Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi3g1v0244100.8

Overview

Field Value
Gene ID LotjaGi3g1v0244100
Transcript ID LotjaGi3g1v0244100.8
Related isoforms 7
Lotus japonicus genome version Gifu v1.2
Description sucrose synthase 3; TAIR: AT1G78800.1 UDP-Glycosyltransferase superfamily protein; Swiss-Prot: sp|Q9H553|ALG2_HUMAN Alpha-1,3/1,6-mannosyltransferase ALG2; TrEMBL-Plants: tr|I1M2Z7|I1M2Z7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0244100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:39800259..39803040) extracted from Lotus japonicus Gifu genome v1.2.

ATGGCAAAGGGCACAAGCTCAGAGATGAACATTGCCATTATCCACCCTGATCTTGGCATAGGCAATAATTAACTGCCCTT TATTCTATTCGAATCAAAATCAAAAAAAATTCTGTGCCCATTAATTTTTTTCTTCCCTATACTTACAGTTGATTCTTATT ACCTTGTGATTGTTTTGCAGGTGGAGCTGAAAGATTGATCGTTGATGCAGCTGTTGAGCTTGCATCCCATGGTCATAATG TTCATGTTTTTACTGCTCATCATGATCGAAATCGATGTTTTGAGGAAACTGTTGCTGGTGAATCTCTGTCTTTGTATATA TATGTGTCTGTGATTGCCACATTTTGTGTTCTTTATAAGGAAATGCATTGTGTTAAGATATAGTTTGACTTGTAATTGTT TCAGGTACATTTCCTGTTACTGTCTATGGTTCCTTTCTTCCGCGGCATATATTCTACCGTCTTCATGCATTGTGTGCTTA CCTTCGATGCCTATTTGTTGCTTTCTGTGTGCTTTTCATGTGGCCATCATTTGATGTTATACTGGCTGATCAGGTCTCTG TAGTCATTCCCATTTTGAAGCTTAAAAGGTCAACAAAGGTAGCTAGCAATAAGAATCATGTGTTGTAAATTCAAGTTTTG GCATTCACGGTTCGTCTTAGTTGCTTATTTTTCTTGCTAGGTTGTGTTCTACTGTCATTTTCCTGACTTGTTGCTGGCTC AGCATACAACTTTTGTTCGGAGGATGTATAGGAAACCCATAGACTATGTAGAAGAAATAACAACTGGTTGGACTTTGTAT TCTTGCTTTATGTTTATTTATTTATTTCTGAACAAGGTTTTAAATTGTGGTCACATCACGGTTGCGTTGCGGTCCTTCAT ATTGTGATTAAACATGGCTGTTGCGTCCAAATCGCGGTCGGGCTCCAAAACCTTGATGTTGCGGACCTTGATTTAAAACC ATGTTTCTGAACTTCTTTTCTCACTTGTAATCAAGCATCTTATTAAGCATTGCTAAATTGCAGGAATGGCTGATTTGGTA CTTGTCAACAGCAACTTCACTAAATCTACTTTTGCAAATACGTTTAAGCAACTAGATGCTAAAGGAATTCGACCAGCTGT TCTATACCCAGCAGTCAATGTGGATCAGTTCAATGAACCCACTTCCTTTAGGTAAATGACATGTTTGTAGATGTATGGTC AATACAAGATTATGCATGTAGCTTATTCTTATAACCAATTTTATTATAATTATGCTTCTGCTGTATTTTTTTTCCTGTTG TAGGCTGAATTTTCTTTCCATTAACCGCTTTGAGAGGAAGAAGAACATAGAGTTAGCAATTTCAGCTTTTTCTATGCTTT GCTCACCTAATGGACTTCTTAAAAATCAAGATACTACCGATGCTTCTTTGATTGTTGCAGGTCAGTATGTTTTTCTTATG ACTTCACATTTCTTAAGACAGATTGATAGATATTAGATGGTATGCTCATTATTAACTGTTCTGGGGATGTCTGTCATGAC TCATGATGTATGTGCCTTAGACTGGAGTTTGGTAAAGCAGTGTCTTAGTTATGTTTGGTTCTTAGTAATGTTTTAAATTC TTGTATTATTTTTCAATCATTTCAAAAGACTTGTTTGTTCTGCGGAATCTTCTCAATAACACAGCTTGTTGGTAAATTAT CTTTGTGAAGCTTTCTTGGTTCAATCATTTCAATCAGATGCATTAGCTTGGATTTGTTGTTGTGTTTTACTTCGAACCTT TATATAACTGACGTGGAAACTGCATGAAGTTTATTTTCTTATGTATTAAAAATGAGTTGTTAATTTTTATAAACCGTTAT TTGGTGACAGAAAGTTCATTTATTGATCTTGTAAGTATAATGCTATATAGCCCATAGTATGAGGTGTTTAGTACATAGTT ATATCTATATTGCCAATGTTATCATGAAGAAACTGATTGAGATGATGATGTTTTGTATCATGATAAGTTTTTGGTGCCAG TCAATTCATTAATCTAAAAATTAAAATATGAATGAGAAATTTATCTATCTCTACCATTTTGGTGTGTTAGTTTAGTTATA TTTAAAGGCCTTCTTGTTGCACTCAGCTTTGATTTATATATACATTTTCTTGGCAGTATAACTGGGTCCTAAGTTTGAAG TTTAACCAGCCATACTTATTATTTCAATTGAAGCATTAGGCGCAATTTGAGAGTATAAAATCTATTTTCATAAATTGTTC CAGGTGGTTTTGATAAGCGGTTGAAGGAGAGTGTGGAGTACTTGGAAGAGCTTAAAAATTTAGCTGAAAGGGAAGGGGTC TCTAACCAAATAAGATTCATCACATCTTGCACTACAGCTGAAAGGAACACTCTTCTTTCAGAATGCCTATGTGTACTTTA CACGCCAAAGGTATGTGAAACCTTATTATGATTCCTGAAAATTGGTAGAAGTTGACTTAAGAGTTTTACATTAAGATCTT CGATACAGGATGAACACTTTGGCATTGTTCCTATAGAGGCAATGGCAGCTTATAAACCTGTTATTGCGTGCAATAGTGGT GGCCCGGTGGAGTCAATCAAGAATGGTGAAACAGGATTCCTTTGCGATCCTACACCACAGAAGTTTGCTTCAGCAATGGC TAGCCTCATAAATGATCCTCAGGGAGCAGAAAGAATGGGCAGAGAAGCTAGGAGGCATGTTGTTGAGTCATTCTCTACAA AGACATTTGGCGAACGTTTAAATAGATATTTAGTTGACATTCACCGGGAGAAGGAGGATTGA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0244100.8) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCAGCTGTTGAGCTTGCATCCCATGGTCATAATGTTCATGTTTTTACTGCTCATCATGATCGAAATCGATGTTTTGAG GAAACTGTTGCTGGTCTCTGTAGTCATTCCCATTTTGAAGCTTAAAAGGTCAACAAAGGTTGTGTTCTACTGTCATTTTC CTGACTTGTTGCTGGCTCAGCATACAACTTTTGTTCGGAGGATGTATAGGAAACCCATAGACTATGTAGAAGAAATAACA ACTGGAATGGCTGATTTGGTACTTGTCAACAGCAACTTCACTAAATCTACTTTTGCAAATACGTTTAAGCAACTAGATGC TAAAGGAATTCGACCAGCTGTTCTATACCCAGCAGTCAATGTGGATCAGTTCAATGAACCCACTTCCTTTAGGCTGAATT TTCTTTCCATTAACCGCTTTGAGAGGAAGAAGAACATAGAGTTAGCAATTTCAGCTTTTTCTATGCTTTGCTCACCTAAT GGACTTCTTAAAAATCAAGATACTACCGATGCTTCTTTGATTGTTGCAGGTGGTTTTGATAAGCGGTTGAAGGAGAGTGT GGAGTACTTGGAAGAGCTTAAAAATTTAGCTGAAAGGGAAGGGGTCTCTAACCAAATAAGATTCATCACATCTTGCACTA CAGCTGAAAGGAACACTCTTCTTTCAGAATGCCTATGTGTACTTTACACGCCAAAGGATGAACACTTTGGCATTGTTCCT ATAGAGGCAATGGCAGCTTATAAACCTGTTATTGCGTGCAATAGTGGTGGCCCGGTGGAGTCAATCAAGAATGGTGAAAC AGGATTCCTTTGCGATCCTACACCACAGAAGTTTGCTTCAGCAATGGCTAGCCTCATAAATGATCCTCAGGGAGCAGAAA GAATGGGCAGAGAAGCTAGGAGGCATGTTGTTGAGTCATTCTCTACAAAGACATTTGGCGAACGTTTAAATAGATATTTA GTTGACATTCACCGGGAGAAGGAGGATTGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0244100.8) extracted from Lotus japonicus Gifu v1.2 Proteins.

MQLLSLHPMVIMFMFLLLIMIEIDVLRKLLLVSVVIPILKLKRSTKVVFYCHFPDLLLAQHTTFVRRMYRKPIDYVEEIT TGMADLVLVNSNFTKSTFANTFKQLDAKGIRPAVLYPAVNVDQFNEPTSFRLNFLSINRFERKKNIELAISAFSMLCSPN GLLKNQDTTDASLIVAGGFDKRLKESVEYLEELKNLAEREGVSNQIRFITSCTTAERNTLLSECLCVLYTPKDEHFGIVP IEAMAAYKPVIACNSGGPVESIKNGETGFLCDPTPQKFASAMASLINDPQGAERMGREARRHVVESFSTKTFGERLNRYL VDIHREKED
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
NON_CYTOPLASMIC_DOMAIN
1 5 5 - –
TMHMM
TMhelix
3 25 23 - –
Phobius
TRANSMEMBRANE
6 26 21 - –
PANTHER
PTHR45918
11 327 317 2.3E-132
IPR027054
PANTHER
PTHR45918:SF1
11 327 317 2.3E-132 –
Phobius
CYTOPLASMIC_DOMAIN
27 329 303 - –
CDD
cd03805
32 316 285 6.62465E-151 –
SUPERFAMILY
SSF53756
34 319 286 3.01E-54 –
Gene3D
G3DSA:3.40.50.2000
100 308 209 8.9E-46 –
Pfam
PF00534
134 301 168 3.6E-37
IPR001296

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004378
Molecular function GDP-Man:Man1GlcNAc2-PP-Dol alpha-1,3-mannosyltransferase activity Catalysis of the reaction: beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-D-GlcNAc-diphosphodolichol + GDP-alpha-D-mannose = alpha-D-Man-(1->3)-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-D-GlcNAc-diphosphodolichol + GDP + H+. This reaction is the transfer of an alpha-D-mannosyl residue from GDP-mannose into lipid-linked oligosaccharide, forming an alpha-(1->3)-D-mannosyl-D-mannose linkage.
Subterm of
GO:0006486
Biological process Protein glycosylation A protein modification process that results in the addition of a carbohydrate or carbohydrate derivative unit to a protein amino acid, e.g. the addition of glycan chains to proteins.
Subterm of
Part of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0244100.8, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…