGTTGCTGGTGAATCTCTGTCTTTGTAT ATATATGTGTCTGTGATTGCCACATTTTGTGTTCTTTATAAGGAAATGCATTGTGTTAAGATATAGTTTGACTTGTAATT GTTTCAGGTACATTTCCTGTTACTGTCTATGGTTCCTTTCTTCCGCGGCATATATTCTACCGTCTTCATGCATTGTGTGC TTACCTTCGATGCCTATTTGTTGCTTTCTGTGTGCTTTTCATGTGGCCATCATTTGATGTTATACTGGCTGATCAGGTCT CTGTAGTCATTCCCATTTTGAAGCTTAAAAGGTCAACAAAGGTAGCTAGCAATAAGAATCATGTGTTGTAAATTCAAGTT TTGGCATTCACGGTTCGTCTTAGTTGCTTATTTTTCTTGCTAGGTTGTGTTCTACTGTCATTTTCCTGACTTGTTGCTGG CTCAGCATACAACTTTTGTTCGGAGGATGTATAGGAAACCCATAGACTATGTAGAAGAAATAACAACTGGTTGGACTTTG TATTCTTGCTTTATGTTTATTTATTTATTTCTGAACAAGGTTTTAAATTGTGGTCACATCACGGTTGCGTTGCGGTCCTT CATATTGTGATTAAACATGGCTGTTGCGTCCAAATCGCGGTCGGGCTCCAAAACCTTGATGTTGCGGACCTTGATTTAAA ACCATGTTTCTGAACTTCTTTTCTCACTTGTAATCAAGCATCTTATTAAGCATTGCTAAATTGCAGGAATGGCTGATTTG GTACTTGTCAACAGCAACTTCACTAAATCTACTTTTGCAAATACGTTTAAGCAACTAGATGCTAAAGGAATTCGACCAGC TGTTCTATACCCAGCAGTCAATGTGGATCAGTTCAATGAACCCACTTCCTTTAGGTAAATGACATGTTTGTAGATGTATG GTCAATACAAGATTATGCATGTAGCTTATTCTTATAACCAATTTTATTATAATTATGCTTCTGCTGTATTTTTTTTCCTG TTGTAGGCTGAATTTTCTTTCCATTAACCGCTTTGAGAGGAAGAAGAACATAGAGTTAGCAATTTCAGCTTTTTCTATGC TTTGCTCACCTAATGGACTTCTTAAAAATCAAGATACTACCGATGCTTCTTTGATTGTTGCAGGTCAGTATGTTTTTCTT ATGACTTCACATTTCTTAAGACAGATTGATAGATATTAGATGGTATGCTCATTATTAACTGTTCTGGGGATGTCTGTCAT GACTCATGATGTATGTGCCTTAGACTGGAGTTTGGTAAAGCAGTGTCTTAGTTATGTTTGGTTCTTAGTAATGTTTTAAA TTCTTGTATTATTTTTCAATCATTTCAAAAGACTTGTTTGTTCTGCGGAATCTTCTCAATAACACAGCTTGTTGGTAAAT TATCTTTGTGAAGCTTTCTTGGTTCAATCATTTCAATCAGATGCATTAGCTTGGATTTGTTGTTGTGTTTTACTTCGAAC CTTTATATAACTGACGTGGAAACTGCATGAAGTTTATTTTCTTATGTATTAAAAATGAGTTGTTAATTTTTATAAACCGT TATTTGGTGACAGAAAGTTCATTTATTGATCTTGTAAGTATAATGCTATATAGCCCATAGTATGAGGTGTTTAGTACATA GTTATATCTATATTGCCAATGTTATCATGAAGAAACTGATTGAGATGATGATGTTTTGTATCATGATAAGTTTTTGGTGC CAGTCAATTCATTAATCTAAAAATTAAAATATGAATGAGAAATTTATCTATCTCTACCATTTTGGTGTGTTAGTTTAGTT ATATTTAAAGGCCTTCTTGTTGCACTCAGCTTTGATTTATATATACATTTTCTTGGCAGTATAACTGGGTCCTAAGTTTG AAGTTTAACCAGCCATACTTATTATTTCAATTGAAGCATTAGGCGCAATTTGAGAGTATAAAATCTATTTTCATAAATTG TTCCAGGTGGTTTTGATAAGCGGTTGAAGGAGAGTGTGGAGTACTTGGAAGAGCTTAAAAATTTAGCTGAAAGGGAAGGG GTCTCTAACCAAATAAGATTCATCACATCTTGCACTACAGCTGAAAGGAACACTCTTCTTTCAGAATGCCTATGTGTACT TTACACGCCAAAGGTATGTGAAACCTTATTATGATTCCTGAAAATTGGTAGAAGTTGACTTAAGAGTTTTACATTAAGAT CTTCGATACAGGATGAACACTTTGGCATTGTTCCTATAGAGGCAATGGCAGCTTATAAACCTGTTATTGCGTGCAATAGT GGTGGCCCGGTGGAGTCAATCAAGAATGGTGAAACAGGATTCCTTTGCGATCCTACACCACAGAAGTTTGCTTCAGCAAT GGCTAGCCTCATAAATGATCCTCAGGGAGCAGAAAGAATGGGCAGAGAAGCTAGGAGGCATGTTGTTGAGTCATTCTCTA CAAAGACATTTGGCGAACGTTTAAATAGATATTTAGTTGACATTCACCGGGAGAAGGAGGATTGA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0244100.6) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCAAAGGGCACAAGCTCAGAGATGAACATTGCCATTATCCACCCTGATCTTGGCATAGGTGGAGCTGAAAGATTGAT CGTTGATGCAGCTGTTGAGCTTGCATCCCATGGTCATAATGTTCATGTTTTTACTGCTCATCATGATCGAAATCGATGTT TTGAGGAAACTGTTGCTGGTACATTTCCTGTTACTGTCTATGGTTCCTTTCTTCCGCGGCATATATTCTACCGTCTTCAT GCATTGTGTGCTTACCTTCGATGCCTATTTGTTGCTTTCTGTGTGCTTTTCATGTGGCCATCATTTGATGTTATACTGGC TGATCAGGTCTCTGTAGTCATTCCCATTTTGAAGCTTAAAAGGTCAACAAAGGTTGTGTTCTACTGTCATTTTCCTGACT TGTTGCTGGCTCAGCATACAACTTTTGTTCGGAGGATGTATAGGAAACCCATAGACTATGTAGAAGAAATAACAACTGGA ATGGCTGATTTGGTACTTGTCAACAGCAACTTCACTAAATCTACTTTTGCAAATACGTTTAAGCAACTAGATGCTAAAGG AATTCGACCAGCTGTTCTATACCCAGCAGTCAATGTGGATCAGTTCAATGAACCCACTTCCTTTAGGCTGAATTTTCTTT CCATTAACCGCTTTGAGAGGAAGAAGAACATAGAGTTAGCAATTTCAGCTTTTTCTATGCTTTGCTCACCTAATGGACTT CTTAAAAATCAAGATACTACCGATGCTTCTTTGATTGTTGCAGGTGGTTTTGATAAGCGGTTGAAGGAGAGTGTGGAGTA CTTGGAAGAGCTTAAAAATTTAGCTGAAAGGGAAGGGGTCTCTAACCAAATAAGATTCATCACATCTTGCACTACAGCTG AAAGGAACACTCTTCTTTCAGAATGCCTATGTGTACTTTACACGCCAAAGGATGAACACTTTGGCATTGTTCCTATAGAG GCAATGGCAGCTTATAAACCTGTTATTGCGTGCAATAGTGGTGGCCCGGTGGAGTCAATCAAGAATGGTGAAACAGGATT CCTTTGCGATCCTACACCACAGAAGTTTGCTTCAGCAATGGCTAGCCTCATAAATGATCCTCAGGGAGCAGAAAGAATGG GCAGAGAAGCTAGGAGGCATGTTGTTGAGTCATTCTCTACAAAGACATTTGGCGAACGTTTAAATAGATATTTAGTTGAC ATTCACCGGGAGAAGGAGGATTGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0244100.6) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAKGTSSEMNIAIIHPDLGIGGAERLIVDAAVELASHGHNVHVFTAHHDRNRCFEETVAGTFPVTVYGSFLPRHIFYRLH ALCAYLRCLFVAFCVLFMWPSFDVILADQVSVVIPILKLKRSTKVVFYCHFPDLLLAQHTTFVRRMYRKPIDYVEEITTG MADLVLVNSNFTKSTFANTFKQLDAKGIRPAVLYPAVNVDQFNEPTSFRLNFLSINRFERKKNIELAISAFSMLCSPNGL LKNQDTTDASLIVAGGFDKRLKESVEYLEELKNLAEREGVSNQIRFITSCTTAERNTLLSECLCVLYTPKDEHFGIVPIE AMAAYKPVIACNSGGPVESIKNGETGFLCDPTPQKFASAMASLINDPQGAERMGREARRHVVESFSTKTFGERLNRYLVD IHREKED
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
CYTOPLASMIC_DOMAIN
1 78 78 - –
PANTHER
PTHR45918:SF1
5 405 401 8.2E-193 –
PANTHER
PTHR45918
5 405 401 8.2E-193
IPR027054
CDD
cd03805
9 394 386 0.0 –
Gene3D
G3DSA:3.40.50.2000
9 204 196 9.2E-12 –
SUPERFAMILY
SSF53756
11 397 387 6.28E-68 –
Pfam
PF13439
20 200 181 3.0E-16
IPR028098
Phobius
TRANSMEMBRANE
79 99 21 - –
TMHMM
TMhelix
83 102 20 - –
Phobius
NON_CYTOPLASMIC_DOMAIN
100 407 308 - –
Gene3D
G3DSA:3.40.50.2000
205 385 181 8.0E-43 –
Pfam
PF00534
212 379 168 6.0E-37
IPR001296

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004378
Molecular function GDP-Man:Man1GlcNAc2-PP-Dol alpha-1,3-mannosyltransferase activity Catalysis of the reaction: beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-D-GlcNAc-diphosphodolichol + GDP-alpha-D-mannose = alpha-D-Man-(1->3)-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-D-GlcNAc-diphosphodolichol + GDP + H+. This reaction is the transfer of an alpha-D-mannosyl residue from GDP-mannose into lipid-linked oligosaccharide, forming an alpha-(1->3)-D-mannosyl-D-mannose linkage.
Subterm of
GO:0006486
Biological process Protein glycosylation A protein modification process that results in the addition of a carbohydrate or carbohydrate derivative unit to a protein amino acid, e.g. the addition of glycan chains to proteins.
Subterm of
Part of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0244100.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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