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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0248200 |
| Transcript ID | LotjaGi3g1v0248200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | PHD finger-like domain-containing protein 5A; TAIR: AT1G07170.1 PHF5-like protein; Swiss-Prot: sp|P0DI19|PHF5A_ARATH PHD finger-like domain-containing protein 5A; TrEMBL-Plants: tr|M8CB49|M8CB49_AEGTA Zinc finger CCCH domain-containing protein 30; Found in the gene: LotjaGi3g1v0248200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:41190751..41195511) extracted from Lotus japonicus Gifu genome v1.2.
CTTTACTAGGGTAAAAACTCTTTCCGCAATCCATAAAATCTGCCCAACGCTCTTAAGTCTTAAACCAAACCCCCGCCCGC GGTCTCTTTACTAGGCTACTGCCTACTCGATCGCGCACAAGCGTCTCTCCCTTTCATCCAGCCAGCGATATTAGGTTAGT ATCTCTGCTCTCTGCTTATCACGAGTCATGAGTCTTTTCCATTATATCTGTGTTCTACTTCTATTTTACTGGTGGCTAAT TTTTGAACATAAACTGTTTGATAAAATTTCCCATTGAACTCACCCACTCGGAATTGCGCGCGTGTACAATTAGTAGTATA TAATCCTGCATTTGAAATTGAAAATCTAAAGCTAAAGCTTCAACCTATATTTGTTTGTATGTTTGACATAATCATGGAGA AACTATTTTGCAGACTACAAGTTCGCGTGAACAAAATTAGTAATAAACTAGCACATTATTATTTAAGGTATTAAATAATT GCGAGATCAAGAATTTATAAATATTTAAATTAGTGCAATGTTGTAGTTTAACTTTCAATTTTTCATTTGTTGTTTGGATT TGGGTTGAGATGTTGTTATCACCAAGCTTGGATTTGGTGATGGTTTATTTATGTTTGGTTGGCTATTGTAAAATTCATTT TCTTCCTATTTTAATTTTAACAATTTGATTTCATGATTAAGGTTGATATGACCTTATCGGATCCGTTGGTAATAAGGGTG CCTAGTGTGTGGAAGGTATATCCTAGGAGTGGTGGTACGGGGGTGACACATAGAGGGGAGTATCTGGAGAGTTAGTTATG TTAAGCAGCCAGTGCATGGCTGGTCCATGAGGTGTGGATGGAGTGAGAAAGTAGTTATAAGAGAGAGGAAATTAGGGGGA AGGCAGAACTGATCACATTCAGTGTTACGAATGGGGTATTACTTTGTGTCTGCTATTGTTCTTTCTTTCTTCATTGAGTT CCAGGCTTCCAGCTCTATTTTGTAATTCATTTACCCTAGAAAGATTAATACAAAATTCACATTCCCATTTCCTATCCTTT TTTCTGTTTTTGTCCCTATCATTTTGATCCAACCTGCCAGATACTAATGGAGGAGTGTAGGAGACGAGAATAATCCAAGC GGGATGGAATAGAGAAATTGTTGGTTTTGGTCTAGATGATGCTTTCAGAGTTATCTATGGTGGTGAGCGTTATGGCACAA CGATAACAAACGCTCGATAAGGAGCTTAAGGAGCCAGCAAAATTCTGTAAATGCATTGAGGGATTGTTGCGCCGATAGGA GGATGATGGCGAGCACGAGTCTCAGACATCATCACGAAGTCCCATTAGTGTGCTTGGTGATATAGAAGTATGAGGAAAAG ACAATATTACCGTGTGTGACCTTGTTGGCAGCTTGGACTTGTTCATAAGGGTGGAAAAAATCGAATTACCTGTGTCCGAT GGGGCTAATCCAAGGGGATTATTGAAGAGGGCCGAGTTGTATTTGCACATTAACCACACTCCAGAAGCATCAAGAGTGCC TTTAGCTCAAGTGGGTGTGGAGAGAGTCGCTATTCATTGGTTCACAGAACAAAAGAGTTAATCTATTTATTATACTCAAT CTTCTCGCCTTAATCTCTCTCTTTTGCTTCCTCCACTTTTCAACACCCTAGTTCCTTGTTCAGGAGAAGCGTCATGGACT CATGGTTTAGCACTCCTTCATCTCTTGCCAGTCGCGAAGCATCATTTGTTGGTTAGTTCACAAATCCTCTTGGTGGTTCA TGATCGTCCCATCTCTCATTAATTATAGTGAGAAATTTCATTTCTTGTACTTTTAATGATCCACCACTAGCATGATTACC CATGTCTTCTATTGGTGTAAAGGTTTGATTTGGGGGGGGGGGTGCATCCGTTAATGGTCTTTGGTGGTCTAAAGGATTTT CTGTAACCATGGTGTGTTGGGGTTTGAGCTATTCTTTTACAAATTAATATTTTGACATGGGTATGACATACTGTAAGCAT GTTTGTTATTGACCCTTGTAAAAGGCTTTCCGTTTGTGTCCTCTTATGTCTATGGTACCCTTGTCATTTCCCTTTGTCTT TTGACTTGCCTCTGCATTTTTGCAGTTAACTTGATGATTCTATTCCAAAATGTTTTAAAATTATGGGAAAATTTATAAGT TCAGTGGGATGACTCAGGTGTTGGTTCGTTTTATCTATATGCCAGATTCTGAATGGTTGGTTCTATAGGCTGAAGTTTTC ACTTCAAATTGATGCTTATAGCATCGGAACATCTTTTAAATATCTGCTGTGTTTGTTTTTTGGATCATGCTTTGATAGAA AGGGCCTCTGCATGGTTCTTGAAGTTGGAACATATTAGAGTTAAAGTTTTGGTGGTCTAAAGGATTTTCTGTAACCATGG TCTTGTTTGGTGGGGGTGGGGATTTTGTGAAGTCACCTTAATGTATTTTGCAACTTGCTTATCTTTTAGTTTTTCTTCTT CCTTCCCTTTGTTGTATTATGGGTTGAGTACCCCTTGTACTCCCTTTAATGCATATTCTCTTTGCTTATAAAAAAAAATG GTGTGTTGGGGTTTGAGCTATTCTTTTACAAATTAATATTTTGACATGGGTATGGCATACCGTAAGCGTGTTTGTTATTG ACCCTTGTAAAATGCTTTCCGTTTGCGTCCTCTTATGTCTATGGTACCCTTGTCATTTCCCTTTTAGTCTTTTGACTTGC CTCTGCATTTTTGCAGTTAACTTGATAATTCTATTCCAAAATGTTTTAAAATTATGGGAAAATTCATAAGTTTAGTGGGA TGACTCAGGTGTTGGTTCGTTTTATCTATATGCCAGATTCTGAATGGTTTGTTCTACAGGTTGAAGTTTTCACTTCAAAT TGATGCTTACAGCAACGGAACATCTTTTCAATATCTGCTGTGTTTGTTTTTGGATCATGATTTGATAGAAAGGGGCTCTG CATGGTTCTTGAAGTTGGAACATATTAGAGTTAAAGTTTTGGTAGTCCGTGATGTTAGACTTTCATGAGGTTCCTGTGGT ATTCTGATGTGTCAAACAATAAAAACAGTGGGAAATTGATAGGAACAGAGAATTATATTATAGAATAATTATACAAGCGC TGGTTTTCGAGAGTCAACCTCTCCTAGTTCTGGAATTTGAGAGTCCAGACCTCTCCCACCATAACACACAACTTCTCAAT AATCCTAACAGAAGATACAACTCCTATTTATAACCACTCCTATATTATTTAAATTCAAACCATAGCAGTTACCTAACTGC TTTAATCATAAAATTACCCAACTTATAAATTAAAATAACTTCCTAACTGCTACTGTTCACGAGTACTGTTCATACAGTTT CCTATCAGAAATTAATGTTAATGATTAAATTAATTAGTCTTCTGTCCTGTGACCTGTGCTTAAGATATTTGATATGTCAA ATTCATGCTACTGAAAGAACAAATAAATTCTACGTGGACATTTTCTGTCTGCATCTTTGTGAGATATACGGTGTTAAGCT ATAAGAGCTTTAACTATTATATCAGTTCGTATGCTTTGGAGTTTGGGGTTTCTCGCTCCGCTTCTGAGCTTGCTAGAGCT AAGATACTAGTCCTTGCAGTTCCTACTTCCTATGATTTTATAATATTTTTCTGAGGACAAGTAACAGAACTAGATTCTGG CCTATAGTGGACTTGATGATATATTTGTCACCTTTGTTTGGCCCTCTGTGTGCAACTTTGTAAGAACTTAGATACAAGAT TTTTGAATACTTGCAGTTAATTTCGCATGACAATATGACATCAACTTGAAATTTGAAAGCTCTATGTTTCTCTGTGTTTT AGAGATAGTTAGTTGTCTGTGCTGATTATTGGCTAGTTCCAAAATCCATTTTCTTACGAAATATCAAGGTCACATTGTGG GATTATAGCTATTTGGCCATTTGATTCAAACAGACTTCACTTCCTTACGCATTTTGTAAATTTGCCTTGGAAATATTTGT TTTGAAGCTCAGAATGAAACGATCCTAAAACTTTGCTGTAAAACTTTCTATTACACTTTGTTTTTCTAGAAGTACAGTGT TTTACTGATTTACTTTGTATTTTGTTCAACCTTCAATTGCAGGTTGTTTAAAATATGGCCAAGCATCATCCTGATTTGAT TATGTGTCGGAAGCAACCTGGCATCGCCATTGGACGATTGTGTGAAAAATGCGATGGCAAGTGTGTGATATGCGACTCAT ATGTGCGTCCTTGTACACTAGTCCGGGTTTGTGATGAGTGCAACTATGGATCATTTCAAGGTCGATGTGTGATATGTGGA GGAGTAGGAATATCTGATGCTTACTACTGCAAGGAGTGCACACAACAAGAGAAAGACAGGGATGGTTGCCCCAAAATTGT CAATTTAGGGAGTGCCAAAACTGATTTATTCTATGAACGCAAAAAGTATGGTTTTAAGAAAAGATGATTAGGGAAGATTA CTAAAACATTTGTATGTGTAAAACTTTTTTCCATTCTGGGTGTTTTGCTCGGTTTCAGAATCAGAAGCATATGATATTAG ATATTGTGCTAGTAAATTTTTATTTGGTACAATGTTTAAATGTTTGGCTAGTTAACATGAACGACAATGAGACTCGCAAT TTGTTTTAGGGTTAAATCAGAAAATTGTTCCTGAACTTTGAGCGAGATCTGGTTTCCGTCCCTCGCTGAAAAATTATCTG AAATCTATCCTCAGACTATAAGAAATAAAATGAATTTGTCC
CDS sequence (LotjaGi3g1v0248200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCAAGCATCATCCTGATTTGATTATGTGTCGGAAGCAACCTGGCATCGCCATTGGACGATTGTGTGAAAAATGCGA TGGCAAGTGTGTGATATGCGACTCATATGTGCGTCCTTGTACACTAGTCCGGGTTTGTGATGAGTGCAACTATGGATCAT TTCAAGGTCGATGTGTGATATGTGGAGGAGTAGGAATATCTGATGCTTACTACTGCAAGGAGTGCACACAACAAGAGAAA GACAGGGATGGTTGCCCCAAAATTGTCAATTTAGGGAGTGCCAAAACTGATTTATTCTATGAACGCAAAAAGTATGGTTT TAAGAAAAGATGA
Protein sequence (LotjaGi3g1v0248200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEK DRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 110 | 110 | 8.2E-76 | – | |
| PIRSF | 1 | 110 | 110 | 1.2E-51 | ||
| Pfam | 1 | 104 | 104 | 2.4E-50 | ||
| PANTHER | 1 | 110 | 110 | 8.2E-76 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | MRNA splicing, via spliceosome | The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced. |
Expression pattern of LotjaGi3g1v0248200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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