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PHF5-like protein
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | MRNA splicing, via spliceosome | The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced. |
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | Os04g0663300 [Oryza sativa Japonica Group] gi|115461126|ref|NP_001054163.1| | 4 | ||
| – | Os04g0663300 [Oryza sativa Japonica Group] gi|115461126|ref|NP_001054163.1| | 4 | ||
| – | PHD finger-like domain-containing protein 5A; TAIR: AT1G07170.1 PHF5-like protein; Swiss-Prot: sp|P0DI19|PHF5A_ARATH PHD finger-like domain-containing protein 5A; TrEMBL-Plants: tr|M8CB49|M8CB49_AEGTA Zinc finger CCCH domain-containing protein 30; Found in the gene: LotjaGi3g1v0248200 | 5 | ||
| – | PHD finger-like domain-containing protein 5A; TAIR: AT1G07170.1 PHF5-like protein; Swiss-Prot: sp|P0DI19|PHF5A_ARATH PHD finger-like domain-containing protein 5A; TrEMBL-Plants: tr|M8CB49|M8CB49_AEGTA Zinc finger CCCH domain-containing protein 30; Found in the gene: LotjaGi3g1v0248200 | 5 | ||
| – | PHD finger-like domain-containing protein 5A; TAIR: AT1G07170.1 PHF5-like protein; Swiss-Prot: sp|P0DI19|PHF5A_ARATH PHD finger-like domain-containing protein 5A; TrEMBL-Plants: tr|M8CB49|M8CB49_AEGTA Zinc finger CCCH domain-containing protein 30; Found in the gene: LotjaGi6g1v0123000 | 5 | ||
| – | PHD finger-like domain-containing protein 5A; TAIR: AT1G07170.1 PHF5-like protein; Swiss-Prot: sp|P0DI19|PHF5A_ARATH PHD finger-like domain-containing protein 5A; TrEMBL-Plants: tr|M8CB49|M8CB49_AEGTA Zinc finger CCCH domain-containing protein 30; Found in the gene: LotjaGi6g1v0123000 | 5 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| PTHR13120:SF2 | PANTHER | 1 | 16.67 |